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view test-data/lastz_d_test2.out @ 10:3e1ea2facca6 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit 8c6730485b00a47419ebe86278e4bd669377e3e2"
author iuc
date Sat, 27 Nov 2021 10:41:24 +0000
parents bd84ff27bc16
children
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# (a LASTZ scoring set, created by "LASTZ --infer")

bad_score          = X:-1781 # used for sub[X][*] and sub[*][X]
fill_score         = -178    # used when sub[*][*] not otherwise defined
gap_open_penalty   = 400
gap_extend_penalty = 30

      A     C     G     T
A    72   -79   -49   -97
C   -79   100  -178   -49
G   -49  -178   100   -79
T   -97   -49   -79    72