Mercurial > repos > devteam > lastz
diff lastz_wrapper.xml @ 4:60afcc2c1d05 draft
planemo upload commit 1869970193a1878acbc0f8a79b81dd02b37f1dc1
author | devteam |
---|---|
date | Fri, 09 Oct 2015 17:48:16 -0400 |
parents | 12d4359b7e2f |
children |
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--- a/lastz_wrapper.xml Fri Feb 21 14:25:04 2014 -0500 +++ b/lastz_wrapper.xml Fri Oct 09 17:48:16 2015 -0400 @@ -101,12 +101,12 @@ <option value="nochain">No</option> <option value="chain">Yes</option> </param> - <param name="O" type="integer" size="5" value="400" label="Gap opening penalty"/> - <param name="E" type="integer" size="5" value="30" label="Gap extension penalty"/> - <param name="X" type="integer" size="5" value="910" label="X-drop threshold"/> - <param name="Y" type="integer" size="5" value="9370" label="Y-drop threshold"/> - <param name="K" type="integer" size="5" value="3000" label="Set the threshold for HSPs (ungapped extensions scoring lower are discarded)"/> - <param name="L" type="integer" size="5" value="3000" label="Set the threshold for gapped alignments (gapped extensions scoring lower are discarded)"/> + <param name="O" type="integer" value="400" label="Gap opening penalty"/> + <param name="E" type="integer" value="30" label="Gap extension penalty"/> + <param name="X" type="integer" value="910" label="X-drop threshold"/> + <param name="Y" type="integer" value="9370" label="Y-drop threshold"/> + <param name="K" type="integer" value="3000" label="Set the threshold for HSPs (ungapped extensions scoring lower are discarded)"/> + <param name="L" type="integer" value="3000" label="Set the threshold for gapped alignments (gapped extensions scoring lower are discarded)"/> <param name="entropy" type="select" label="Involve entropy when filtering HSPs?"> <option value="noentropy">No</option> <option value="entropy">Yes</option> @@ -119,13 +119,13 @@ <option value="yes">Yes</option> </param> <when value="yes"> - <param name="ref_name" type="text" size="25" value="Type sequence name here" label="Enter name for the Reference sequence"/> + <param name="ref_name" type="text" value="Type sequence name here" label="Enter name for the Reference sequence"/> </when> <when value="no" /> </conditional> - <param name="min_ident" type="integer" size="3" value="0" label="Do not report matches below this identity (%)"/> - <param name="max_ident" type="integer" size="3" value="100" label="Do not report matches above this identity (%)"/> - <param name="min_cvrg" type="integer" size="3" value="0" label="Do not report matches that cover less than this percentage of each read"/> + <param name="min_ident" type="integer" value="0" label="Do not report matches below this identity (%)"/> + <param name="max_ident" type="integer" value="100" label="Do not report matches above this identity (%)"/> + <param name="min_cvrg" type="integer" value="0" label="Do not report matches that cover less than this percentage of each read"/> <param name="unmask" type="select" label="Convert lowercase bases to uppercase"> <option value="yes">Yes</option> <option value="no">No</option>