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view test-data/lastz_d_test2.out @ 8:e7f19d6a9af8 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit a7e9d5b3906b7ebb35b1c29c3a8e8203b2cefccd
author iuc
date Fri, 18 May 2018 16:58:38 -0400
parents bd84ff27bc16
children
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# (a LASTZ scoring set, created by "LASTZ --infer")

bad_score          = X:-1781 # used for sub[X][*] and sub[*][X]
fill_score         = -178    # used when sub[*][*] not otherwise defined
gap_open_penalty   = 400
gap_extend_penalty = 30

      A     C     G     T
A    72   -79   -49   -97
C   -79   100  -178   -49
G   -49  -178   100   -79
T   -97   -49   -79    72