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changeset 4:60afcc2c1d05 draft

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planemo upload commit 1869970193a1878acbc0f8a79b81dd02b37f1dc1
author devteam
date Fri, 09 Oct 2015 17:48:16 -0400
parents d054d95585b1
children bd84ff27bc16
files lastz_wrapper.xml tool_dependencies.xml
diffstat 2 files changed, 11 insertions(+), 11 deletions(-) [+]
line wrap: on
line diff
--- a/lastz_wrapper.xml	Fri Feb 21 14:25:04 2014 -0500
+++ b/lastz_wrapper.xml	Fri Oct 09 17:48:16 2015 -0400
@@ -101,12 +101,12 @@
                     <option value="nochain">No</option>
                     <option value="chain">Yes</option>
                 </param>
-                <param name="O" type="integer" size="5" value="400" label="Gap opening penalty"/>
-                <param name="E" type="integer" size="5" value="30" label="Gap extension penalty"/>
-                <param name="X" type="integer" size="5" value="910" label="X-drop threshold"/>
-                <param name="Y" type="integer" size="5" value="9370" label="Y-drop threshold"/>
-                <param name="K" type="integer" size="5" value="3000" label="Set the threshold for HSPs (ungapped extensions scoring lower are discarded)"/>
-                <param name="L" type="integer" size="5" value="3000" label="Set the threshold for gapped alignments (gapped extensions scoring lower are discarded)"/>
+                <param name="O" type="integer" value="400" label="Gap opening penalty"/>
+                <param name="E" type="integer" value="30" label="Gap extension penalty"/>
+                <param name="X" type="integer" value="910" label="X-drop threshold"/>
+                <param name="Y" type="integer" value="9370" label="Y-drop threshold"/>
+                <param name="K" type="integer" value="3000" label="Set the threshold for HSPs (ungapped extensions scoring lower are discarded)"/>
+                <param name="L" type="integer" value="3000" label="Set the threshold for gapped alignments (gapped extensions scoring lower are discarded)"/>
                 <param name="entropy" type="select" label="Involve entropy when filtering HSPs?">
                     <option value="noentropy">No</option>
                     <option value="entropy">Yes</option>
@@ -119,13 +119,13 @@
                 <option value="yes">Yes</option>
             </param>
             <when value="yes">
-                <param name="ref_name" type="text" size="25" value="Type sequence name here" label="Enter name for the Reference sequence"/>
+                <param name="ref_name" type="text" value="Type sequence name here" label="Enter name for the Reference sequence"/>
             </when>
             <when value="no" />
         </conditional>
-        <param name="min_ident" type="integer" size="3" value="0" label="Do not report matches below this identity (%)"/>
-        <param name="max_ident" type="integer" size="3" value="100" label="Do not report matches above this identity (%)"/>
-        <param name="min_cvrg" type="integer" size="3" value="0" label="Do not report matches that cover less than this percentage of each read"/>
+        <param name="min_ident" type="integer" value="0" label="Do not report matches below this identity (%)"/>
+        <param name="max_ident" type="integer" value="100" label="Do not report matches above this identity (%)"/>
+        <param name="min_cvrg" type="integer" value="0" label="Do not report matches that cover less than this percentage of each read"/>
         <param name="unmask" type="select" label="Convert lowercase bases to uppercase">
             <option value="yes">Yes</option>
             <option value="no">No</option>
--- a/tool_dependencies.xml	Fri Feb 21 14:25:04 2014 -0500
+++ b/tool_dependencies.xml	Fri Oct 09 17:48:16 2015 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="lastz" version="1.02.00">
-        <repository changeset_revision="1d4a5e764543" name="package_lastz_1_02_00" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="1d4a5e764543" name="package_lastz_1_02_00" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>