changeset 0:0801f8207d30 draft

Uploaded tarball
author devteam
date Mon, 26 Nov 2012 09:47:51 -0500
parents
children a36c081e0043
files lastz_wrapper.py lastz_wrapper.xml test-data/b1.fasta test-data/lastz_census.txt test-data/lastz_diffs.txt test-data/lastz_diffs_ref_name.txt test-data/lastz_maf.txt test-data/lastz_wrapper_out2.sam test-data/lastz_wrapper_out3.tabular test-data/lastz_wrapper_out4.tabular test-data/phiX.2bit test-data/phiX.fasta test-data/phiX_split.fasta tool-data/lastz_seqs.loc.sample tool_data_table_conf.xml.sample tool_dependencies.xml
diffstat 16 files changed, 10414 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/lastz_wrapper.py	Mon Nov 26 09:47:51 2012 -0500
@@ -0,0 +1,290 @@
+#!/usr/bin/env python
+
+"""
+Runs Lastz
+Written for Lastz v. 1.01.88.
+
+usage: lastz_wrapper.py [options]
+    --ref_name: The reference name to change all output matches to
+    --ref_source: Whether the reference is cached or from the history
+    --source_select: Whether to used pre-set or cached reference file
+    --input1: The name of the reference file if using history or reference base name if using cached
+    --input2: The reads file to align 
+    --ref_sequences: The number of sequences in the reference file if using one from history 
+    --pre_set_options: Which of the pre set options to use, if using pre-sets
+    --strand: Which strand of the read to search, if specifying all parameters
+    --seed: Seeding settings, if specifying all parameters
+    --gfextend: Whether to perform gap-free extension of seed hits to HSPs (high scoring segment pairs), if specifying all parameters
+    --chain: Whether to perform chaining of HSPs, if specifying all parameters
+    --transition: Number of transitions to allow in each seed hit, if specifying all parameters
+    --O: Gap opening penalty, if specifying all parameters
+    --E: Gap extension penalty, if specifying all parameters
+    --X: X-drop threshold, if specifying all parameters
+    --Y: Y-drop threshold, if specifying all parameters
+    --K: Threshold for HSPs, if specifying all parameters
+    --L: Threshold for gapped alignments, if specifying all parameters
+    --entropy: Whether to involve entropy when filtering HSPs, if specifying all parameters
+    --identity_min: Minimum identity (don't report matches under this identity)
+    --identity_max: Maximum identity (don't report matches above this identity)
+    --coverage: The minimum coverage value (don't report matches covering less than this) 
+    --unmask: Whether to convert lowercase bases to uppercase
+    --out_format: The format of the output file (sam, diffs, or tabular (general))
+    --output: The name of the output file
+    --lastzSeqsFileDir: Directory of local lastz_seqs.loc file
+"""
+import optparse, os, subprocess, shutil, sys, tempfile, threading, time
+from Queue import Queue
+
+from galaxy import eggs
+import pkg_resources
+pkg_resources.require( 'bx-python' )
+from bx.seq.twobit import *
+from bx.seq.fasta import FastaReader
+from galaxy.util.bunch import Bunch
+
+STOP_SIGNAL = object()
+WORKERS = 4
+SLOTS = 128
+
+def stop_err( msg ):
+    sys.stderr.write( "%s" % msg )
+    sys.exit()
+
+def stop_queues( lastz, combine_data ):
+    # This method should only be called if an error has been encountered.
+    # Send STOP_SIGNAL to all worker threads
+    for t in lastz.threads:
+        lastz.put( STOP_SIGNAL, True )
+    combine_data.put( STOP_SIGNAL, True )
+
+class BaseQueue( object ):
+    def __init__( self, num_threads, slots=-1 ):
+        # Initialize the queue and worker threads
+        self.queue = Queue( slots )
+        self.threads = []
+        for i in range( num_threads ):
+            worker = threading.Thread( target=self.run_next )
+            worker.start()
+            self.threads.append( worker )
+    def run_next( self ):
+        # Run the next job, waiting until one is available if necessary
+        while True:
+            job = self.queue.get()
+            if job is STOP_SIGNAL:
+                return self.shutdown()
+            self.run_job( job )
+            time.sleep( 1 )
+    def run_job( self, job ):
+        stop_err( 'Not Implemented' )
+    def put( self, job, block=False ):
+        # Add a job to the queue
+        self.queue.put( job, block )
+    def shutdown( self ):
+        return
+
+class LastzJobQueue( BaseQueue ):
+    """
+    A queue that runs commands in parallel.  Blocking is done so the queue will
+    not consume much memory.
+    """
+    def run_job( self, job ):
+        # Execute the job's command
+        proc = subprocess.Popen( args=job.command, shell=True, stderr=subprocess.PIPE, )
+        proc.wait()
+        stderr = proc.stderr.read()
+        proc.wait()
+        if stderr:
+            stop_queues( self, job.combine_data_queue )
+            stop_err( stderr )
+        job.combine_data_queue.put( job )
+
+class CombineDataQueue( BaseQueue ):
+    """
+    A queue that concatenates files in serial.  Blocking is not done since this
+    queue is not expected to grow larger than the command queue.
+    """
+    def __init__( self, output_filename, num_threads=1 ):
+        BaseQueue.__init__( self, num_threads )
+        self.CHUNK_SIZE = 2**20 # 1Mb
+        self.output_file = open( output_filename, 'wb' )
+    def run_job( self, job ):
+        in_file = open( job.output, 'rb' )
+        while True:
+            chunk = in_file.read( self.CHUNK_SIZE )
+            if not chunk:
+                in_file.close()
+                break
+            self.output_file.write( chunk )
+        for file_name in job.cleanup:
+            os.remove( file_name )
+    def shutdown( self ):
+        self.output_file.close()
+        return
+
+def __main__():
+    #Parse Command Line
+    parser = optparse.OptionParser()
+    parser.add_option( '', '--ref_name', dest='ref_name', help='The reference name to change all output matches to' )
+    parser.add_option( '', '--ref_source', dest='ref_source', help='Whether the reference is cached or from the history' )
+    parser.add_option( '', '--ref_sequences', dest='ref_sequences', help='Number of sequences in the reference dataset' )
+    parser.add_option( '', '--source_select', dest='source_select', help='Whether to used pre-set or cached reference file' )
+    parser.add_option( '', '--input1', dest='input1', help='The name of the reference file if using history or reference base name if using cached' )
+    parser.add_option( '', '--input2', dest='input2', help='The reads file to align' )
+    parser.add_option( '', '--pre_set_options', dest='pre_set_options', help='Which of the pre set options to use, if using pre-sets' )
+    parser.add_option( '', '--strand', dest='strand', help='Which strand of the read to search, if specifying all parameters' )
+    parser.add_option( '', '--seed', dest='seed', help='Seeding settings, if specifying all parameters' )
+    parser.add_option( '', '--transition', dest='transition', help='Number of transitions to allow in each seed hit, if specifying all parameters' )
+    parser.add_option( '', '--gfextend', dest='gfextend', help='Whether to perform gap-free extension of seed hits to HSPs (high scoring segment pairs), if specifying all parameters' )
+    parser.add_option( '', '--chain', dest='chain', help='Whether to perform chaining of HSPs, if specifying all parameters' )
+    parser.add_option( '', '--O', dest='O', help='Gap opening penalty, if specifying all parameters' )
+    parser.add_option( '', '--E', dest='E', help='Gap extension penalty, if specifying all parameters' )
+    parser.add_option( '', '--X', dest='X', help='X-drop threshold, if specifying all parameters' )
+    parser.add_option( '', '--Y', dest='Y', help='Y-drop threshold, if specifying all parameters' )
+    parser.add_option( '', '--K', dest='K', help='Threshold for HSPs, if specifying all parameters' )
+    parser.add_option( '', '--L', dest='L', help='Threshold for gapped alignments, if specifying all parameters' )
+    parser.add_option( '', '--entropy', dest='entropy', help='Whether to involve entropy when filtering HSPs, if specifying all parameters' )
+    parser.add_option( '', '--identity_min', dest='identity_min', help="Minimum identity (don't report matches under this identity)" )
+    parser.add_option( '', '--identity_max', dest='identity_max', help="Maximum identity (don't report matches above this identity)" )
+    parser.add_option( '', '--coverage', dest='coverage', help="The minimum coverage value (don't report matches covering less than this)" )
+    parser.add_option( '', '--unmask', dest='unmask', help='Whether to convert lowercase bases to uppercase' )
+    parser.add_option( '', '--out_format', dest='format', help='The format of the output file (sam, diffs, or tabular (general))' )
+    parser.add_option( '', '--output', dest='output', help='The output file' )
+    parser.add_option( '', '--lastzSeqsFileDir', dest='lastzSeqsFileDir', help='Directory of local lastz_seqs.loc file' )
+    ( options, args ) = parser.parse_args()
+
+    # output version # of tool
+    try:
+        tmp = tempfile.NamedTemporaryFile().name
+        tmp_stdout = open( tmp, 'wb' )
+        proc = subprocess.Popen( args='lastz -v', shell=True, stdout=tmp_stdout )
+        tmp_stdout.close()
+        returncode = proc.wait()
+        stdout = None
+        for line in open( tmp_stdout.name, 'rb' ):
+            if line.lower().find( 'version' ) >= 0:
+                stdout = line.strip()
+                break
+        if stdout:
+            sys.stdout.write( '%s\n' % stdout )
+        else:
+            raise Exception
+    except:
+        sys.stdout.write( 'Could not determine Lastz version\n' )
+
+    if options.unmask == 'yes':
+        unmask = '[unmask]'
+    else:
+        unmask = ''
+    if options.ref_name:
+        ref_name = '[nickname=%s]' % options.ref_name
+    else:
+        ref_name = ''
+    # Prepare for commonly-used preset options
+    if options.source_select == 'pre_set':
+        set_options = '--%s' % options.pre_set_options
+    # Prepare for user-specified options
+    else:
+        set_options = '--%s --%s --gapped --strand=%s --seed=%s --%s O=%s E=%s X=%s Y=%s K=%s L=%s --%s' % \
+                    ( options.gfextend, options.chain, options.strand, options.seed, options.transition,
+                      options.O, options.E, options.X, options.Y, options.K, options.L, options.entropy )
+    # Specify input2 and add [fullnames] modifier if output format is diffs
+    if options.format == 'diffs':
+        input2 = '%s[fullnames]' % options.input2
+    else:
+        input2 = options.input2
+    if options.format == 'tabular':
+        # Change output format to general if it's tabular and add field names for tabular output
+        format = 'general-'
+        tabular_fields = ':score,name1,strand1,size1,start1,zstart1,end1,length1,text1,name2,strand2,size2,start2,zstart2,end2,start2+,zstart2+,end2+,length2,text2,diff,cigar,identity,coverage,gaprate,diagonal,shingle'
+    elif options.format == 'sam':
+        # We currently ALWAYS suppress SAM headers.
+        format = 'sam-'
+        tabular_fields = ''
+    else:
+        format = options.format
+        tabular_fields = ''
+
+    # Set up our queues
+    lastz_job_queue = LastzJobQueue( WORKERS, slots=SLOTS )
+    combine_data_queue = CombineDataQueue( options.output )
+
+    if options.ref_source == 'history':
+        # Reference is a fasta dataset from the history, so split job across
+        # the number of sequences in the dataset ( this could be a HUGE number )
+        try:
+            # Ensure there is at least 1 sequence in the dataset ( this may not be necessary ).
+            error_msg = "The reference dataset is missing metadata, click the pencil icon in the history item and 'auto-detect' the metadata attributes."
+            ref_sequences = int( options.ref_sequences )
+            if ref_sequences < 1:
+                stop_queues( lastz_job_queue, combine_data_queue )
+                stop_err( error_msg )
+        except:
+            stop_queues( lastz_job_queue, combine_data_queue )
+            stop_err( error_msg )
+        seqs = 0
+        fasta_reader = FastaReader( open( options.input1 ) )
+        while True:
+            # Read the next sequence from the reference dataset
+            seq = fasta_reader.next()
+            if not seq:
+                break
+            seqs += 1
+            # Create a temporary file to contain the current sequence as input to lastz
+            tmp_in_fd, tmp_in_name = tempfile.mkstemp( suffix='.in' )
+            tmp_in = os.fdopen( tmp_in_fd, 'wb' )
+            # Write the current sequence to the temporary input file
+            tmp_in.write( '>%s\n%s\n' % ( seq.name, seq.text ) )
+            tmp_in.close()
+            # Create a 2nd temporary file to contain the output from lastz execution on the current sequence
+            tmp_out_fd, tmp_out_name = tempfile.mkstemp( suffix='.out' )
+            os.close( tmp_out_fd )
+            # Generate the command line for calling lastz on the current sequence
+            command = 'lastz %s%s%s %s %s --ambiguousn --nolaj --identity=%s..%s --coverage=%s --format=%s%s > %s' % \
+                ( tmp_in_name, unmask, ref_name, input2, set_options, options.identity_min, 
+                  options.identity_max, options.coverage, format, tabular_fields, tmp_out_name )
+            # Create a job object
+            job = Bunch()
+            job.command = command
+            job.output = tmp_out_name
+            job.cleanup = [ tmp_in_name, tmp_out_name ]
+            job.combine_data_queue = combine_data_queue
+            # Add another job to the lastz_job_queue. Execution 
+            # will wait at this point if the queue is full.
+            lastz_job_queue.put( job, block=True )
+        # Make sure the value of sequences in the metadata is the same as the
+        # number of sequences read from the dataset ( this may not be necessary ).
+        if ref_sequences != seqs:
+            stop_queues( lastz_job_queue, combine_data_queue )
+            stop_err( "The value of metadata.sequences (%d) differs from the number of sequences read from the reference (%d)." % ( ref_sequences, seqs ) )
+    else:
+        # Reference is a locally cached 2bit file, split job across number of chroms in 2bit file
+        tbf = TwoBitFile( open( options.input1, 'r' ) )
+        for chrom in tbf.keys():
+            # Create a temporary file to contain the output from lastz execution on the current chrom
+            tmp_out_fd, tmp_out_name = tempfile.mkstemp( suffix='.out' )
+            os.close( tmp_out_fd )
+            command = 'lastz %s/%s%s%s %s %s --ambiguousn --nolaj --identity=%s..%s --coverage=%s --format=%s%s >> %s' % \
+                ( options.input1, chrom, unmask, ref_name, input2, set_options, options.identity_min, 
+                  options.identity_max, options.coverage, format, tabular_fields, tmp_out_name )
+            # Create a job object
+            job = Bunch()
+            job.command = command
+            job.output = tmp_out_name
+            job.cleanup = [ tmp_out_name ]
+            job.combine_data_queue = combine_data_queue
+            # Add another job to the lastz_job_queue. Execution 
+            # will wait at this point if the queue is full.
+            lastz_job_queue.put( job, block=True )
+
+    # Stop the lastz_job_queue
+    for t in lastz_job_queue.threads:
+        lastz_job_queue.put( STOP_SIGNAL, True )
+    # Although all jobs are submitted to the queue, we can't shut down the combine_data_queue
+    # until we know that all jobs have been submitted to its queue.  We do this by checking
+    # whether all of the threads in the lastz_job_queue have terminated.
+    while threading.activeCount() > 2:
+        time.sleep( 1 )
+    # Now it's safe to stop the combine_data_queue
+    combine_data_queue.put( STOP_SIGNAL )
+
+if __name__=="__main__": __main__()
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/lastz_wrapper.xml	Mon Nov 26 09:47:51 2012 -0500
@@ -0,0 +1,524 @@
+<tool id="lastz_wrapper_2" name="Lastz" version="1.2.2">
+    <requirements>
+        <requirement type="package" version="1.02.00">lastz</requirement>
+    </requirements>
+    <description> map short reads against reference sequence</description>
+    <command interpreter="python">lastz_wrapper.py
+      #if $seq_name.how_to_name=="yes":
+        --ref_name=$seq_name.ref_name 
+      #end if
+      --ref_source=$source.ref_source
+      --source_select=$params.source_select
+      --out_format=$out_format
+      --input2=$input2 
+      #if $source.ref_source=="history":
+        --input1=$source.input1
+        --ref_sequences=$input1.metadata.sequences 
+      #else:
+        --input1="${source.input1_2bit.fields.path}"
+        --ref_sequences="None" 
+      #end if
+      #if $params.source_select=="pre_set":
+        --pre_set_options=${params.pre_set_options}
+      #else:
+        --strand=$params.strand
+        --seed=$params.seed
+        --gfextend=$params.gfextend
+        --chain=$params.chain
+        --transition="$params.transition"
+        --O=$params.O
+        --E=$params.E
+        --X=$params.X
+        --Y=$params.Y
+        --K=$params.K
+        --L=$params.L
+        --entropy=$params.entropy 
+      #end if
+      --identity_min=$min_ident
+      --identity_max=$max_ident
+      --coverage=$min_cvrg
+      --output=$output1
+      --unmask=$unmask
+      --lastzSeqsFileDir=${GALAXY_DATA_INDEX_DIR}
+    </command>
+    <inputs>
+        <param name="input2" format="fasta" type="data" label="Align sequencing reads in" />
+        <conditional name="source">
+            <param name="ref_source" type="select" label="Against reference sequences that are">
+                <option value="cached">locally cached</option>
+                <option value="history">in your history</option>
+            </param>
+            <when value="cached">
+                <param name="input1_2bit" type="select" label="Using reference genome" help="If your genome of interest is not listed, contact the Galaxy team">
+                    <options from_data_table="lastz_seqs" />
+                </param>
+            </when>
+            <when value="history">
+                <param name="input1" type="data" format="fasta" label="Select a reference dataset" />
+            </when>
+        </conditional>
+        <param name="out_format" type="select" label="Output format">
+            <option value="sam">SAM</option>
+            <option value="diffs">Polymorphisms</option>
+            <option value="tabular">Tabular</option>
+        </param>
+        <conditional name="params">
+            <param name="source_select" type="select" label="Lastz settings to use" help="For most mapping needs use Commonly used settings. If you want full control use Full List">
+                <option value="pre_set">Commonly used</option>
+                <option value="full">Full Parameter List</option>
+            </param>
+            <when value="pre_set">
+                <param name="pre_set_options" type="select" label="Select mapping mode">
+                    <option value="yasra98">Roche-454 98% identity</option>
+                    <option value="yasra95">Roche-454 95% identity</option>
+                    <option value="yasra90">Roche-454 90% identity</option>
+                    <option value="yasra85">Roche-454 85% identity</option>
+                    <option value="yasra75">Roche-454 75% identity</option>
+                    <option value="yasra95short">Illumina 95% identity</option>
+                    <option value="yasra85short">Illumina 85% identity</option>
+                </param>
+            </when>
+            <when value="full">
+                <param name="strand" type="select" label="Which strand to search?">
+                    <option value="both">Both</option>
+                    <option value="plus">Search forward strand only (the one in the reference)</option>
+                    <option value="minus">Search the reverse complement strand only (opposite of the reference)</option>
+                </param>
+                <param name="seed" type="select" label="Select seeding settings" help="allows you set word size and number of mismatches">
+                    <option value="12of19">Seed hits require a 19 bp word with matches in 12 specific positions</option>
+                    <option value="14of22">Seed hits require a 22 bp word with matches in 14 specific positions</option>
+                </param>
+                <param name="transition" type="select" label="Select transition settings" help="affects the number of allowed transition substitutions">
+                    <option value="transition">Allow one transition in each seed hit</option>
+                    <option value="transition=2">Allow two transitions in a seed hit </option>
+                    <option value="notransition">Don't allow any transitions in seed hits</option>
+                </param>
+                <param name="gfextend" type="select" label="Perform gap-free extension of seed hits to HSPs (high scoring segment pairs)?">
+                    <option value="nogfextend">No</option>
+                    <option value="gfextend">Yes</option>
+                </param>
+                <param name="chain" type="select" label="Perform chaining of HSPs?">
+                    <option value="nochain">No</option>
+                    <option value="chain">Yes</option>
+                </param>
+                <param name="O" type="integer" size="5" value="400" label="Gap opening penalty"/>
+                <param name="E" type="integer" size="5" value="30" label="Gap extension penalty"/>
+                <param name="X" type="integer" size="5" value="910" label="X-drop threshold"/>
+                <param name="Y" type="integer" size="5" value="9370" label="Y-drop threshold"/>
+                <param name="K" type="integer" size="5" value="3000" label="Set the threshold for HSPs (ungapped extensions scoring lower are discarded)"/>
+                <param name="L" type="integer" size="5" value="3000" label="Set the threshold for gapped alignments (gapped extensions scoring lower are discarded)"/>
+                <param name="entropy" type="select" label="Involve entropy when filtering HSPs?">
+                    <option value="noentropy">No</option>
+                    <option value="entropy">Yes</option>
+                </param>
+            </when>   
+        </conditional>
+        <conditional name="seq_name">
+            <param name="how_to_name" type="select" label="Do you want to modify the reference name?">
+                <option value="no">No</option>
+                <option value="yes">Yes</option>
+            </param>
+            <when value="yes">
+                <param name="ref_name" type="text" size="25" value="Type sequence name here" label="Enter name for the Reference sequence"/>
+            </when>
+            <when value="no" />
+        </conditional>
+        <param name="min_ident" type="integer" size="3" value="0" label="Do not report matches below this identity (%)"/>
+        <param name="max_ident" type="integer" size="3" value="100" label="Do not report matches above this identity (%)"/>
+        <param name="min_cvrg" type="integer" size="3" value="0" label="Do not report matches that cover less than this percentage of each read"/>
+        <param name="unmask" type="select" label="Convert lowercase bases to uppercase">
+            <option value="yes">Yes</option>
+            <option value="no">No</option>
+        </param>
+    </inputs>
+    <outputs>
+        <data format="tabular" name="output1" label="${tool.name} on ${on_string}: mapped reads">
+            <change_format>
+                <when input="out_format" value="sam" format="sam" />
+            </change_format>
+        </data>
+    </outputs>
+    <tests>
+        <test>
+            <!--
+            Lastz command:
+            lastz phiX.2bit/phiX174[nickname=Ref] test-data/b1.fasta +nogfextend +nochain +gapped +strand=both +seed=12of19 +transition O=400 E=30 X=910 Y=9370 K=3000 L=3000 +noentropy +ambiguousn +nolaj +identity=0..100 +coverage=0 +format=sam- > lastz_wrapper_out2.sam 
+            You need to point to phiX.2bit somewhere on your system. b1.fasta is located in galaxy's test-data.  You will have to replace all the pluses before the
+            commands with 2 dashes, as double-dash can't appear in an XML comment.
+            -->
+            <param name="input2" value="b1.fasta" ftype="fasta" />
+            <param name="ref_source" value="cached" />
+            <!-- this is the backwards-compatible "unique value" for this file, not an actual path -->
+            <param name="input1_2bit" value="/galaxy/data/phiX/seq/phiX.2bit" />
+            <param name="out_format" value="sam" />
+            <param name="source_select" value="full" />
+            <param name="strand" value="both" />
+            <param name="seed" value="12of19" />
+            <param name="transition" value="transition" />
+            <param name="gfextend" value="nogfextend" />
+            <param name="chain" value="nochain" />
+            <param name="O" value="400" />
+            <param name="E" value="30" />
+            <param name="X" value="910" />
+            <param name="Y" value="9370" />
+            <param name="K" value="3000" />
+            <param name="L" value="3000" />
+            <param name="entropy" value="noentropy" />
+            <!--
+            how_to_name is not the default. It is changed to modify 
+            input1_2bit by adding the ref_name as a nickname
+            -->
+            <param name="how_to_name" value="yes" />
+            <param name="ref_name" value="Ref" />
+            <param name="min_ident" value="0" />
+            <param name="max_ident" value="100" />
+            <param name="min_cvrg" value="0" />
+            <param name="unmask" value="yes" />
+            <output name="output1" file="lastz_wrapper_out2.sam" />
+        </test>
+        <test>
+            <!--
+            Lastz command:
+            lastz test-data/phiX.fasta test-data/b1.fasta[fullnames] +yasra95short +ambiguousn +nolaj +identity=0..100 +coverage=0 +format=diffs > lastz_wrapper_out3.tabular 
+            phiX.fasta and b1.fasta are located in galaxy's test-data.  You will have to replace all the pluses before the commands with 2 dashes, 
+            as double-dash can't appear in an XML comment.
+            -->
+            <param name="input2" value="b1.fasta" ftype="fasta" />
+            <param name="ref_source" value="history" />
+            <param name="input1" value="phiX.fasta" ftype="fasta" />
+            <param name="out_format" value="diffs" />
+            <param name="source_select" value="pre_set" />
+            <param name="pre_set_options" value="yasra95short" />
+            <param name="how_to_name" value="no" />
+            <param name="min_ident" value="0" />
+            <param name="max_ident" value="100" />
+            <param name="min_cvrg" value="0" />
+            <param name="unmask" value="yes" />
+            <output name="output1" file="lastz_wrapper_out3.tabular" />
+        </test>
+        <test>
+            <!--
+            Lastz command: first you will need to split the file phiX_split.fasta into two files, 
+            phiX1.fasta and phiX2.fasta, each with 1 sequence (phiX1 and phiX2, respectively). Then:
+            lastz phiX1.fasta test-data/b1.fasta *yasra95short *ambiguousn *nolaj *identity=0..100 *coverage=0 *format=general-:score,name1,strand1,size1,start1,zstart1,end1,length1,text1,name2,strand2,size2,start2,zstart2,end2,start2+,zstart2+,end2+,length2,text2,diff,cigar,identity,coverage,gaprate,diagonal,shingle > lastz_wrapper_out4.tabular 
+            lastz phiX2.fasta test-data/b1.fasta *yasra95short *ambiguousn *nolaj *identity=0..100 *coverage=0 *format=general-:score,name1,strand1,size1,start1,zstart1,end1,length1,text1,name2,strand2,size2,start2,zstart2,end2,start2+,zstart2+,end2+,length2,text2,diff,cigar,identity,coverage,gaprate,diagonal,shingle >> lastz_wrapper_out4.tabular 
+            You need to point to phiX1.fasta and phiX2.fasta somewhere on your system. 
+            phiX_split.fasta and b1.fasta are located in galaxy's test-data 
+            You will have to replace all the asterisks before the commands with 2 dashes, 
+            as double-dash can't appear in an XML comment 
+
+            NOTE: since the input file include more than 1 sequence, the output must be sorted in 
+            order for functional test to pass.  This is done using the sort="True" attribute on the output.
+            -->
+            <param name="input2" value="b1.fasta" ftype="fasta" />
+            <param name="ref_source" value="history" />
+            <param name="input1" value="phiX_split.fasta" ftype="fasta"  />
+            <param name="out_format" value="tabular" />
+            <param name="source_select" value="pre_set" />
+            <param name="pre_set_options" value="yasra95short" />
+            <param name="how_to_name" value="no" />
+            <param name="min_ident" value="0" />
+            <param name="max_ident" value="100" />
+            <param name="min_cvrg" value="0" />
+            <param name="unmask" value="yes" />
+            <output name="output1" file="lastz_wrapper_out4.tabular" sort="True" />
+        </test>
+    </tests>
+    <help>
+        
+**What it does**
+        
+**LASTZ** is a high performance pairwise sequence aligner derived from BLASTZ. It is written by Bob Harris in Webb Miller's laboratory at Penn State University. Special scoring sets were derived to improve runtime performance and quality. This Galaxy version of LASTZ is geared towards aligning short (Illumina/Solexa, AB/SOLiD) and medium (Roche/454) reads against a reference sequence. There is excellent, extensive documentation on LASTZ available here_.
+
+ .. _here: http://www.bx.psu.edu/miller_lab/dist/README.lastz-1.02.00/README.lastz-1.02.00.html
+ 
+------
+
+**Input formats**
+
+LASTZ accepts reference and reads in FASTA format. However, because Galaxy supports implicit format conversion the tool will recognize fastq and other method specific formats.
+
+------
+
+**Outputs**
+
+LASTZ generates one output. Depending on the choice you make in the *Select output format* drop-down, LASTZ will produce a SAM file showing sequence alignments, a list of differences between the reads and reference (Polymorphisms), or a general table with one line per alignment block (Tabular). Examples of these outputs are shown below.
+
+**SAM output**
+
+SAM has 12 columns::
+
+                                   1     2     3         4   5    6  7         8     9                                    10                                     11  12
+  ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
+  HWI-EAS91_1_30788AAXX:1:2:1670:915    99  chr9  58119878  60  36M  =  58120234   392  GACCCCTACCCCACCGTGCTCTGGATCTCAGTGTTT   IIIIIIIIIIIIIIIIEIIIIIII7IIIIIIIIIII  XT:A:U  NM:i:0  SM:i:37  AM:i:37  X0:i:1  X1:i:0  XM:i:0  XO:i:0  XG:i:0  MD:Z:36
+  HWI-EAS91_1_30788AAXX:1:2:1670:915   147  chr9  58120234  60  36M  =  58119878  -392  ATGAGTCGAATTCTATTTTCCAAACTGTTAACAAAA   IFIIDI;IIICIIIIIIIIIIIIIIIIIIIIIIIII  XT:A:U  NM:i:0  SM:i:37  AM:i:37  X0:i:1  X1:i:0  XM:i:0  XO:i:0  XG:i:0  MD:Z:36
+
+
+where::
+
+     Column  Description
+  ---------  ---------------------------------------------------------------------   
+   1. QNAME  Query (pair) NAME
+   2. FLAG   bitwise FLAG
+   3. RNAME  Reference sequence NAME
+   4. POS    1-based leftmost POSition/coordinate of clipped sequence
+   5. MAPQ   MAPping Quality (Phred-scaled)
+   6. CIGAR  extended CIGAR string
+   7. MRNM   Mate Reference sequence NaMe ('=' if same as RNAME)
+   8. MPOS   1-based Mate POSition
+   9. ISIZE  Inferred insert SIZE
+  10. SEQ    query SEQuence on the same strand as the reference
+  11. QUAL   query QUALity (ASCII-33 gives the Phred base quality)
+  12. OPT    variable OPTional fields in the format TAG:VTYPE:VALUE, tab-separated
+  
+The flags are as follows::
+
+    Flag  Description
+  ------  -------------------------------------
+  0x0001  the read is paired in sequencing
+  0x0002  the read is mapped in a proper pair
+  0x0004  the query sequence itself is unmapped
+  0x0008  the mate is unmapped
+  0x0010  strand of the query (1 for reverse)
+  0x0020  strand of the mate
+  0x0040  the read is the first read in a pair
+  0x0080  the read is the second read in a pair
+  0x0100  the alignment is not primary
+
+**Polymorphism (SNP or differences) output**
+
+Polymorphism output contains 14 columns::
+
+     1     2     3  4     5                                   6   7   8  9  10  11 12                                   13                                    14
+  --------------------------------------------------------------------------------------------------------------------------------------------------------------
+  chrM  2490  2491  +  5386  HWI-EAS91_1_306UPAAXX:6:1:486:822   10  11  -  36  C  A  ACCTGTTTTACAGACACCTAAAGCTACATCGTCAAC  ACCTGTTTTAAAGACACCTAAAGCTACATCGTCAAC
+  chrM  2173  2174  +  5386  HWI-EAS91_1_306UPAAXX:6:1:259:1389  26  27  +  36  G  T  GCGTACTTATTCGCCACCATGATTATGACCAGTGTT  GCGTACTTATTCGCCACCATGATTATTACCAGTGTT
+
+where::
+
+  1. (chrM)   - Reference sequence id
+  2. (2490)   - Start position of the difference in the reference
+  3. (2491)   - End position of the difference in the reference
+  4. (+)      - Strand of the reference (always plus)
+  5. (5386)   - Length of the reference sequence
+  6. (HWI...) - read id
+  7. (10)     - Start position of the difference in the read
+  8. (11)     - End position of the difference in the read
+  9. (+)      - Strand of the read
+ 10. (36)     - Length of the read
+ 11. (C)      - Nucleotide in the reference
+ 12. (A)      - Nucleotide in the read
+ 13. (ACC...) - Reference side os the alignment
+ 14. (ACC...) - Read side of the alignment
+ 
+**Tabular output**
+
+Tabular output is a tab-separated format with 30 columns::
+
+   1        2  3     4     5     6     7   8                 9              10  11   12   13   14   15   16   17   18  19                20                21   22     23      24      25    26    27    28    29  30
+  -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
+  14  PHIX174  +  5386  4648  4647  4661  14  ATTTTCGTGATATT    EYKX4VC01BV8HS  +   204  154  153  167  154  153  167  14  ATTTTCGTGATATT    ..............    14M  14/14  100.0%  14/204  6.9%  0/14  0.0%  4494  NA
+  16  PHIX174  +  5386  3363  3362  3378  16  GACGCCGGATTTGAGA  EYKX4VC01AWJ88  -   259   36   35   51  209  208  224  16  GACGCCGGATTTGAGA  ................  16M  16/16  100.0%  16/259  6.2%  0/16  0.0%  3327  NA
+
+The following columns are present::
+
+             Field  Meaning
+  ----------------  -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
+   1.        score  Score of the alignment block. The scale and meaning of this number will vary, depending on the final stage performed and other command-line options.
+   2.        name1  Name of the target sequence.
+   3.      strand1  Target sequence strand, either "+" or "−".
+   4.        size1  Size of the entire target sequence.
+   5.       start1  Starting position of the alignment block in the target, origin-one.
+   6.      zstart1  Starting position of the alignment block in the target, origin-zero.
+   7.         end1  Ending position of the alignment block in the target, expressed either as origin-one closed or origin-zero half-open (the ending value is the same in both systems).
+   8.      length1  Length of the alignment block in the target (excluding gaps).
+   9.        text1  Aligned characters in the target, including gap characters.
+  10.        name2  Name of the query sequence.
+  11.      strand2  Query sequence strand, either "+" or "−".
+  12.        size2  Size of the entire query sequence.
+  13.       start2  Starting position of the alignment block in the query, origin-one.
+  14.      zstart2  Starting position of the alignment block in the query, origin-zero.
+  15.         end2  Ending position of the alignment block in the query, expressed either as origin-one closed or origin-zero half-open (the ending value is the same in both systems).
+  16.      start2+  Starting position of the alignment block in the query, counting along the query sequence's positive strand (regardless of which query strand was aligned), origin-one. Note that if strand2 is "−", then this is the other end of the block from start2.
+  17.     zstart2+  Starting position of the alignment block in the query, counting along the query sequence's positive strand (regardless of which query strand was aligned), origin-zero. Note that if strand2 is "−", then this is the other end of the block from zstart2.
+  18.        end2+  Ending position of the alignment block in the query, counting along the query sequence's positive strand (regardless of which query strand was aligned), expressed either as origin-one closed or origin-zero half-open (the ending value is the same in both systems). Note that if strand2 is "−", then this is the other end of the block from end2.
+  19.      length2  Length of the alignment block in the query (excluding gaps).
+  20.        text2  Aligned characters in the query, including gap characters.
+  21.         diff  Differences between what would be written for text1 and text2. Matches are written as . (period), transitions as : (colon), transversions as X, and gaps as - (hyphen).
+  22.        cigar  A CIGAR-like representation of the alignment's path through the Dynamic Programming matrix. This is the short representation, without spaces, described in the Ensembl CIGAR specification.
+  23./24. identity  Fraction of aligned bases in the block that are matches (see Identity). This is written as two fields. The first field is a fraction, written as &lt;n&gt;/&lt;d&gt;. The second field contains the same value, computed as a percentage.
+  25./26. coverage  Fraction of the entire input sequence (target or query, whichever is shorter) that is covered by the alignment block (see Coverage). This is written as two fields. The first field is a fraction, written as &lt;n&gt;/&lt;d&gt;. The second field contains the same value, computed as a percentage.
+  27./28.  gaprate  Rate of gaps (also called indels) in the alignment block. This is written as two fields. The first field is a fraction, written as &lt;n&gt;/&lt;d&gt;, with the numerator being the number of alignment columns containing gaps and the denominator being the number without gaps. The second field contains the same value, computed as a percentage.
+  29.     diagonal  The diagonal of the start of the alignment block in the dynamic programming matrix, expressed as an identifying number start1-start2.
+  30.      shingle  A measurement of the shingle overlap between the target and the query. This is intended for the case where both the target and query are relatively short, and their ends are expected to overlap.  
+
+-------
+
+**LASTZ Settings**
+
+There are two setting modes: (1) **Commonly used settings** and (2) **Full Parameter List**.
+
+**Commonly used settings**
+
+There are seven modes::
+
+  Illumina-Solexa/AB-SOLiD 95% identity
+  Illumina-Solexa/AB-SOLiD 85% identity
+  Roche-454 98% identity
+  Roche-454 95% identity
+  Roche-454 90% identity
+  Roche-454 85% identity
+  Roche-454 75% identity
+
+When deciding which one to use, consider the following: a 36 bp read with two differences will be 34/36 = 94% identical to the reference.  
+
+**Full Parameter List**
+
+This mode gives you fuller control over lastz. The description of these and other parameters is found at the end of this page. Note that not all parameters are included in this interface. If you would like to make additional options available through Galaxy, e-mail us at galaxy-bugs@bx.psu.edu.
+
+------
+
+**Do you want to modify the reference name?**
+
+This option allows you to set the name of the reference sequence manually. This is helpful when, for example, you would like to make the reference name compatible with the UCSC naming conventions to be able to display your lastz results as a custom track at the UCSC Genome Browser.
+
+------
+
+**LASTZ parameter list**
+
+This is an exhaustive list of LASTZ options. Once again, please note that not all options are included in this interface. If you would like to make additional options available through Galaxy, e-mail us at galaxy-bugs@bx.psu.edu::
+
+  target[[s..e]][-]       spec/file containing target sequence (fasta or nib)
+                          [s..e] defines a subrange of the file
+                          - indicates reverse-complement
+                          (use --help=files for more details)
+  query[[s..e]][-]        spec/file containing query sequences (fasta or nib)
+                          if absent, queries come from stdin (unless they
+                          aren't needed, as for --self or --tableonly)
+                          (use --help=files for more details)
+  --self                  the target sequence is also the query
+  --quantum               the query sequence contains quantum DNA
+  --seed=match&lt;length&gt;    use a word with no gaps instead of a seed pattern
+  --seed=half&lt;length&gt;     use space-free half-weight word instead of seed pattern
+  --match=&lt;reward&gt;[,&lt;penalty&gt;]   set the score values for a match (+&lt;reward&gt;)
+                          and mismatch (-&lt;penalty&gt;)
+  --[no]trans[ition][=2]         allow one or two transitions in a seed hit
+                          (by default a transition is allowed)
+  --word=&lt;bits&gt;           set max bits for word hash;  use this to trade time for
+                          memory, eliminating thrashing for heavy seeds
+                          (default is 28 bits)
+  --[no]filter=[&lt;T&gt;:]&lt;M&gt;     filter half-weight seed hits, requiring at least M
+                          matches and allowing no more than T transversions
+                          (default is no filtering)
+  --notwins               require just one seed hit
+  --twins=[&lt;min&gt;:]&lt;maxgap&gt;   require two nearby seed hits on the same diagonal
+                          (default is twins aren't required)
+  --notwins               allow single, isolated seeds
+  --[no]recoverseeds      avoid losing seeds in hash collisions. Cannot be used with --twins
+  --seedqueue=&lt;entries&gt;   set number of entries in seed hit queue
+                          (default is 262144)
+  --anchors=&lt;file&gt;        read anchors from a file, instead of discovering anchors
+                          via seeding
+  --recoverhits           recover hash-collision seed hits
+                          (default is not to recover seed hits)
+  --step=&lt;length&gt;         set step length (default is 1)
+  --maxwordcount=&lt;limit&gt;  words occurring more often than &lt;limit&gt; in the target
+                          are not eligible for seeds
+  --strand=both           search both strands
+  --strand=plus           search + strand only (matching strand of query spec)
+  --strand=minus          search - strand only (opposite strand of query spec)
+                          (by default both strands are searched)
+  --ambiguousn            treat N as an ambiguous nucleotide
+                          (by default N is treated as a sequence splicing character)
+  --[no]gfextend          perform gap-free extension of seed hits to HSPs
+                          (by default no extension is performed)
+  --[no]chain             perform chaining
+  --chain=&lt;diag,anti&gt;     perform chaining with given penalties for diagonal and
+                          anti-diagonal
+                          (by default no chaining is performed)
+  --[no]gapped            perform gapped alignment (instead of gap-free)
+                          (by default gapped alignment is performed)
+  --score[s]=&lt;file&gt;         read substitution scores from a file
+                          (default is HOXD70)
+  --unitscore[s]          scores are +1/-1 for match/mismatch
+  --gap=&lt;[open,]extend&gt;   set gap open and extend penalties (default is 400,30)
+  --xdrop=&lt;score&gt;         set x-drop threshold (default is 10*sub[A][A])
+  --ydrop=&lt;score&gt;         set y-drop threshold (default is open+300extend)
+  --infer[=&lt;control&gt;]     infer scores from the sequences, then use them
+  --inferonly[=&lt;control&gt;]   infer scores, but don't use them (requires --infscores)
+                          all inference options are read from the control file
+  --infscores[=&lt;file&gt;]    write inferred scores to a file
+  --hspthresh=&lt;score&gt;     set threshold for high scoring pairs (default is 3000)
+                          ungapped extensions scoring lower are discarded
+                          &lt;score&gt; can also be a percentage or base count
+  --entropy               adjust for entropy when qualifying HSPs in the x-drop extension 
+                          method
+  --noentropy             don't adjust for entropy when qualifying HSPs
+  --exact=&lt;length&gt;        set threshold for exact matches
+                          if specified, exact matches are found rather than high
+                          scoring pairs (replaces --hspthresh)
+  --inner=&lt;score&gt;         set threshold for HSPs during interpolation
+                          (default is no interpolation)
+  --gappedthresh=&lt;score&gt;  set threshold for gapped alignments
+                          gapped extensions scoring lower are discarded
+                          &lt;score&gt; can also be a percentage or base count
+                          (default is to use same value as --hspthresh)
+  --ball=&lt;score&gt;          set minimum score required of words 'in' a quantum ball
+  --[no]entropy           involve entropy in filtering high scoring pairs
+                          (default is "entropy")
+  --[no]mirror            report/use mirror image of all gap-free alignments
+                          (default is "mirror" for self-alignments only)
+  --traceback=&lt;bytes&gt;     space for trace-back information
+                          (default is 80.0M)
+  --masking=&lt;count&gt;       mask any position in target hit this many times
+                          zero indicates no masking
+                          (default is no masking)
+  --targetcapsule=&lt;capsule_file&gt;   the target seed word position table and seed
+                          (as well as the target sequence)are read from specified file
+  --segments=&lt;segment_file&gt;   read segments from a file, instead of discovering
+                          them via seeding. Replaces other seeding or gap-free extension
+                          options
+  --[no]census[=&lt;file&gt;]     count/report how many times each target base aligns
+                          (default is to not report census)
+  --identity=&lt;min&gt;[..&lt;max&gt;]   filter alignments by percent identity
+                          0&lt;=min&lt;=max&lt;=100;  blocks (or HSPs) outside min..max
+                          are discarded
+                          (default is no identity filtering)
+  --coverage=&lt;min&gt;[..&lt;max&gt;]   filter alignments by percentage pf query covered
+                          0&lt;=min&lt;=max&lt;=100;  blocks (or HSPs) outside min..max
+                          are discarded
+                          (default is no query coverage filtering)
+  --notrivial             do not output trivial self-alignment block if the target and query 
+                          sequences are identical. Using --self enables this option automatically
+  --output=&lt;output_file&gt;  write the alignments to the specified file name instead of stdout
+  --code=&lt;file&gt;           give quantum code for query sequence (only for display)
+  --format=&lt;type&gt;         specify output format; one of lav, axt, maf, maf+, maf-, text,
+                          lav+text, cigar, text, rdplot, general, or general:&lt;fields&gt;
+                          (by default output is LAV)
+  --rdotplot=&lt;file&gt;       create an additional output file suitable for plotting the alignments 
+                          with the R statistical package.
+  --markend               Just before normal completion, write "# lastz end-of-file" to output file
+  --census[=&lt;output_file&gt;]    count and report how many times each target base aligns, up 
+                          to 255. Ns are included in the count
+  --census16[=&lt;output_file&gt;]  count and report how many times each target base aligns, up
+                          up 65 thousand
+  --census32[=&lt;output_file&gt;]  count and report how many times each target bas aligns, up
+                          to 4 billion
+  --writecapsule=&lt;capsule_file&gt;    just write out a target capsule file and quit; don't 
+                          search for seeds or perform subsequent stages
+  --verbosity=&lt;level&gt;     set info level (0 is minimum, 10 is everything)
+                          (default is 0)
+  --[no]runtime           report runtime in the output file
+                          (default is to not report runtime)
+  --tableonly[=count]     just produce the target position table, don't
+                          search for seeds
+  --[no]stats[=&lt;file&gt;]    show search statistics (or don't)
+                          (not available in this build)
+  --version               report the program version and quit
+  --help                  list all options
+  --help=files            list information about file specifiers
+  --help=short[cuts]      list blastz-compatible shortcuts
+  --help=yasra            list yasra-specific shortcuts
+
+    </help>
+</tool>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/b1.fasta	Mon Nov 26 09:47:51 2012 -0500
@@ -0,0 +1,1000 @@
+>HWI-EAS91_1_306UPAAXX:6:1:1503:1160
+GGTGGTCTATAGTGTTATTAATATCAAGTTGGGGGG
+>HWI-EAS91_1_306UPAAXX:6:1:1564:1179
+GCGAGCAGTAGACTCCTTCTGTTGATAAGCAAGCAT
+>HWI-EAS91_1_306UPAAXX:6:1:1704:1082
+GATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTC
+>HWI-EAS91_1_306UPAAXX:6:1:1588:1797
+GTATGTTTCTCCTGCTTATCACCTTCTTGAAGGCTT
+>HWI-EAS91_1_306UPAAXX:6:1:1304:1526
+GTAGTTGAAATGGTAATAAGACGACCAATCTGACCT
+>HWI-EAS91_1_306UPAAXX:6:1:1490:1582
+GTCGTGTTCAACAGACCTATAAACATTCTGTGCCGC
+>HWI-EAS91_1_306UPAAXX:6:1:1356:1339
+GTAGACATTTTTACTTTTTATGTCCCTCATCGTCAC
+>HWI-EAS91_1_306UPAAXX:6:1:1311:853
+GGTTGGTTTATCGTTTTTGACACTCTCACGTTGTCT
+>HWI-EAS91_1_306UPAAXX:6:1:1257:1552
+GTTCGCTTTGAGTCTTCTTCGGTTCCGACTACCCTC
+>HWI-EAS91_1_306UPAAXX:6:1:1486:1402
+GTTACTGAGAAGTTAATGGATGAATTGGCACAATGC
+>HWI-EAS91_1_306UPAAXX:6:1:1028:1081
+GGATTGGTTTCGCTGAATCAGGTTATTAAAGAGATT
+>HWI-EAS91_1_306UPAAXX:6:1:1167:752
+GGTTTTCTTCATTGCATTCAGATGGATACATCTGTC
+>HWI-EAS91_1_306UPAAXX:6:1:1507:1113
+GTCAACGTTATATTTTGATAGTTTGACGGTTAATTC
+>HWI-EAS91_1_306UPAAXX:6:1:1654:1311
+GGATGAAAATGCTCACAATGACAAATCTGTCCACGG
+>HWI-EAS91_1_306UPAAXX:6:1:1386:1060
+GTTCTTGGTCAGTATGCAAATTAGCATAAGCAGCTT
+>HWI-EAS91_1_306UPAAXX:6:1:1070:1356
+GGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG
+>HWI-EAS91_1_306UPAAXX:6:1:787:1032
+GCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCA
+>HWI-EAS91_1_306UPAAXX:6:1:834:1017
+GCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGT
+>HWI-EAS91_1_306UPAAXX:6:1:1703:1155
+GGATTGGTTTCGCTGAATCAGGTTATTAAAGAGATT
+>HWI-EAS91_1_306UPAAXX:6:1:1406:593
+GTTGAGTTCGATAATGGTGATATGTATGTTTACGGC
+>HWI-EAS91_1_306UPAAXX:6:1:1411:886
+GTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCAT
+>HWI-EAS91_1_306UPAAXX:6:1:923:972
+GCATGACAAGTAAAGGACGGTTGTCAGCGTCATAAG
+>HWI-EAS91_1_306UPAAXX:6:1:1279:1004
+GCCATAGCACCAGAAACAAAACTAGGGGCGGCCTCT
+>HWI-EAS91_1_306UPAAXX:6:1:1070:840
+GGTTGTCAGCGTCATAAGAGGTTTTACCTCCAAATG
+>HWI-EAS91_1_306UPAAXX:6:1:1595:1040
+GTTTCTGATAAGTTGCTTGATTTGGTTGGACTTGGT
+>HWI-EAS91_1_306UPAAXX:6:1:1002:559
+GAGATTGCCGAGATGCAAAATGAGACTCAAAAAGAG
+>HWI-EAS91_1_306UPAAXX:6:1:999:974
+GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGC
+>HWI-EAS91_1_306UPAAXX:6:1:896:982
+GTGGCTGGAGACAAATAATCTCTTTAATAACCTTAT
+>HWI-EAS91_1_306UPAAXX:6:1:1366:741
+GTTCAAGATTGCTGGAGGCCTCCACTATGAAATCGC
+>HWI-EAS91_1_306UPAAXX:6:1:749:1469
+GTTTATGGTGAACAGTGGATTAAGTTCATGAAGGAT
+>HWI-EAS91_1_306UPAAXX:6:1:1010:592
+GAGTTTATTGCTGCCGTCATTGCTTATTATGTTCAT
+>HWI-EAS91_1_306UPAAXX:6:1:1393:650
+GTGACTCATATCTAAACCAGTCCTTGACGAACGTGC
+>HWI-EAS91_1_306UPAAXX:6:1:1238:1731
+GAGAAATAAAAGTCTGAAACATGATTAAACTCCTAA
+>HWI-EAS91_1_306UPAAXX:6:1:1629:908
+GATGCGGTTATCCATCTGCTTATGGAAGCCAAGCAT
+>HWI-EAS91_1_306UPAAXX:6:1:1560:849
+GCTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAG
+>HWI-EAS91_1_306UPAAXX:6:1:1029:783
+GAGAAGTTAATGGATGAATTGGCACAATGCTACAAT
+>HWI-EAS91_1_306UPAAXX:6:1:1152:1324
+GACAATCAGAAAGAGATTGCCGAGATGCAAAATGAG
+>HWI-EAS91_1_306UPAAXX:6:1:1614:2042
+GAAATGCCACAAGCCTCAATAGCAGGTTTAAGAGCC
+>HWI-EAS91_1_306UPAAXX:6:1:1398:439
+GATGGTTGGTTTATCGTTTTTGACACTCTCACGTTG
+>HWI-EAS91_1_306UPAAXX:6:1:955:616
+GACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGC
+>HWI-EAS91_1_306UPAAXX:6:1:1672:753
+GAATGCCAGCAATCTCTTTTTGAGTCTCATTTTGCT
+>HWI-EAS91_1_306UPAAXX:6:1:1195:1293
+GCAATGCGACAGGCTCATGCTGATGGTTGGTTTATC
+>HWI-EAS91_1_306UPAAXX:6:1:1074:755
+GCAAGAGTAAACATAGTGCCATGCTCAGGAACAAAG
+>HWI-EAS91_1_306UPAAXX:6:1:984:499
+GACTTAGTTCATCAGCAAACGCAGAATCAGCGGTAT
+>HWI-EAS91_1_306UPAAXX:6:1:1452:1833
+GCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGT
+>HWI-EAS91_1_306UPAAXX:6:1:863:710
+GAGTTCGATAATGGTGATATGTATGTTGACGGCCAT
+>HWI-EAS91_1_306UPAAXX:6:1:885:649
+GCAGAAGTTAACACTTTCGGATATTTCTGATGAGTC
+>HWI-EAS91_1_306UPAAXX:6:1:917:1214
+GACAGATGTATCCATCTGAATGCAATGAAGAAAACC
+>HWI-EAS91_1_306UPAAXX:6:1:892:1254
+GCTCAGGAAATGCAGCAGCAAGATAATCACGAGTAT
+>HWI-EAS91_1_306UPAAXX:6:1:1555:1005
+GCATTTGGCGCATAATCTCGGAAACCTGCTGTTGCT
+>HWI-EAS91_1_306UPAAXX:6:1:1637:1413
+GATGCTGTTCAACCACTAATAGGTAAGAAATCATGT
+>HWI-EAS91_1_306UPAAXX:6:1:1102:1567
+GGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAA
+>HWI-EAS91_1_306UPAAXX:6:1:799:1337
+GTATATGCACAAAATGAGATGCTTGCTTATCAACAG
+>HWI-EAS91_1_306UPAAXX:6:1:1353:1843
+GCAGACCCATAATGTCAATAGATGTGGTAGAAGTCG
+>HWI-EAS91_1_306UPAAXX:6:1:1196:789
+GCGGCATACGCTCGGCGCCAGTTTGAATATTAGACA
+>HWI-EAS91_1_306UPAAXX:6:1:1056:1676
+GTAAAATACTGACCAGCCGTTTGAGCTTGAGTAAGC
+>HWI-EAS91_1_306UPAAXX:6:1:1349:1836
+GGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTC
+>HWI-EAS91_1_306UPAAXX:6:1:1027:788
+GGTGTTAATGCCACTCCTCTCCCGACTGTTAACACT
+>HWI-EAS91_1_306UPAAXX:6:1:990:1283
+GCTTAGGGATTTTATTGGTATCAGGGTTAATCGTGC
+>HWI-EAS91_1_306UPAAXX:6:1:904:939
+GAGAAGTTAATGGATGAATTGGCACAATGCTACAAT
+>HWI-EAS91_1_306UPAAXX:6:1:1732:793
+GTCAACATACATATCACCATTATCGAACTCAACGCC
+>HWI-EAS91_1_306UPAAXX:6:1:1355:2003
+GTTAGACCAAACCATGAAACCAACATAAACATTATT
+>HWI-EAS91_1_306UPAAXX:6:1:1337:977
+GCACCAGAAACAAAACTAGGGGCGGCCTCATCAGGG
+>HWI-EAS91_1_306UPAAXX:6:1:1605:1175
+GGAGGTAAAACCTCTTATGACGCTGACAACCGTCCT
+>HWI-EAS91_1_306UPAAXX:6:1:1763:1192
+GACAGGCCGTTTGAATGTTGACGGGATGAACATAAT
+>HWI-EAS91_1_306UPAAXX:6:1:722:483
+GTTATTATACCGTCAAGGACTGTGTGACTATTGACT
+>HWI-EAS91_1_306UPAAXX:6:1:1760:1136
+GCAAAGCATTGGGATTATCATAAAACGCCTCTAATC
+>HWI-EAS91_1_306UPAAXX:6:1:1088:798
+GGAAACCTGCTGTTGCTTGGAAAGATTGGTGTTTTC
+>HWI-EAS91_1_306UPAAXX:6:1:633:1076
+GCTACTTCCCAAGAAGCTGTTCAGAATCAGAATGAG
+>HWI-EAS91_1_306UPAAXX:6:1:673:754
+GTCATGGAAGCGATAAAACTCTGCAGGTTGGATATT
+>HWI-EAS91_1_306UPAAXX:6:1:1759:2019
+GTAAAGGACGGTTGTCAGCGTCATAAGAGGTTTTAC
+>HWI-EAS91_1_306UPAAXX:6:1:1064:1797
+GCGGTTATCCATCTGCTTATGGAAGCCAAGCATTGG
+>HWI-EAS91_1_306UPAAXX:6:1:1112:1669
+GCTCATGCTGATGGTTGGTTTATCGTTTTTGACACT
+>HWI-EAS91_1_306UPAAXX:6:1:510:1447
+GCATTAAGCTCAGGAAATGCAGCAGCAAGATAATCA
+>HWI-EAS91_1_306UPAAXX:6:1:877:1573
+GTGCTATTGCTGGCGGTATTTCTTCTTCTTTTTTTT
+>HWI-EAS91_1_306UPAAXX:6:1:870:542
+GAATGTCACGCTGATTATTTTGACTTTGAGCGTATC
+>HWI-EAS91_1_306UPAAXX:6:1:966:384
+GCACCTGTTTTACAGACACCTAAAGCTACATCGTCA
+>HWI-EAS91_1_306UPAAXX:6:1:1186:1903
+GCCAGCGATAACCGGAGTAGTTGAAATGGTAATAAG
+>HWI-EAS91_1_306UPAAXX:6:1:1632:1742
+GCATCACCCATGCCTACAGTATTGTTATCGGTAGCC
+>HWI-EAS91_1_306UPAAXX:6:1:1521:559
+GAGAGCGCCAACGGCGTCCATCTCGAAGGAGTCGCC
+>HWI-EAS91_1_306UPAAXX:6:1:683:454
+GCTTATTATGTTCATCCCGTCAACATTCAAACGTCC
+>HWI-EAS91_1_306UPAAXX:6:1:112:1280
+GTTGGCGCTCTCCGTCTTTCTCCATTTCGTCGTGTC
+>HWI-EAS91_1_306UPAAXX:6:1:891:381
+GACCAGGGCGAGCGCCAGAACGTTTTTTACCTTTAG
+>HWI-EAS91_1_306UPAAXX:6:1:1348:958
+GATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTT
+>HWI-EAS91_1_306UPAAXX:6:1:1785:1915
+GCCCCGAAGGGGACNANAAATGGTTTTTAGAGAACG
+>HWI-EAS91_1_306UPAAXX:6:1:1418:42
+GTATGCCCATCGCAGTTCGCTACACGCAGGACGCTT
+>HWI-EAS91_1_306UPAAXX:6:1:1421:743
+GGTCAACGCTACCTGTAGGAAGTGTCCGCATAAAAT
+>HWI-EAS91_1_306UPAAXX:6:1:1079:790
+GCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGT
+>HWI-EAS91_1_306UPAAXX:6:1:663:740
+GGTATTAAGGATGAGTGTTCAAGATTGCTGGATGCC
+>HWI-EAS91_1_306UPAAXX:6:1:1245:413
+GTTTGAATGTTGACGGGATGAACATAATAAGCAATG
+>HWI-EAS91_1_306UPAAXX:6:1:1378:1035
+GCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGG
+>HWI-EAS91_1_306UPAAXX:6:1:903:1746
+GTACGGGGAAGGACGTCAATAGTCACACAGTCCTTG
+>HWI-EAS91_1_306UPAAXX:6:1:1713:1134
+GGCGTACGGGGAAGGACGTCAATAGTCACACAGTCC
+>HWI-EAS91_1_306UPAAXX:6:1:1246:1887
+GCTCTAATCTCTGGGCATCTGGCTATGATGTTGATG
+>HWI-EAS91_1_306UPAAXX:6:1:872:1731
+GGGCGGCCTCATCAGGGTTAGGAACATTAGAGCCTT
+>HWI-EAS91_1_306UPAAXX:6:1:1714:1582
+GCTTTCCTGCTCCTGTTGAGTTTATTGCTTCCGTCT
+>HWI-EAS91_1_306UPAAXX:6:1:1785:763
+GNCGAGAAATAAAANNNTGAAACATGATTAAANTCC
+>HWI-EAS91_1_306UPAAXX:6:1:1684:542
+GAAAAGACAGAATCTCTTCCAAGAGCTTGATGCGGT
+>HWI-EAS91_1_306UPAAXX:6:1:1581:1665
+GACTTTGAGCGTATCGAGGCTCTTAAACCTGCTATT
+>HWI-EAS91_1_306UPAAXX:6:1:901:1581
+GTGCTGATATTGCTTTTGATGCCGACCCTAAATTTT
+>HWI-EAS91_1_306UPAAXX:6:1:1128:239
+GGTTATTATACCGTCAAGGACTGTGTGACTATTGAC
+>HWI-EAS91_1_306UPAAXX:6:1:969:441
+GGTAAGAAATCATGAGTCAAGTTACTGAACAATCCG
+>HWI-EAS91_1_306UPAAXX:6:1:630:1087
+GCCACCATGATTATGACCAGTGTTTCCAGTCCGTTC
+>HWI-EAS91_1_306UPAAXX:6:1:606:1852
+GGAGACAAATAATCTCTTTAATAACCTGATTCAGCG
+>HWI-EAS91_1_306UPAAXX:6:1:489:1315
+GAAAGCTCAGTCTCAGGAGGAAGCGGAGCAGTCCAC
+>HWI-EAS91_1_306UPAAXX:6:1:465:1983
+GAGCCAATACCATCAGCTTTACCGTCTTTCCAGAAA
+>HWI-EAS91_1_306UPAAXX:6:1:559:1028
+GAGTGCTTAATCCAACTTACCAAGCTGGGTTACGAC
+>HWI-EAS91_1_306UPAAXX:6:1:1655:1413
+GTATGTTGACGGCCATAAGGCTGCTTCTGACGTTCG
+>HWI-EAS91_1_306UPAAXX:6:1:980:605
+GCCGTTTGAATGTTGACGGGATGAACATAATAAGCA
+>HWI-EAS91_1_306UPAAXX:6:1:1629:1865
+GAAAAGCGGCATGGTCAATATAACCAGTAGTGTTAT
+>HWI-EAS91_1_306UPAAXX:6:1:1180:1920
+GCACTCCGTGGACAGATTTGTCATTGTGAGCATTTT
+>HWI-EAS91_1_306UPAAXX:6:1:1116:383
+GCGCAGGAAACACTGACGTTCTTACTGACGCAGAAG
+>HWI-EAS91_1_306UPAAXX:6:1:906:2041
+GTCACGTTTATGGTGAACAGTGGATTAAGTTCATGA
+>HWI-EAS91_1_306UPAAXX:6:1:1514:157
+GTCAATAGATGTGGTAGAAGTCGTCATTTGGCGTGG
+>HWI-EAS91_1_306UPAAXX:6:1:1032:1857
+GCAATCGCCGCCAGTTAAATAGCTTGCAAAATACGT
+>HWI-EAS91_1_306UPAAXX:6:1:638:609
+GATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAT
+>HWI-EAS91_1_306UPAAXX:6:1:74:750
+GATAATCACGAGTATCCTTTCCTTTATCATCTTCAT
+>HWI-EAS91_1_306UPAAXX:6:1:486:822
+GTTGACGATGTAGCTTTAGGTGTCTTTAAAACAGGT
+>HWI-EAS91_1_306UPAAXX:6:1:899:473
+GAACAGCATCGGACTCAGATAGTAATCCACGCTCTT
+>HWI-EAS91_1_306UPAAXX:6:1:1613:197
+GTGACATTCAGAAGGGTAATAAGAACGAACCATAAA
+>HWI-EAS91_1_306UPAAXX:6:1:326:1747
+GTTGAGGCTTTCGTTTATTGTACGCTTTGCTTTTTT
+>HWI-EAS91_1_306UPAAXX:6:1:1487:526
+GCAAAATACGTGGCCTTATGGTTACAGTATGCCCAT
+>HWI-EAS91_1_306UPAAXX:6:1:629:665
+GAAATGCAGCAGCAAGATAATCACGAGTATCCTTTC
+>HWI-EAS91_1_306UPAAXX:6:1:766:744
+GGCCGTCAACATACATATCACCATTATCGAACTCAA
+>HWI-EAS91_1_306UPAAXX:6:1:391:1771
+GTGGTTGATATTTTTCATGGTATTGATAAATCTTTT
+>HWI-EAS91_1_306UPAAXX:6:1:591:1102
+GCTTTGCGTGACTATTTTCGTGATATTGTTCGTTTG
+>HWI-EAS91_1_306UPAAXX:6:1:917:664
+GCCATGATGGTGGTTATTATACCGTCAAGGACTGTG
+>HWI-EAS91_1_306UPAAXX:6:1:217:737
+GTTCAGTTGTTGCATTGGAATATTCAGTTTAAATTT
+>HWI-EAS91_1_306UPAAXX:6:1:1047:839
+GACCATTCAAAGGATAAACATCATAGGCAGTCGGGG
+>HWI-EAS91_1_306UPAAXX:6:1:558:1040
+GCCACCAGCAAGAGCAGAAGCAATACCGCCAGCAAT
+>HWI-EAS91_1_306UPAAXX:6:1:1207:524
+GCCAATACCATCAGCTTTACCGTCTTTCCAGAAATT
+>HWI-EAS91_1_306UPAAXX:6:1:708:1634
+GCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAG
+>HWI-EAS91_1_306UPAAXX:6:1:576:1851
+GTGCTATGGCTAAAGCTGGTAAAGGACTTCTTGAAG
+>HWI-EAS91_1_306UPAAXX:6:1:906:460
+GTAGACATTTTTACTTTTTATGTCCCTCATCGTCAC
+>HWI-EAS91_1_306UPAAXX:6:1:693:1260
+GCGAAAGGTCGCAAAGTAAGAGCTTCTCGAGCTGCG
+>HWI-EAS91_1_306UPAAXX:6:1:1373:286
+GGACACTTCCTACAGGTAGCGTTGACCCTAATTTTG
+>HWI-EAS91_1_306UPAAXX:6:1:762:41
+GATACTTGGAACAATTTCTGGAAAGACGGTAAAGCT
+>HWI-EAS91_1_306UPAAXX:6:1:475:1091
+GTCACACAGTCCTTGACGGTATAATAACCACCATCT
+>HWI-EAS91_1_306UPAAXX:6:1:791:627
+GCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTACC
+>HWI-EAS91_1_306UPAAXX:6:1:336:1791
+GAAGGAGTCGCCAGCGATAACCGGAGTAGTTGAAAT
+>HWI-EAS91_1_306UPAAXX:6:1:1483:943
+GCACGTAATTTTTGACGCACGTTTTCTTCTGCGTCT
+>HWI-EAS91_1_306UPAAXX:6:1:641:1071
+GATGGGCATACTGTAACCATAAGGCCACGTATTTTG
+>HWI-EAS91_1_306UPAAXX:6:1:196:755
+GAACGCCCTCTTAAGGATATTCGCGATGAGTATAAT
+>HWI-EAS91_1_306UPAAXX:6:1:463:1398
+GTCATAAGAGGTTTTACCTCCAAATGAAGAAATAAC
+>HWI-EAS91_1_306UPAAXX:6:1:1559:460
+GCTCACAATGACAAATCTGTCCACGGAGTGCTTAAT
+>HWI-EAS91_1_306UPAAXX:6:1:1625:1561
+GAGGAGTGGCATTAACACCATCCTTCATGAACTTAC
+>HWI-EAS91_1_306UPAAXX:6:1:1729:1588
+GCTGATAAAGGAAAGGATACTCGTGATTATCTTGCT
+>HWI-EAS91_1_306UPAAXX:6:1:945:393
+GGCCTCATCAGGGTTAGGAACATTAGAGCCTTGAAT
+>HWI-EAS91_1_306UPAAXX:6:1:298:1391
+GTAAAGTTAGACCAAACCATGAAACCAACATAAACA
+>HWI-EAS91_1_306UPAAXX:6:1:1270:1500
+GAATTACTACTGCTTGTTTACGAATTAAATATATGT
+>HWI-EAS91_1_306UPAAXX:6:1:481:1546
+GCTGGCATTCAGTCGGCGACTTCACGCCAGAATACG
+>HWI-EAS91_1_306UPAAXX:6:1:473:1729
+GTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAT
+>HWI-EAS91_1_306UPAAXX:6:1:801:1831
+GCTGAGGTTGACTTAGTTCATCAGCAAACGCAGAAT
+>HWI-EAS91_1_306UPAAXX:6:1:536:639
+GCCGACCCTAAATTTTTTGCCTGTTTGGTTCTCTTT
+>HWI-EAS91_1_306UPAAXX:6:1:259:938
+GTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTG
+>HWI-EAS91_1_306UPAAXX:6:1:907:1513
+GGCATGGGTGATGCTGGTATTAAATCTGCCATTCAC
+>HWI-EAS91_1_306UPAAXX:6:1:372:1409
+GATGAGTATAATTACCCCAAAAAGAAAGGTATTAAG
+>HWI-EAS91_1_306UPAAXX:6:1:485:1626
+GATGGCAGCAACGGAAACCATAACGAGCATCATCTT
+>HWI-EAS91_1_306UPAAXX:6:1:583:1679
+GCTCAAAGTCAAAATAATCAGCGTGACATTCAGAAG
+>HWI-EAS91_1_306UPAAXX:6:1:690:1610
+GACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTT
+>HWI-EAS91_1_306UPAAXX:6:1:257:918
+GCAGGCTGGCACTTCTGCCGTTTCTGATAAGTTTCT
+>HWI-EAS91_1_306UPAAXX:6:1:818:33
+GTGTTAATGCCACTCCTCTCCCGACTGTTAACTCTG
+>HWI-EAS91_1_306UPAAXX:6:1:541:1242
+GGGATTATCATAAAACGCCTCTAATCGGTCGTCAGC
+>HWI-EAS91_1_306UPAAXX:6:1:1014:279
+GTAAAAATGTCTACAGTAGAGTCAATAGCAAGGCCC
+>HWI-EAS91_1_306UPAAXX:6:1:672:1790
+GGCCGTTTGAATGTTGACGGGATGAACATAATAAGC
+>HWI-EAS91_1_306UPAAXX:6:1:708:464
+GGAGACAAATAATCTCTTTAATAACCTGATTCAGCG
+>HWI-EAS91_1_306UPAAXX:6:1:633:1486
+GGGAAAGGTCATGCGGCATACGCTCGGCGCCAGTTT
+>HWI-EAS91_1_306UPAAXX:6:1:328:696
+GTTCCGACTACCCTCCCGACTGCCTATGATGTTTAT
+>HWI-EAS91_1_306UPAAXX:6:1:259:1389
+GCGTACTTATTCGCCACCATGATTATTACCAGTGTT
+>HWI-EAS91_1_306UPAAXX:6:1:1315:41
+GCTTTCCGTGATGTCACAGCCTGCTTTGATGTGTCG
+>HWI-EAS91_1_306UPAAXX:6:1:1647:549
+GCTTAATCCAACTTACCAAGCTGGGTTACGACGCGC
+>HWI-EAS91_1_306UPAAXX:6:1:300:886
+GTTCTTGGTCAGTATGCAAATTAGCATAAGCAGCTT
+>HWI-EAS91_1_306UPAAXX:6:1:317:1411
+GTACGCTGTACTTTGTGGGATACCCTCGCTTTCCTT
+>HWI-EAS91_1_306UPAAXX:6:1:321:1819
+GGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGT
+>HWI-EAS91_1_306UPAAXX:6:1:631:70
+GTGGATTACTATCTGAGTCCGATGCTGTTCAACCAC
+>HWI-EAS91_1_306UPAAXX:6:1:624:1040
+GCTGGCGACTCCTTCGAGATGGACGCCGTTTGCGCT
+>HWI-EAS91_1_306UPAAXX:6:1:662:1187
+GGGAGAGGAGTGGCATTAACACCATCCTTCATGACC
+>HWI-EAS91_1_306UPAAXX:6:1:1440:1959
+GAATCAGCGGTATGGCTCCTCTCCTATTTTTGCTTC
+>HWI-EAS91_1_306UPAAXX:6:1:458:1629
+GCTGGTGGCGCCATGTCTAAATTTTTTGGAGGCGGT
+>HWI-EAS91_1_306UPAAXX:6:1:216:790
+GGGATGAAAATGCTCACAATGACAAATCTGTCCACG
+>HWI-EAS91_1_306UPAAXX:6:1:1407:1174
+TTACCTATTAGTGGTTGAACAGCATCGGACTCAGAT
+>HWI-EAS91_1_306UPAAXX:6:1:999:1790
+GTCCTGCGTGTAGCGAACTGCGATGGGCATACTGTC
+>HWI-EAS91_1_306UPAAXX:6:1:141:1994
+GGCTTTTTTATGGTTCGTTCTTATTACCCTTCTTAT
+>HWI-EAS91_1_306UPAAXX:6:1:225:465
+GTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGC
+>HWI-EAS91_1_306UPAAXX:6:1:649:1760
+GACCCATAATGTCAATAGATGTGGTAGAAGTCGTCT
+>HWI-EAS91_1_306UPAAXX:6:1:300:986
+GTTGAACACGACCAGAAAACTGGCCTAACGACGTTT
+>HWI-EAS91_1_306UPAAXX:6:1:478:605
+GAGACTGAGCTTTCTCGCCAAATGACGACTTCTACC
+>HWI-EAS91_1_306UPAAXX:6:1:622:395
+GGTAGCTTTAAGCGGCTCACCTTTAGCATCAACAGG
+>HWI-EAS91_1_306UPAAXX:6:1:1701:574
+GTAAAGCCTCTACGCGATTTCATAGTGGAGGCCTCC
+>HWI-EAS91_1_306UPAAXX:6:1:646:59
+GGAAGTGTCCGCATAAAATGCACCGCATGGAAATGT
+>HWI-EAS91_1_306UPAAXX:6:1:284:2031
+GACAGAATCGTTAGTTGATGGCGAAAGGTCGCAAAG
+>HWI-EAS91_1_306UPAAXX:6:1:22:1009
+GATGGATACATCTGTCAACGCCGCTAATCAGGTTGT
+>HWI-EAS91_1_306UPAAXX:6:1:47:1826
+GCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCG
+>HWI-EAS91_1_306UPAAXX:6:1:1025:1236
+TGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGT
+>HWI-EAS91_1_306UPAAXX:6:1:773:591
+GAGCAGGAAAGCGAGGGTATCCCACAAAGTCCAGCG
+>HWI-EAS91_1_306UPAAXX:6:1:1753:527
+GGTGGCATTCAAGGTGATGTGCTTGCTACCGATAAC
+>HWI-EAS91_1_306UPAAXX:6:1:426:1717
+GTAGCGCCAATATGAGAAGAGCCATACCGCTGATTC
+>HWI-EAS91_1_306UPAAXX:6:1:959:818
+TTCTGATAAGCTGGTTCTCACTTCTGTTACTCCAGC
+>HWI-EAS91_1_306UPAAXX:6:1:459:1344
+GCCTATGATGTTTATCCTTTGAATGGTCGCCATGAT
+>HWI-EAS91_1_306UPAAXX:6:1:973:1367
+TTCGTGATGAGTTTGTATCTGTTACTGATAAGTTAT
+>HWI-EAS91_1_306UPAAXX:6:1:201:871
+GATTAGAGGCGTTTTATGATAATCCCAATGCTTTTC
+>HWI-EAS91_1_306UPAAXX:6:1:713:1672
+GGCGTACGGGGAAGGACGTCAATAGTCACACAGTCC
+>HWI-EAS91_1_306UPAAXX:6:1:444:1435
+TTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGTG
+>HWI-EAS91_1_306UPAAXX:6:1:288:1136
+GCCTTCCATGATGAGACAGGCCGTTTTAATTTTTTC
+>HWI-EAS91_1_306UPAAXX:6:1:1653:225
+GCAAGGCCACGACGCAATGGAGAAAGACGGAGAGCG
+>HWI-EAS91_1_306UPAAXX:6:1:537:1764
+GCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAA
+>HWI-EAS91_1_306UPAAXX:6:1:196:1854
+GTATCGAGGCTCTTAAACCTGCTATTTAGGCTTTTT
+>HWI-EAS91_1_306UPAAXX:6:1:312:1707
+GCGTCATAAGAGGTTTTACCTCCAAATGAAGAAATA
+>HWI-EAS91_1_306UPAAXX:6:1:651:183
+GTATGTTTCTCCTGCTTATCACCTTCTTGAAGGCTT
+>HWI-EAS91_1_306UPAAXX:6:1:295:694
+GTGATTACTTCATGCAGCGTTACCGTGATGTTATTT
+>HWI-EAS91_1_306UPAAXX:6:1:330:1895
+GCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTG
+>HWI-EAS91_1_306UPAAXX:6:1:590:331
+GAAATTTCTATGAATGATGTTTTCCGTTCTGGTGAT
+>HWI-EAS91_1_306UPAAXX:6:1:481:1687
+GCAGATTGCGATAAACGGTCACATTAAATTTAACCT
+>HWI-EAS91_1_306UPAAXX:6:1:1112:1279
+TGTGCATATACCTGGTCTTTCGTATTCTGTCGTGAT
+>HWI-EAS91_1_306UPAAXX:6:1:1099:1216
+TTAGAGCGCATGACAAGTAAAGGACGGTTGTCAGCG
+>HWI-EAS91_1_306UPAAXX:6:1:221:1238
+GTATCCTTTCCTTTATCATCGGCAGACTTTTCACCT
+>HWI-EAS91_1_306UPAAXX:6:1:1015:364
+GCCAGCGATAACCGGAGTAGTTGAAATGGTAATAAG
+>HWI-EAS91_1_306UPAAXX:6:1:735:1806
+TGTTATTAATATCAAGTTGGGGGAGCACATTGTAGC
+>HWI-EAS91_1_306UPAAXX:6:1:320:411
+GCTCTTGGAAGAGATTCTGTCTTTTCGTATGCAGTG
+>HWI-EAS91_1_306UPAAXX:6:1:1273:1031
+TTAAGGATATTCGCGATGAGTATAATTACCCCAAAA
+>HWI-EAS91_1_306UPAAXX:6:1:1456:1088
+AATAATCAGCGTGACATTCAGAAGGGTAATAAGAAC
+>HWI-EAS91_1_306UPAAXX:6:1:1365:307
+GACGGCCATAAGGCTGCTTCTGACGTTCGTGATGAG
+>HWI-EAS91_1_306UPAAXX:6:1:478:252
+GATGCGGTTATCCATCTGCTTATTGAAGCCAAGCAT
+>HWI-EAS91_1_306UPAAXX:6:1:915:1232
+TATTAATAACACTATAGACCACCGCCCCGAAGGGGC
+>HWI-EAS91_1_306UPAAXX:6:1:680:1357
+TTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGC
+>HWI-EAS91_1_306UPAAXX:6:1:238:1279
+GCCGAAGCCCCTGCAATTAAAATTGTTGACCACCTA
+>HWI-EAS91_1_306UPAAXX:6:1:1583:35
+GCAAATTAGCATAAGCAGCTTGCAGACCCATAATGT
+>HWI-EAS91_1_306UPAAXX:6:1:502:283
+GTTCCGACTACCCTCCCGACTGCCTATGATGTTTAT
+>HWI-EAS91_1_306UPAAXX:6:1:418:1730
+GAAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGT
+>HWI-EAS91_1_306UPAAXX:6:1:596:647
+GCCTCAACGCAGCGACGAGCACGAGAGCGGTCAGTA
+>HWI-EAS91_1_306UPAAXX:6:1:92:1591
+GTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCC
+>HWI-EAS91_1_306UPAAXX:6:1:430:1938
+GCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGTCC
+>HWI-EAS91_1_306UPAAXX:6:1:212:527
+GGTATTGATAAAGCTGTTGCCGATACTTGTAACAAT
+>HWI-EAS91_1_306UPAAXX:6:1:594:942
+GACGACATTAGAAATATCCTTTGCAGTAGCGCCAAT
+>HWI-EAS91_1_306UPAAXX:6:1:169:1774
+GCCTTCCATGATGAGACAGGCCGTTTTAATTTTTAC
+>HWI-EAS91_1_306UPAAXX:6:1:1090:210
+GGAGAGCGCCAACGGCGTCCATCTCGAAGGAGTCGC
+>HWI-EAS91_1_306UPAAXX:6:1:589:96
+GGCGGCCCCATCAGGGTTAGGAACATTAGAGCCTTG
+>HWI-EAS91_1_306UPAAXX:6:1:1477:1231
+TAGGAACATTAGAGCCTTGAATGGCAGATTTAATAC
+>HWI-EAS91_1_306UPAAXX:6:1:707:1076
+TCTGACGTTCGTGATGAGTTTGTATCTTTTTCTTTG
+>HWI-EAS91_1_306UPAAXX:6:1:749:1715
+GAACATAATAAGCAATGACGGCAGCAATAAACTCAA
+>HWI-EAS91_1_306UPAAXX:6:1:1738:1884
+GCTCACCTTTAGCATCAACAGGCCACAACCAACCAG
+>HWI-EAS91_1_306UPAAXX:6:1:1160:1088
+TCACATTTTGTTCATGGTAGAGATTCTCTTGTTGAC
+>HWI-EAS91_1_306UPAAXX:6:1:517:119
+GCAAGGCTAATGATTCACACGCCGACTGCTATCAGT
+>HWI-EAS91_1_306UPAAXX:6:1:1472:716
+TGGTAATGGTGGTTTTCTTCATTTCATTCAGTTTTT
+>HWI-EAS91_1_306UPAAXX:6:1:281:441
+GAGCAGTAGACTCCTTCTGTTGATAAGCAAGCATCT
+>HWI-EAS91_1_306UPAAXX:6:1:1101:324
+AATACCATCAGCTTTACCGTCTTTCCAGAAATTGTT
+>HWI-EAS91_1_306UPAAXX:6:1:1225:1494
+TTCTCAAATCCGGCGTCAACCATACCAGCAGAGGAA
+>HWI-EAS91_1_306UPAAXX:6:1:1509:1025
+TTCTTGCTGCCGAGGGTCGCAAGGCTATTGTTTCAC
+>HWI-EAS91_1_306UPAAXX:6:1:592:510
+GATACCAATAAAATCCCTAAGCATTTGTTTCTGGTT
+>HWI-EAS91_1_306UPAAXX:6:1:324:1729
+GAACAAAGAAACGCGGCACAGAATGTTTATAGGTCT
+>HWI-EAS91_1_306UPAAXX:6:1:128:1925
+GGAACAACTCACTAAAAACCAAGCTGTCGCTACTTC
+>HWI-EAS91_1_306UPAAXX:6:1:786:893
+TACGGGGAAGGACGTCAATAGTCACACAGTCCTTGC
+>HWI-EAS91_1_306UPAAXX:6:1:248:955
+GCTACAATGTGCTCCCCCAACTTGATATTAATAACA
+>HWI-EAS91_1_306UPAAXX:6:1:388:1127
+GATATTGGTCGTATGGTTCTTGCTGCCTAGTGTCTC
+>HWI-EAS91_1_306UPAAXX:6:1:721:1156
+TCTGGTTGGTTGTGGCCTTTTTATGCTAAATGTTAG
+>HWI-EAS91_1_306UPAAXX:6:1:1564:1468
+TTACTTTTTATGTCCCTCATCGTCACGTTTATGTTG
+>HWI-EAS91_1_306UPAAXX:6:1:750:77
+GGCTCATTCTGATTCTGAACAGCTTCTTGGGAAGTA
+>HWI-EAS91_1_306UPAAXX:6:1:405:487
+GTTGGATTAAGCACTCCGTGGACAGATTTGTCATTT
+>HWI-EAS91_1_306UPAAXX:6:1:836:1204
+TTGCTTCTGCTCTTGCTTGTGGCGCCATGTCTAAAT
+>HWI-EAS91_1_306UPAAXX:6:1:224:1548
+GCTGCCGTCATTGCTTATTATGTTCATCCCTTCAAC
+>HWI-EAS91_1_306UPAAXX:6:1:931:1015
+TTAAGGTACTGAATCTCTTTAGTCGCAGTAGGCGGT
+>HWI-EAS91_1_306UPAAXX:6:1:329:579
+GTCCCTCATCGTCACGTTTATGGTGAACAGTGGATT
+>HWI-EAS91_1_306UPAAXX:6:1:260:1145
+GCTTGCGTTTATGGTACGCTGGACTTTTTGTGATAC
+>HWI-EAS91_1_306UPAAXX:6:1:1523:1253
+TTGGTAAAATACTGACCAGCCGTTTGAGCTTGAGTA
+>HWI-EAS91_1_306UPAAXX:6:1:326:1271
+GACCACTCGCGATTCAATCATGACTTCGTGATAAAT
+>HWI-EAS91_1_306UPAAXX:6:1:213:622
+GCACCTGTTTTACAGACACCTAAAGCTACATCGTCA
+>HWI-EAS91_1_306UPAAXX:6:1:274:712
+GCGGTCAAAAAGCCGCCTCCGGTGGCATTCAAGGTG
+>HWI-EAS91_1_306UPAAXX:6:1:1549:627
+TATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAATGT
+>HWI-EAS91_1_306UPAAXX:6:1:1714:737
+TCTTTCGTATTCTGGCGTGAAGTCGCCGACTGAATG
+>HWI-EAS91_1_306UPAAXX:6:1:760:1217
+TACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTT
+>HWI-EAS91_1_306UPAAXX:6:1:174:768
+GTTGGCTGACGACCGATTAGAGGCGTTTTTTTATAT
+>HWI-EAS91_1_306UPAAXX:6:1:172:1412
+GGTCGGCAGATTGCGATAAACGTTCACATTAAATTT
+>HWI-EAS91_1_306UPAAXX:6:1:1393:869
+TTCATCCCGTCAACATTCAAACGGCCTGTCTCATCT
+>HWI-EAS91_1_306UPAAXX:6:1:301:481
+GTTATAGATATTCAAATAACCCTGAAACAAATGCTT
+>HWI-EAS91_1_306UPAAXX:6:1:648:1093
+TAACGCTGCATGAAGTAATCACGTTCTTGGTCAGTT
+>HWI-EAS91_1_306UPAAXX:6:1:1233:591
+TTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCT
+>HWI-EAS91_1_306UPAAXX:6:1:540:1415
+TTATTAAAGAGATTATTTTTCTCCAGCCACTTATGT
+>HWI-EAS91_1_306UPAAXX:6:1:151:1792
+GCAAGCTGCTTATGCTAATTTGCATACTGACCAAGA
+>HWI-EAS91_1_306UPAAXX:6:1:748:1378
+TGGATTACTATCTGAGTCCGATGCTGTTCAACCACT
+>HWI-EAS91_1_306UPAAXX:6:1:1526:1479
+TGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCC
+>HWI-EAS91_1_306UPAAXX:6:1:985:1093
+TAACCGTCTTCTCGTTCTCTAAAAACCATTTTTCTT
+>HWI-EAS91_1_306UPAAXX:6:1:480:1378
+TCAACCTCAGCACTAACCTTGCGAGTCATTTCTTTG
+>HWI-EAS91_1_306UPAAXX:6:1:903:753
+TGTGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAAG
+>HWI-EAS91_1_306UPAAXX:6:1:1697:1737
+GGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGT
+>HWI-EAS91_1_306UPAAXX:6:1:803:1037
+TGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCTACT
+>HWI-EAS91_1_306UPAAXX:6:1:1727:1244
+TTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCT
+>HWI-EAS91_1_306UPAAXX:6:1:253:1162
+GCATTTAGTAGCGGTAAAGTTTGACCAAACCATTAT
+>HWI-EAS91_1_306UPAAXX:6:1:216:856
+GTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCT
+>HWI-EAS91_1_306UPAAXX:6:1:825:886
+TCCCACAAAGTCCAGCGTACCATAAACGCAAGCCTC
+>HWI-EAS91_1_306UPAAXX:6:1:1699:962
+TGATTTCGATTTTCTGACGAGTAACAAAGTTTGGAT
+>HWI-EAS91_1_306UPAAXX:6:1:1210:625
+TCAGATAGTAATCCACGCTCTTTTAAAATGTCAACA
+>HWI-EAS91_1_306UPAAXX:6:1:538:616
+TAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGT
+>HWI-EAS91_1_306UPAAXX:6:1:184:1849
+GCTCACCTTTAGCATCAACAGGCCACAACCAACCAG
+>HWI-EAS91_1_306UPAAXX:6:1:1636:1103
+TATCTGACTTTTTGTTAACGTATTTAGCCACATAGA
+>HWI-EAS91_1_306UPAAXX:6:1:605:223
+GGTTATTTGAATATCTATAACAACTATTTTAAATCG
+>HWI-EAS91_1_306UPAAXX:6:1:256:1052
+GGTAAAGGACTTCTTGAAGGTACGTTGCAGTCTGGC
+>HWI-EAS91_1_306UPAAXX:6:1:300:1515
+GCCATGATGGTGGTTATTATACCGTCAAGGACTTTT
+>HWI-EAS91_1_306UPAAXX:6:1:1684:1320
+TGCTTGGCTTCCATAAGCAGATGGATAACCGCATCA
+>HWI-EAS91_1_306UPAAXX:6:1:1186:895
+TCAGATGGATACATCTGTCAACGCCGCTAATCAGGT
+>HWI-EAS91_1_306UPAAXX:6:1:1463:754
+TCACTTCTGTTACTCCAGCTTCTTCGGCACCTGTTT
+>HWI-EAS91_1_306UPAAXX:6:1:808:1053
+TGTCCACGGAGTGCTTAATCCAACTTACCAAGCTGG
+>HWI-EAS91_1_306UPAAXX:6:1:960:1218
+TTTCTAATGTCGTCACTGATGCTGCTTCTGTTGTTT
+>HWI-EAS91_1_306UPAAXX:6:1:521:1646
+GGAAAACGAACAAGCGCAAGAGTAAACATAGTGCCA
+>HWI-EAS91_1_306UPAAXX:6:1:289:1885
+GCCAGCGATAACCGGAGTAGTTGAAATGGTAATAAG
+>HWI-EAS91_1_306UPAAXX:6:1:471:170
+GGTCAGTTCCATCAACATCATAGCCAGATGCCCAGA
+>HWI-EAS91_1_306UPAAXX:6:1:828:754
+TTTGCGTGACTATTTTCGTGATATTGTTCGTATGGT
+>HWI-EAS91_1_306UPAAXX:6:1:924:1679
+TTTAATGTGACCGTTTATCGCAATCTGCCGACCACT
+>HWI-EAS91_1_306UPAAXX:6:1:837:901
+TGCATTTTAGTAAGCTCTTTTTGATTCTCAAATCCG
+>HWI-EAS91_1_306UPAAXX:6:1:543:16
+GCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTC
+>HWI-EAS91_1_306UPAAXX:6:1:1482:578
+TCTTTAGCTCCTAGACCTTTAGCAGCAAGGTCCATA
+>HWI-EAS91_1_306UPAAXX:6:1:1254:1668
+TTATGCGCCTTCGTATGTTTCTCCTGCTTATCACCT
+>HWI-EAS91_1_306UPAAXX:6:1:1402:898
+TCATGAGTCAAGTTACTGAACAATCCGTACGTTTCC
+>HWI-EAS91_1_306UPAAXX:6:1:764:1534
+TTATACCGTCAAGGACTGTGTGACTATTGACGTCCT
+>HWI-EAS91_1_306UPAAXX:6:1:681:1079
+TGGCGAATAAGTACGCGTTCTTGCAAATCACCAGAA
+>HWI-EAS91_1_306UPAAXX:6:1:672:1350
+TTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTT
+>HWI-EAS91_1_306UPAAXX:6:1:1266:493
+TGACCAGCCGTTTGAGCTTGAGTAAGCATTTGGCGC
+>HWI-EAS91_1_306UPAAXX:6:1:118:238
+GACGGTATAATAACCACCATCATGGCGACCATTCAA
+>HWI-EAS91_1_306UPAAXX:6:1:699:433
+TTATTGCCCGGCGTACGGGGAAGGACGTCAATAGTC
+>HWI-EAS91_1_306UPAAXX:6:1:708:1387
+TGCTTCTGACGTTCGTGATGAGTTTGTATCTGTTAC
+>HWI-EAS91_1_306UPAAXX:6:1:498:1085
+TTATGATAATCCCAATGCTTTGCGTGACTATTTTCT
+>HWI-EAS91_1_306UPAAXX:6:1:1101:1301
+TCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAT
+>HWI-EAS91_1_306UPAAXX:6:1:261:213
+GAATGGTCGCCATGATGGTGGTTATTATACCGTCAC
+>HWI-EAS91_1_306UPAAXX:6:1:1287:1267
+TGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGT
+>HWI-EAS91_1_306UPAAXX:6:1:744:331
+TTAATGGATGAATTGGCACAATGCTACAATGTGCTC
+>HWI-EAS91_1_306UPAAXX:6:1:614:814
+TGTCAGCGTCATAAGAGGTTTTACCTCCAAATGAAG
+>HWI-EAS91_1_306UPAAXX:6:1:1362:1063
+TAAACGCAAGCCTCAACGCAGCGACGAGCACGAGAG
+>HWI-EAS91_1_306UPAAXX:6:1:1238:1508
+TCAACTAACGATTCTGTCAAAAACTGACGCGTTGGT
+>HWI-EAS91_1_306UPAAXX:6:1:904:1130
+TTATCGCAATCTGCCGACCACTCGCGATTCAATCAT
+>HWI-EAS91_1_306UPAAXX:6:1:465:216
+GACCATGCCGCTTTTCTTGGCACGATTAACCCTTAT
+>HWI-EAS91_1_306UPAAXX:6:1:844:628
+TAATGTCAATAGATGTGGTAGAAGTCGTCATTTGGC
+>HWI-EAS91_1_306UPAAXX:6:1:684:1444
+TATCCCACAAAGTCCAGCGTACCATAAACGCAAGCC
+>HWI-EAS91_1_306UPAAXX:6:1:515:1373
+TAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCT
+>HWI-EAS91_1_306UPAAXX:6:1:764:1667
+TTGAGTTCGATAATGGTGATATGTATGTTGACGTCC
+>HWI-EAS91_1_306UPAAXX:6:1:1722:598
+TGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCT
+>HWI-EAS91_1_306UPAAXX:6:1:670:1188
+TTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGT
+>HWI-EAS91_1_306UPAAXX:6:1:1682:1705
+TAGCCACATAGAAACCAACAGCCATATAACTGGTAG
+>HWI-EAS91_1_306UPAAXX:6:1:1008:1616
+TCCTTTACTTGTCATGCGCTCTAATCTCTGTGCATC
+>HWI-EAS91_1_306UPAAXX:6:1:490:1220
+TAAAAATTTTAATTTTTGCCGCTGAGGGGTTGACCT
+>HWI-EAS91_1_306UPAAXX:6:1:891:1437
+TAATGGTGATATGTATGTTTACGTCCATAAGGCTGT
+>HWI-EAS91_1_306UPAAXX:6:1:1310:321
+TCAATCCCCAATGCTTGGCTTCCATAAGCAGATGGT
+>HWI-EAS91_1_306UPAAXX:6:1:827:1597
+TGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTC
+>HWI-EAS91_1_306UPAAXX:6:1:1062:1158
+TAGAGTCAATAGCAAGGCCACGACGCAATGGAGAAA
+>HWI-EAS91_1_306UPAAXX:6:1:1419:208
+TGGCGCATAATCTCGGAAACCTGCTGTTGCTTGGAA
+>HWI-EAS91_1_306UPAAXX:6:1:691:1018
+AAATATCAACCACACCAGAAGCAGCATCAGTGACGA
+>HWI-EAS91_1_306UPAAXX:6:1:374:113
+GATAAAGCTGTTGCCGATACTTGGAACAATTTCTGT
+>HWI-EAS91_1_306UPAAXX:6:1:1720:784
+TGAGGATAAATTATGTCTAATATTCAAACTGGCGCC
+>HWI-EAS91_1_306UPAAXX:6:1:1424:1394
+ATAAAAATGATTGGCGTATCCAACCTGCAGAGTTTT
+>HWI-EAS91_1_306UPAAXX:6:1:1063:1760
+TAGTTCATCAGCAAACGCAGAATCAGCGGTATGGCT
+>HWI-EAS91_1_306UPAAXX:6:1:1235:729
+TTTTTATGTCCCTCATCGTCACGTTTATGGTGAACA
+>HWI-EAS91_1_306UPAAXX:6:1:167:1507
+TAGTGTTATTAATATCAAGTTTTTGGAGCACATTGT
+>HWI-EAS91_1_306UPAAXX:6:1:717:1569
+TCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGT
+>HWI-EAS91_1_306UPAAXX:6:1:610:765
+TTCAGCGCCTTCCATGATGAGACAGGCCGTTTGAAT
+>HWI-EAS91_1_306UPAAXX:6:1:663:380
+TAAACATTCTGTGCCGCGTTTCTTTGTTCCTTATCT
+>HWI-EAS91_1_306UPAAXX:6:1:790:1358
+TTATCACCTTATTGAAGGCTTATCATTCATTTAGGT
+>HWI-EAS91_1_306UPAAXX:6:1:965:1633
+TAGATGTGGTAGAAGTCGTCATTTGGCGAGAAAGCT
+>HWI-EAS91_1_306UPAAXX:6:1:673:319
+TTCTTGCAAATCACCAGAAGGCGGTTCCTGAATGAT
+>HWI-EAS91_1_306UPAAXX:6:1:684:371
+TAGCGGTAAAGTTAGACCAAACCATGAAACCAACAT
+>HWI-EAS91_1_306UPAAXX:6:1:1147:1444
+ATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGC
+>HWI-EAS91_1_306UPAAXX:6:1:983:678
+ATACCTGGTCTTTCGTATTCTGGCGTGAAGTCGCCG
+>HWI-EAS91_1_306UPAAXX:6:1:1608:1119
+TCACGCGGCGGCAAGTTGCCATACAAAACAGGGTCG
+>HWI-EAS91_1_306UPAAXX:6:1:1048:1193
+TAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAT
+>HWI-EAS91_1_306UPAAXX:6:1:1265:1429
+ATATTTTTCATGGTATTGATAAAGCTGTTGCCGATT
+>HWI-EAS91_1_306UPAAXX:6:1:1607:1677
+TGTTGCTTGGAAAGATTGGTGTTTTCCATAATAGAC
+>HWI-EAS91_1_306UPAAXX:6:1:1087:1421
+ACGAACGTCAGAAGCAGCCTTATGGCCGTCAACATC
+>HWI-EAS91_1_306UPAAXX:6:1:324:490
+GCACCAAACATAAATCACCTCACTTAAGTGGCTGGG
+>HWI-EAS91_1_306UPAAXX:6:1:1596:614
+TTACCGCTACTAAATGCCGCGGATTGGTTTCGCTGT
+>HWI-EAS91_1_306UPAAXX:6:1:343:83
+GTTACGCAGTTTTGCCGCAAGCTGGCTGCTGTACGC
+>HWI-EAS91_1_306UPAAXX:6:1:203:667
+GCATGAATGTGCTTAATAGAGGCCAAGGCGGTCTAG
+>HWI-EAS91_1_306UPAAXX:6:1:34:480
+GGCAAGTTGCCATACAAAACAGGGTCGCCAGCAATT
+>HWI-EAS91_1_306UPAAXX:6:1:606:1743
+TAGCGACAGCTTGGTTTTTAGTGAGTTGTTCCATTC
+>HWI-EAS91_1_306UPAAXX:6:1:254:1391
+TATAATTACCCCAAAAAGAAAGGTATTAAGGATGAG
+>HWI-EAS91_1_306UPAAXX:6:1:1568:1750
+TAACCAGTAGTGTTAACAGTCGGGAGAGGAGTGGCT
+>HWI-EAS91_1_306UPAAXX:6:1:1538:869
+TACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCA
+>HWI-EAS91_1_306UPAAXX:6:1:255:38
+GTCAGGATTGACACCCTCCCAATTGTATGTTTTCAT
+>HWI-EAS91_1_306UPAAXX:6:1:1543:1555
+TAAAACGCCTCTAATCGGTCGTCAGCCAACGTGAGG
+>HWI-EAS91_1_306UPAAXX:6:1:1365:733
+AGAATCAGCGGTATGGCTCTTCTCCTTTTTTCGCTT
+>HWI-EAS91_1_306UPAAXX:6:1:1604:943
+TACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCT
+>HWI-EAS91_1_306UPAAXX:6:1:1574:1632
+TCAGTATGCAAATTAGCATAAGCAGCTTGCAGACCC
+>HWI-EAS91_1_306UPAAXX:6:1:565:1799
+TCTTGGTCAGTATGCAAATTAGCATAAGCAGCTTGC
+>HWI-EAS91_1_306UPAAXX:6:1:1004:380
+TATTGACTCTACTGTAGACATTTTTACTTTTTATTT
+>HWI-EAS91_1_306UPAAXX:6:1:1345:965
+ATTCAAAGGATAAACATCATAGGCAGTCGGGAGGGT
+>HWI-EAS91_1_306UPAAXX:6:1:1704:756
+TGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG
+>HWI-EAS91_1_306UPAAXX:6:1:310:1346
+TATAACGTTGACGATGTAGCTTTAGTTTTCTTTAAA
+>HWI-EAS91_1_306UPAAXX:6:1:900:1858
+TTTACCGCTTCGGCGTTATAACCTCACACTCAATCT
+>HWI-EAS91_1_306UPAAXX:6:1:1250:1741
+TAAATCCAAAACGGCAGAAGCCTGAATGAGCTTAAT
+>HWI-EAS91_1_306UPAAXX:6:1:1170:1317
+TCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTC
+>HWI-EAS91_1_306UPAAXX:6:1:149:1896
+GCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATC
+>HWI-EAS91_1_306UPAAXX:6:1:1504:494
+TGTCTACAGTAGAGTCAATAGCAAGGCCACGACGCC
+>HWI-EAS91_1_306UPAAXX:6:1:395:256
+GTCCATATCTGACTTTTTGTTAACGTATTTATCCAC
+>HWI-EAS91_1_306UPAAXX:6:1:1110:1109
+ACCGCTTCGGCGTTATAACCTCACACTCAATCTTTT
+>HWI-EAS91_1_306UPAAXX:6:1:895:649
+TTCTGCACGTAATTTTTGACGCACGTTTTCTTCTGC
+>HWI-EAS91_1_306UPAAXX:6:1:827:1378
+TGCAAGCTGCTTATGCTAATTTGCATACTGACCAAG
+>HWI-EAS91_1_306UPAAXX:6:1:1051:1587
+TTTGACACTCTCACGTTGGCTGACGACCGATTAGAG
+>HWI-EAS91_1_306UPAAXX:6:1:1656:1549
+AACCTGCTGTTGCTTGGAAAGATTGGTGTTTTCCAT
+>HWI-EAS91_1_306UPAAXX:6:1:366:150
+GGTCAGTAGCAATCCAAACTTTGTTACTCGTCAGAA
+>HWI-EAS91_1_306UPAAXX:6:1:955:1792
+ATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTA
+>HWI-EAS91_1_306UPAAXX:6:1:1340:1403
+ATAAAATGCACCGCATGGAAATGAAGACGGCCATTA
+>HWI-EAS91_1_306UPAAXX:6:1:1693:1017
+TGAGTTTGTATCTGTTACTGAGAAGTTAATGGATGT
+>HWI-EAS91_1_306UPAAXX:6:1:1099:1572
+AATTTTTACCGCTTCGGCGTTATAACCTCACACTCA
+>HWI-EAS91_1_306UPAAXX:6:1:218:1148
+TATGCAAATTAGCATAAGCAGCTTGCAGACCCATAT
+>HWI-EAS91_1_306UPAAXX:6:1:403:614
+TGGTGCTGATGCTTCCTCTGCTGGTATGGTTTACGC
+>HWI-EAS91_1_306UPAAXX:6:1:1651:646
+TCAAGCTCTTGGAAGAGATTCTGTCTTTTCGTATGC
+>HWI-EAS91_1_306UPAAXX:6:1:1566:499
+TGCGGTGCATTTTATGCGGACACTTCCTACAGGTAG
+>HWI-EAS91_1_306UPAAXX:6:1:825:951
+ACAGGCCGTTTGAATGTTTACGGGGTGTACATAATA
+>HWI-EAS91_1_306UPAAXX:6:1:1745:1865
+TTAACTTCTGCGTCATGGAAGCGATAAAACTCTGCG
+>HWI-EAS91_1_306UPAAXX:6:1:973:1992
+TAGTAATTCCTGCTTTATCAAGATAATTTTTCGACT
+>HWI-EAS91_1_306UPAAXX:6:1:171:1653
+TAATAATGTTTTCCGTAAATTCAGCGCCTTCCATGT
+>HWI-EAS91_1_306UPAAXX:6:1:397:363
+TGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGT
+>HWI-EAS91_1_306UPAAXX:6:1:1336:1155
+ATATGTATGTTGACGGCCATAAGGCTGCTTCTGACG
+>HWI-EAS91_1_306UPAAXX:6:1:685:629
+AGTATGCAAATTAGCATAAGCAGCTTGCAGACCCAT
+>HWI-EAS91_1_306UPAAXX:6:1:1409:510
+ACATAATAAGCAATGACGGCAGCAATAAACTCAACA
+>HWI-EAS91_1_306UPAAXX:6:1:1631:998
+AACCATCAGCATGAGCCTGTCGCATTGCATTCATCC
+>HWI-EAS91_1_306UPAAXX:6:1:260:1698
+TTATTATGTTCATCCCGTCAACATTCAAACTGCCTT
+>HWI-EAS91_1_306UPAAXX:6:1:578:971
+TTAACGCTACTAAATTCCGCGGATTGGTTTCGTTGT
+>HWI-EAS91_1_306UPAAXX:6:1:1613:642
+ATAGAAATTTCACGCGGCGGCAAGTTGCCATACAAA
+>HWI-EAS91_1_306UPAAXX:6:1:237:650
+GACGGTATAATAACCACCATCATGGCGACCATTCAA
+>HWI-EAS91_1_306UPAAXX:6:1:1100:1875
+TTATGGTTCGTTCTTATTACCCTTCTGAATGTCACG
+>HWI-EAS91_1_306UPAAXX:6:1:352:32
+GTACCATAAACGCAAGCCTCAACGCAGCGACGAGCC
+>HWI-EAS91_1_306UPAAXX:6:1:443:229
+GCAGTAGGCGGAAAACGAACAAGCGCAAGAGTAAAC
+>HWI-EAS91_1_306UPAAXX:6:1:1131:731
+AGCAGTCGGCGTGTGAATCATTAGCCTTGCGACCCT
+>HWI-EAS91_1_306UPAAXX:6:1:133:1089
+AAGGTTAGTGCTGAGGTTGACTTAGTTCATCATCAA
+>HWI-EAS91_1_306UPAAXX:6:1:65:1307
+TGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTT
+>HWI-EAS91_1_306UPAAXX:6:1:905:1493
+TCAGCTTTACCGTCTTTCCAGAAATTGTTCCAAGTT
+>HWI-EAS91_1_306UPAAXX:6:1:733:540
+TGCCGCGGATTGGTTTCGCTGAATCAGGTTATTAAT
+>HWI-EAS91_1_306UPAAXX:6:1:161:1707
+TAATGTCGTCACTGATGCTGCTTCTGTTGTTGTTTT
+>HWI-EAS91_1_306UPAAXX:6:1:380:1861
+TCTGGGCATCTGGCTATGATGTTGATGGAACTGACC
+>HWI-EAS91_1_306UPAAXX:6:1:1761:566
+TATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCAT
+>HWI-EAS91_1_306UPAAXX:6:1:1486:651
+TGGCGGTATTTCTTCTTCTCTTTCTTGTTGCGCCCT
+>HWI-EAS91_1_306UPAAXX:6:1:508:1380
+TCCATCAACATCATAGCCAGATGCCCAGAGATTAGA
+>HWI-EAS91_1_306UPAAXX:6:1:1763:855
+TGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTC
+>HWI-EAS91_1_306UPAAXX:6:1:1553:553
+TAATTGCAGGGGCTTCGGCCCCTTACTTGAGGATAA
+>HWI-EAS91_1_306UPAAXX:6:1:1424:507
+TCCACTGCAACAACTGAACGGACTGGAAACACTGGT
+>HWI-EAS91_1_306UPAAXX:6:1:988:135
+TAAGCTGGTTCTCACTTCTGTTACTCCAGCTTCTTC
+>HWI-EAS91_1_306UPAAXX:6:1:810:1918
+TTTTCATCCCGAAGTTGCGGCTCATTCTGATTCTGT
+>HWI-EAS91_1_306UPAAXX:6:1:588:559
+TCTGGTTGAACGGCGTCGCGTCGTAACCCAGCTTGG
+>HWI-EAS91_1_306UPAAXX:6:1:1264:1214
+ATCAGGTTATTAAAGAGATTATTTGTCTCCAGCCAC
+>HWI-EAS91_1_306UPAAXX:6:1:1000:1475
+TCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTG
+>HWI-EAS91_1_306UPAAXX:6:1:1389:160
+TTATTCGCCACCATGATTATGACCAGTGTTTCCAGT
+>HWI-EAS91_1_306UPAAXX:6:1:422:1296
+TTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGT
+>HWI-EAS91_1_306UPAAXX:6:1:1273:856
+TAGCCATAGCACCAGAAACAAAACTAGGGGCGGCCT
+>HWI-EAS91_1_306UPAAXX:6:1:450:969
+TGTTTTCCATAATAGACGCAACGCGAGCAGTAGACT
+>HWI-EAS91_1_306UPAAXX:6:1:1202:828
+ATCGTCAACGTTATATTTTGATAGTTTGACGTTTAT
+>HWI-EAS91_1_306UPAAXX:6:1:1721:1800
+GGGTTAGGGACATTAGAGCCTTGACTGACTGAGTTT
+>HWI-EAS91_1_306UPAAXX:6:1:228:2019
+TTGAGTAAGCATTTGGCGCATAATCTCGGAAACCTG
+>HWI-EAS91_1_306UPAAXX:6:1:1579:1214
+ACGTTTGGTCAGTTCCATCAACATCATAGCCAGATG
+>HWI-EAS91_1_306UPAAXX:6:1:429:1055
+TTTTGCCTGTTTGGTTCGCTTTGAGTCTTCTTCTTT
+>HWI-EAS91_1_306UPAAXX:6:1:1359:1689
+AAGAGCAGAAGCAATACCGCCAGCAATAGCACCAAA
+>HWI-EAS91_1_306UPAAXX:6:1:1474:1056
+TCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGAC
+>HWI-EAS91_1_306UPAAXX:6:1:105:1818
+TTGGGGATTGAGAAAGAGTAGAAATGCCACAAGCCT
+>HWI-EAS91_1_306UPAAXX:6:1:208:1538
+TAAAATGCAACTGGACAATCAGAAAGAGATTGCCGA
+>HWI-EAS91_1_306UPAAXX:6:1:1361:1623
+AATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTA
+>HWI-EAS91_1_306UPAAXX:6:1:595:1670
+TGAATCTCTTTAGTCGCAGTAGGCGGAAAACGAACA
+>HWI-EAS91_1_306UPAAXX:6:1:6:1885
+TCTAATGTCGTCACTGATGCTGCTTCTGGTGTGTTT
+>HWI-EAS91_1_306UPAAXX:6:1:706:1085
+TGGTTCGTTCTTATTACCCTTCTGAATGTCACGCTG
+>HWI-EAS91_1_306UPAAXX:6:1:1307:825
+AGCGGTAAAGTTAGACCAAACCATGAAACCAACATA
+>HWI-EAS91_1_306UPAAXX:6:1:762:802
+TGGCATTAACACCATCCTTCATGAACTTAATCCACT
+>HWI-EAS91_1_306UPAAXX:6:1:1657:506
+TTGCGACCCTCGGCAGCAAGAACCATACGACCAATT
+>HWI-EAS91_1_306UPAAXX:6:1:184:811
+TTCTGATAAGCTGGTTCTCACTTCTGTTACTCCAGC
+>HWI-EAS91_1_306UPAAXX:6:1:1469:1718
+TGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTT
+>HWI-EAS91_1_306UPAAXX:6:1:815:1640
+TGGCGGCGATTGCGTACCCGACGACCCAAATTAGGG
+>HWI-EAS91_1_306UPAAXX:6:1:1580:1388
+AAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTG
+>HWI-EAS91_1_306UPAAXX:6:1:1617:1554
+TACGGGGAAGGACGTCAATAGTCACACAGTCCTTGA
+>HWI-EAS91_1_306UPAAXX:6:1:1544:431
+TGATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTTA
+>HWI-EAS91_1_306UPAAXX:6:1:1604:1541
+TCAGTGACGACATTAGAAATATCCTTTGCAGTAGCG
+>HWI-EAS91_1_306UPAAXX:6:1:1485:741
+ATCAAACGCTGAATAGTAAAGCCTCTACGCGATTTC
+>HWI-EAS91_1_306UPAAXX:6:1:1226:393
+TGCCACAAGCCTCAATAGCAGGTTTAAGAGCCTCGA
+>HWI-EAS91_1_306UPAAXX:6:1:1506:973
+ATTAGGGTCAACGCTACCTGTAGGAAGTGTCCGCAT
+>HWI-EAS91_1_306UPAAXX:6:1:890:1838
+TGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGC
+>HWI-EAS91_1_306UPAAXX:6:1:453:1527
+TAAGAGGGCGTTCAGCAGCCAGCTTGCGGCAAAACT
+>HWI-EAS91_1_306UPAAXX:6:1:1056:570
+ACATTGTAGCATTGTGCCAATTCATCCATTAACTTC
+>HWI-EAS91_1_306UPAAXX:6:1:1736:74
+TATCCGAAAGTGTTAACTTCTGCGTCATGGAAGCGT
+>HWI-EAS91_1_306UPAAXX:6:1:169:1896
+GTATGCAAATTAGCATAAGCAGCTTGCAGACCCATA
+>HWI-EAS91_1_306UPAAXX:6:1:259:949
+TGAGGATAAATTATGTCTAATATTCAAACTTGCTCC
+>HWI-EAS91_1_306UPAAXX:6:1:1205:893
+ATTTCTGGAAAGACGGTAAAGCTGATGGTATTGGCT
+>HWI-EAS91_1_306UPAAXX:6:1:732:1335
+TACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCT
+>HWI-EAS91_1_306UPAAXX:6:1:667:664
+TCTGAGTCCGATGCTGTTCAACCACTAATAGGTAAG
+>HWI-EAS91_1_306UPAAXX:6:1:535:587
+TTAGAGGCGTTTTATGATAATCCCAATGCTTTGCGT
+>HWI-EAS91_1_306UPAAXX:6:1:412:446
+GTGTGGTTGATATTTTTCATGGTATTGATAAAGCTT
+>HWI-EAS91_1_306UPAAXX:6:1:507:1599
+TTGCTGGCGGTTTTTCTTTTTTTTTTTTTTTTTTTT
+>HWI-EAS91_1_306UPAAXX:6:1:575:1818
+TAAAATGCACCGCATGGAAATGAAGACGGCCATTAG
+>HWI-EAS91_1_306UPAAXX:6:1:1568:1428
+ACCAGTTATATGGCTGGTTGTTTTTTTTTTTTTTTT
+>HWI-EAS91_1_306UPAAXX:6:1:1417:982
+AACAAGAGAATCTCTACCATGAACAAAATGTGACTC
+>HWI-EAS91_1_306UPAAXX:6:1:280:1340
+GGCCAAACCAGTGGCGATGGCCGCGCTGGAGGTTTT
+>HWI-EAS91_1_306UPAAXX:6:1:966:144
+TACTAAATGCCGCGGATTGGTTTCGCTGAATCAGGT
+>HWI-EAS91_1_306UPAAXX:6:1:1391:1987
+TAATAATGTTTTCCGTAAATTCAGCGCCTTCCATGT
+>HWI-EAS91_1_306UPAAXX:6:1:1280:278
+ATGGAAATGAAGACGGCCATTAGCTGTACCATACTC
+>HWI-EAS91_1_306UPAAXX:6:1:631:858
+TGATATTGGTCGTATGGTTCTTGCTTCCGTGGGTCT
+>HWI-EAS91_1_306UPAAXX:6:1:518:573
+TTAGGTGTCTGTAAAACAGGTGCCGAAGAAGCTGGT
+>HWI-EAS91_1_306UPAAXX:6:1:54:981
+TTGACATTTTAAAAGAGCGTGGATTACTATCTGATT
+>HWI-EAS91_1_306UPAAXX:6:1:218:1165
+TATTGACTCTACTGTAGACATTTTTACTTTTTATTT
+>HWI-EAS91_1_306UPAAXX:6:1:1727:1530
+TCAACGCAGCGACGAGCACGAGAGCGGTCAGTAGCA
+>HWI-EAS91_1_306UPAAXX:6:1:519:657
+TGAACAGCATCGGACTCAGATAGTAATCCACGCTCT
+>HWI-EAS91_1_306UPAAXX:6:1:939:967
+ATACCGTCAAGGACTGTGTGACTATTGACGTCCTTC
+>HWI-EAS91_1_306UPAAXX:6:1:299:1060
+TATAACTGGTAGCTTTAAGCGGCTCACCTTTAGCAT
+>HWI-EAS91_1_306UPAAXX:6:1:438:665
+TAATTCGTAAACAAGCAGTAGTAATTCCTGCTTTAT
+>HWI-EAS91_1_306UPAAXX:6:1:1303:1971
+AGCATTGTGCCAATTCATCCATTAACTTCTCAGTAA
+>HWI-EAS91_1_306UPAAXX:6:1:214:1264
+TCAGCACCAACAGAAACAACCTGATTAGCGGCGTTG
+>HWI-EAS91_1_306UPAAXX:6:1:1454:1423
+AACGGAAAACATCCTTCATAGAAATTTCACGCGGCG
+>HWI-EAS91_1_306UPAAXX:6:1:1633:340
+TTCCATAATAGACGCAACGCGAGCAGTAGACTCCTT
+>HWI-EAS91_1_306UPAAXX:6:1:671:1196
+ATACGAAAAGACAGAATCTCTTCCAAGAGCTTGATG
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/lastz_census.txt	Mon Nov 26 09:47:51 2012 -0500
@@ -0,0 +1,5386 @@
+phiX	1	255
+phiX	2	255
+phiX	3	255
+phiX	4	255
+phiX	5	255
+phiX	6	255
+phiX	7	255
+phiX	8	255
+phiX	9	255
+phiX	10	255
+phiX	11	255
+phiX	12	255
+phiX	13	255
+phiX	14	255
+phiX	15	255
+phiX	16	255
+phiX	17	255
+phiX	18	255
+phiX	19	255
+phiX	20	255
+phiX	21	255
+phiX	22	255
+phiX	23	255
+phiX	24	255
+phiX	25	255
+phiX	26	255
+phiX	27	255
+phiX	28	255
+phiX	29	255
+phiX	30	255
+phiX	31	255
+phiX	32	255
+phiX	33	255
+phiX	34	255
+phiX	35	255
+phiX	36	255
+phiX	37	255
+phiX	38	255
+phiX	39	255
+phiX	40	255
+phiX	41	255
+phiX	42	255
+phiX	43	255
+phiX	44	255
+phiX	45	255
+phiX	46	255
+phiX	47	255
+phiX	48	255
+phiX	49	255
+phiX	50	255
+phiX	51	255
+phiX	52	255
+phiX	53	255
+phiX	54	255
+phiX	55	255
+phiX	56	255
+phiX	57	255
+phiX	58	255
+phiX	59	255
+phiX	60	255
+phiX	61	255
+phiX	62	255
+phiX	63	255
+phiX	64	255
+phiX	65	255
+phiX	66	255
+phiX	67	255
+phiX	68	255
+phiX	69	255
+phiX	70	255
+phiX	71	255
+phiX	72	255
+phiX	73	255
+phiX	74	255
+phiX	75	255
+phiX	76	255
+phiX	77	255
+phiX	78	255
+phiX	79	255
+phiX	80	255
+phiX	81	255
+phiX	82	255
+phiX	83	255
+phiX	84	255
+phiX	85	255
+phiX	86	255
+phiX	87	255
+phiX	88	255
+phiX	89	255
+phiX	90	255
+phiX	91	255
+phiX	92	255
+phiX	93	255
+phiX	94	255
+phiX	95	255
+phiX	96	255
+phiX	97	255
+phiX	98	255
+phiX	99	255
+phiX	100	255
+phiX	101	255
+phiX	102	255
+phiX	103	255
+phiX	104	255
+phiX	105	255
+phiX	106	255
+phiX	107	255
+phiX	108	255
+phiX	109	255
+phiX	110	255
+phiX	111	255
+phiX	112	255
+phiX	113	255
+phiX	114	255
+phiX	115	255
+phiX	116	255
+phiX	117	255
+phiX	118	255
+phiX	119	255
+phiX	120	255
+phiX	121	255
+phiX	122	255
+phiX	123	255
+phiX	124	255
+phiX	125	255
+phiX	126	255
+phiX	127	255
+phiX	128	255
+phiX	129	255
+phiX	130	255
+phiX	131	255
+phiX	132	255
+phiX	133	255
+phiX	134	255
+phiX	135	255
+phiX	136	255
+phiX	137	255
+phiX	138	255
+phiX	139	255
+phiX	140	255
+phiX	141	255
+phiX	142	255
+phiX	143	255
+phiX	144	255
+phiX	145	255
+phiX	146	255
+phiX	147	255
+phiX	148	255
+phiX	149	255
+phiX	150	255
+phiX	151	255
+phiX	152	255
+phiX	153	255
+phiX	154	255
+phiX	155	255
+phiX	156	255
+phiX	157	255
+phiX	158	255
+phiX	159	255
+phiX	160	255
+phiX	161	255
+phiX	162	255
+phiX	163	255
+phiX	164	255
+phiX	165	255
+phiX	166	255
+phiX	167	255
+phiX	168	255
+phiX	169	255
+phiX	170	255
+phiX	171	255
+phiX	172	255
+phiX	173	255
+phiX	174	255
+phiX	175	255
+phiX	176	255
+phiX	177	255
+phiX	178	255
+phiX	179	255
+phiX	180	255
+phiX	181	255
+phiX	182	255
+phiX	183	255
+phiX	184	255
+phiX	185	255
+phiX	186	255
+phiX	187	255
+phiX	188	255
+phiX	189	255
+phiX	190	255
+phiX	191	255
+phiX	192	255
+phiX	193	255
+phiX	194	255
+phiX	195	255
+phiX	196	255
+phiX	197	255
+phiX	198	255
+phiX	199	255
+phiX	200	255
+phiX	201	255
+phiX	202	255
+phiX	203	255
+phiX	204	255
+phiX	205	255
+phiX	206	255
+phiX	207	255
+phiX	208	255
+phiX	209	255
+phiX	210	255
+phiX	211	255
+phiX	212	255
+phiX	213	255
+phiX	214	255
+phiX	215	255
+phiX	216	255
+phiX	217	255
+phiX	218	255
+phiX	219	255
+phiX	220	255
+phiX	221	255
+phiX	222	255
+phiX	223	255
+phiX	224	255
+phiX	225	255
+phiX	226	255
+phiX	227	255
+phiX	228	255
+phiX	229	255
+phiX	230	255
+phiX	231	255
+phiX	232	255
+phiX	233	255
+phiX	234	255
+phiX	235	255
+phiX	236	255
+phiX	237	255
+phiX	238	255
+phiX	239	255
+phiX	240	255
+phiX	241	255
+phiX	242	255
+phiX	243	255
+phiX	244	255
+phiX	245	255
+phiX	246	255
+phiX	247	255
+phiX	248	255
+phiX	249	255
+phiX	250	255
+phiX	251	255
+phiX	252	255
+phiX	253	255
+phiX	254	255
+phiX	255	255
+phiX	256	255
+phiX	257	255
+phiX	258	255
+phiX	259	255
+phiX	260	255
+phiX	261	255
+phiX	262	255
+phiX	263	255
+phiX	264	255
+phiX	265	255
+phiX	266	255
+phiX	267	255
+phiX	268	255
+phiX	269	255
+phiX	270	255
+phiX	271	255
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+phiX	5248	255
+phiX	5249	255
+phiX	5250	255
+phiX	5251	255
+phiX	5252	255
+phiX	5253	255
+phiX	5254	255
+phiX	5255	255
+phiX	5256	255
+phiX	5257	255
+phiX	5258	255
+phiX	5259	255
+phiX	5260	255
+phiX	5261	255
+phiX	5262	255
+phiX	5263	255
+phiX	5264	255
+phiX	5265	255
+phiX	5266	255
+phiX	5267	255
+phiX	5268	255
+phiX	5269	255
+phiX	5270	255
+phiX	5271	255
+phiX	5272	255
+phiX	5273	255
+phiX	5274	255
+phiX	5275	255
+phiX	5276	255
+phiX	5277	255
+phiX	5278	255
+phiX	5279	255
+phiX	5280	255
+phiX	5281	255
+phiX	5282	255
+phiX	5283	255
+phiX	5284	255
+phiX	5285	255
+phiX	5286	255
+phiX	5287	255
+phiX	5288	255
+phiX	5289	255
+phiX	5290	255
+phiX	5291	255
+phiX	5292	255
+phiX	5293	255
+phiX	5294	255
+phiX	5295	255
+phiX	5296	255
+phiX	5297	255
+phiX	5298	255
+phiX	5299	255
+phiX	5300	255
+phiX	5301	255
+phiX	5302	255
+phiX	5303	255
+phiX	5304	255
+phiX	5305	255
+phiX	5306	255
+phiX	5307	255
+phiX	5308	255
+phiX	5309	255
+phiX	5310	255
+phiX	5311	255
+phiX	5312	255
+phiX	5313	255
+phiX	5314	255
+phiX	5315	255
+phiX	5316	255
+phiX	5317	255
+phiX	5318	255
+phiX	5319	255
+phiX	5320	255
+phiX	5321	255
+phiX	5322	255
+phiX	5323	255
+phiX	5324	255
+phiX	5325	255
+phiX	5326	255
+phiX	5327	255
+phiX	5328	255
+phiX	5329	255
+phiX	5330	255
+phiX	5331	255
+phiX	5332	255
+phiX	5333	255
+phiX	5334	255
+phiX	5335	255
+phiX	5336	255
+phiX	5337	255
+phiX	5338	255
+phiX	5339	255
+phiX	5340	255
+phiX	5341	255
+phiX	5342	255
+phiX	5343	255
+phiX	5344	255
+phiX	5345	255
+phiX	5346	255
+phiX	5347	255
+phiX	5348	255
+phiX	5349	255
+phiX	5350	255
+phiX	5351	255
+phiX	5352	255
+phiX	5353	255
+phiX	5354	255
+phiX	5355	255
+phiX	5356	255
+phiX	5357	255
+phiX	5358	255
+phiX	5359	255
+phiX	5360	255
+phiX	5361	255
+phiX	5362	255
+phiX	5363	255
+phiX	5364	255
+phiX	5365	255
+phiX	5366	255
+phiX	5367	255
+phiX	5368	255
+phiX	5369	255
+phiX	5370	255
+phiX	5371	255
+phiX	5372	255
+phiX	5373	255
+phiX	5374	255
+phiX	5375	255
+phiX	5376	255
+phiX	5377	255
+phiX	5378	255
+phiX	5379	255
+phiX	5380	255
+phiX	5381	255
+phiX	5382	255
+phiX	5383	255
+phiX	5384	255
+phiX	5385	255
+phiX	5386	255
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/lastz_diffs.txt	Mon Nov 26 09:47:51 2012 -0500
@@ -0,0 +1,19 @@
+phiX	2490	2491	+	5386	HWI-EAS91_1_306UPAAXX:6:1:486:822	10	11	-	36	C	A	ACCTGTTTTACAGACACCTAAAGCTACATCGTCAAC	ACCTGTTTTAAAGACACCTAAAGCTACATCGTCAAC
+phiX	2173	2174	+	5386	HWI-EAS91_1_306UPAAXX:6:1:259:1389	26	27	+	36	G	T	GCGTACTTATTCGCCACCATGATTATGACCAGTGTT	GCGTACTTATTCGCCACCATGATTATTACCAGTGTT
+phiX	578	579	+	5386	HWI-EAS91_1_306UPAAXX:6:1:317:1411	8	9	+	36	G	T	GTACGCTGGACTTTGTGGGATACCCTCGCTTTCCT	GTACGCTGTACTTTGTGGGATACCCTCGCTTTCCT
+phiX	2992	2993	+	5386	HWI-EAS91_1_306UPAAXX:6:1:458:1629	23	24	+	36	G	T	GCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGT	GCTGGTGGCGCCATGTCTAAATTTTTTGGAGGCGGT
+phiX	4783	4784	+	5386	HWI-EAS91_1_306UPAAXX:6:1:646:59	18	19	-	36	C	T	CATTTCCATGCGGTGCACTTTATGCGGACACTTCC	CATTTCCATGCGGTGCATTTTATGCGGACACTTCC
+phiX	1649	1650	+	5386	HWI-EAS91_1_306UPAAXX:6:1:295:694	24	25	+	36	A	G	GTGATTACTTCATGCAGCGTTACCATGATGTTATTT	GTGATTACTTCATGCAGCGTTACCGTGATGTTATTT
+phiX	1995	1996	+	5386	HWI-EAS91_1_306UPAAXX:6:1:590:331	14	15	+	36	G	T	GAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGAT	GAAATTTCTATGAATGATGTTTTCCGTTCTGGTGAT
+phiX	3261	3262	+	5386	HWI-EAS91_1_306UPAAXX:6:1:221:1238	17	18	-	36	C	A	AAGTCTGCCGCTGATAAAGGAAAGGATAC	AAGTCTGCCGATGATAAAGGAAAGGATAC
+phiX	4109	4110	+	5386	HWI-EAS91_1_306UPAAXX:6:1:478:252	12	13	-	36	C	A	ATGCTTGGCTTCCATAAGCAGATGGATAACCGCATC	ATGCTTGGCTTCAATAAGCAGATGGATAACCGCATC
+phiX	2972	2973	+	5386	HWI-EAS91_1_306UPAAXX:6:1:836:1204	17	18	+	36	G	T	TTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAAT	TTGCTTCTGCTCTTGCTTGTGGCGCCATGTCTAAAT
+phiX	2234	2235	+	5386	HWI-EAS91_1_306UPAAXX:6:1:172:1412	13	14	-	36	C	A	AAATTTAATGTGACCGTTTATCGCAATCTGCCGACC	AAATTTAATGTGAACGTTTATCGCAATCTGCCGACC
+phiX	2902	2903	+	5386	HWI-EAS91_1_306UPAAXX:6:1:540:1415	18	19	+	36	G	T	TTATTAAAGAGATTATTTGTCTCCAGCCACTTA	TTATTAAAGAGATTATTTTTCTCCAGCCACTTA
+phiX	2837	2838	+	5386	HWI-EAS91_1_306UPAAXX:6:1:253:1162	14	15	-	36	T	A	ATGGTTTGGTCTAACTTTACCGCTACTAAATGC	ATGGTTTGGTCAAACTTTACCGCTACTAAATGC
+phiX	4662	4663	+	5386	HWI-EAS91_1_306UPAAXX:6:1:828:754	26	27	+	36	G	T	TTTGCGTGACTATTTTCGTGATATTGGTCGTATGGT	TTTGCGTGACTATTTTCGTGATATTGTTCGTATGGT
+phiX	4783	4784	+	5386	HWI-EAS91_1_306UPAAXX:6:1:1566:499	9	10	+	36	C	T	TGCGGTGCACTTTATGCGGACACTTCCTACAGGTAG	TGCGGTGCATTTTATGCGGACACTTCCTACAGGTAG
+phiX	2857	2858	+	5386	HWI-EAS91_1_306UPAAXX:6:1:578:971	15	16	+	36	G	T	CGCTACTAAATGCCGCGGATTGGTTTCG	CGCTACTAAATTCCGCGGATTGGTTTCG
+phiX	3112	3113	+	5386	HWI-EAS91_1_306UPAAXX:6:1:1721:1800	27	28	-	36	T	C	TCAAGGCTCTAATGTTCCTAACCC	TCAAGGCTCTAATGTCCCTAACCC
+phiX	4825	4826	+	5386	HWI-EAS91_1_306UPAAXX:6:1:815:1640	9	10	-	36	T	G	CCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCA	CCCTAATTTGGGTCGTCGGGTACGCAATCGCCGCCA
+phiX	4517	4518	+	5386	HWI-EAS91_1_306UPAAXX:6:1:1485:741	19	20	-	36	G	A	GAAATCGCGTAGAGGCTTTGCTATTCAGCGTTTGAT	GAAATCGCGTAGAGGCTTTACTATTCAGCGTTTGAT
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/lastz_diffs_ref_name.txt	Mon Nov 26 09:47:51 2012 -0500
@@ -0,0 +1,19 @@
+Ref	2490	2491	+	5386	HWI-EAS91_1_306UPAAXX:6:1:486:822	10	11	-	36	C	A	ACCTGTTTTACAGACACCTAAAGCTACATCGTCAAC	ACCTGTTTTAAAGACACCTAAAGCTACATCGTCAAC
+Ref	2173	2174	+	5386	HWI-EAS91_1_306UPAAXX:6:1:259:1389	26	27	+	36	G	T	GCGTACTTATTCGCCACCATGATTATGACCAGTGTT	GCGTACTTATTCGCCACCATGATTATTACCAGTGTT
+Ref	578	579	+	5386	HWI-EAS91_1_306UPAAXX:6:1:317:1411	8	9	+	36	G	T	GTACGCTGGACTTTGTGGGATACCCTCGCTTTCCT	GTACGCTGTACTTTGTGGGATACCCTCGCTTTCCT
+Ref	2992	2993	+	5386	HWI-EAS91_1_306UPAAXX:6:1:458:1629	23	24	+	36	G	T	GCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGT	GCTGGTGGCGCCATGTCTAAATTTTTTGGAGGCGGT
+Ref	4783	4784	+	5386	HWI-EAS91_1_306UPAAXX:6:1:646:59	18	19	-	36	C	T	CATTTCCATGCGGTGCACTTTATGCGGACACTTCC	CATTTCCATGCGGTGCATTTTATGCGGACACTTCC
+Ref	1649	1650	+	5386	HWI-EAS91_1_306UPAAXX:6:1:295:694	24	25	+	36	A	G	GTGATTACTTCATGCAGCGTTACCATGATGTTATTT	GTGATTACTTCATGCAGCGTTACCGTGATGTTATTT
+Ref	1995	1996	+	5386	HWI-EAS91_1_306UPAAXX:6:1:590:331	14	15	+	36	G	T	GAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGAT	GAAATTTCTATGAATGATGTTTTCCGTTCTGGTGAT
+Ref	3261	3262	+	5386	HWI-EAS91_1_306UPAAXX:6:1:221:1238	17	18	-	36	C	A	AAGTCTGCCGCTGATAAAGGAAAGGATAC	AAGTCTGCCGATGATAAAGGAAAGGATAC
+Ref	4109	4110	+	5386	HWI-EAS91_1_306UPAAXX:6:1:478:252	12	13	-	36	C	A	ATGCTTGGCTTCCATAAGCAGATGGATAACCGCATC	ATGCTTGGCTTCAATAAGCAGATGGATAACCGCATC
+Ref	2972	2973	+	5386	HWI-EAS91_1_306UPAAXX:6:1:836:1204	17	18	+	36	G	T	TTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAAT	TTGCTTCTGCTCTTGCTTGTGGCGCCATGTCTAAAT
+Ref	2234	2235	+	5386	HWI-EAS91_1_306UPAAXX:6:1:172:1412	13	14	-	36	C	A	AAATTTAATGTGACCGTTTATCGCAATCTGCCGACC	AAATTTAATGTGAACGTTTATCGCAATCTGCCGACC
+Ref	2902	2903	+	5386	HWI-EAS91_1_306UPAAXX:6:1:540:1415	18	19	+	36	G	T	TTATTAAAGAGATTATTTGTCTCCAGCCACTTA	TTATTAAAGAGATTATTTTTCTCCAGCCACTTA
+Ref	2837	2838	+	5386	HWI-EAS91_1_306UPAAXX:6:1:253:1162	14	15	-	36	T	A	ATGGTTTGGTCTAACTTTACCGCTACTAAATGC	ATGGTTTGGTCAAACTTTACCGCTACTAAATGC
+Ref	4662	4663	+	5386	HWI-EAS91_1_306UPAAXX:6:1:828:754	26	27	+	36	G	T	TTTGCGTGACTATTTTCGTGATATTGGTCGTATGGT	TTTGCGTGACTATTTTCGTGATATTGTTCGTATGGT
+Ref	4783	4784	+	5386	HWI-EAS91_1_306UPAAXX:6:1:1566:499	9	10	+	36	C	T	TGCGGTGCACTTTATGCGGACACTTCCTACAGGTAG	TGCGGTGCATTTTATGCGGACACTTCCTACAGGTAG
+Ref	2857	2858	+	5386	HWI-EAS91_1_306UPAAXX:6:1:578:971	15	16	+	36	G	T	CGCTACTAAATGCCGCGGATTGGTTTCG	CGCTACTAAATTCCGCGGATTGGTTTCG
+Ref	3112	3113	+	5386	HWI-EAS91_1_306UPAAXX:6:1:1721:1800	27	28	-	36	T	C	TCAAGGCTCTAATGTTCCTAACCC	TCAAGGCTCTAATGTCCCTAACCC
+Ref	4825	4826	+	5386	HWI-EAS91_1_306UPAAXX:6:1:815:1640	9	10	-	36	T	G	CCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCA	CCCTAATTTGGGTCGTCGGGTACGCAATCGCCGCCA
+Ref	4517	4518	+	5386	HWI-EAS91_1_306UPAAXX:6:1:1485:741	19	20	-	36	G	A	GAAATCGCGTAGAGGCTTTGCTATTCAGCGTTTGAT	GAAATCGCGTAGAGGCTTTACTATTCAGCGTTTGAT
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/lastz_maf.txt	Mon Nov 26 09:47:51 2012 -0500
@@ -0,0 +1,1982 @@
+##maf version=1 scoring=lastz.v1.00.23
+# lastz.v1.00.23 --yasra95short --ambiguousn --identity=0..100 --census=/Users/anton/galaxy_central/database/files/000/dataset_128.dat --coverage=0 --format=maf 
+#
+# hsp_threshold      = 10
+# gapped_threshold   = 14
+# x_drop             = 10
+# y_drop             = 14
+# gap_open_penalty   = 6
+# gap_extend_penalty = 1
+#        A    C    G    T
+#   A    1   -7   -7   -7
+#   C   -7    1   -7   -7
+#   G   -7   -7    1   -7
+#   T   -7   -7   -7    1
+a score=35
+s phiX 4294 35 + 5386 CCCCCAACTTGATATTAATAACACTATAGACCACC
+s read    1 35 -   36 CCCCCAACTTGATATTAATAACACTATAGACCACC
+
+a score=36
+s phiX 3521 36 + 5386 ATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGC
+s read    0 36 -   36 ATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGC
+
+a score=36
+s phiX 228 36 + 5386 GATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTC
+s read   0 36 +   36 GATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTC
+
+a score=36
+s phiX 2070 36 + 5386 GTATGTTTCTCCTGCTTATCACCTTCTTGAAGGCTT
+s read    0 36 +   36 GTATGTTTCTCCTGCTTATCACCTTCTTGAAGGCTT
+
+a score=35
+s phiX 1066 35 + 5386 GGTCAGATTGGTCGTCTTATTACCATTTCAACTAC
+s read    1 35 -   36 GGTCAGATTGGTCGTCTTATTACCATTTCAACTAC
+
+a score=36
+s phiX 1787 36 + 5386 GTCGTGTTCAACAGACCTATAAACATTCTGTGCCGC
+s read    0 36 +   36 GTCGTGTTCAACAGACCTATAAACATTCTGTGCCGC
+
+a score=36
+s phiX 1192 36 + 5386 GTAGACATTTTTACTTTTTATGTCCCTCATCGTCAC
+s read    0 36 +   36 GTAGACATTTTTACTTTTTATGTCCCTCATCGTCAC
+
+a score=33
+s phiX 4562 33 + 5386 GGTTGGTTTATCGTTTTTGACACTCTCACGTTG
+s read    0 33 +   36 GGTTGGTTTATCGTTTTTGACACTCTCACGTTG
+
+a score=36
+s phiX 2667 36 + 5386 GTTCGCTTTGAGTCTTCTTCGGTTCCGACTACCCTC
+s read    0 36 +   36 GTTCGCTTTGAGTCTTCTTCGGTTCCGACTACCCTC
+
+a score=36
+s phiX 4247 36 + 5386 GTTACTGAGAAGTTAATGGATGAATTGGCACAATGC
+s read    0 36 +   36 GTTACTGAGAAGTTAATGGATGAATTGGCACAATGC
+
+a score=36
+s phiX 2862 36 + 5386 GGATTGGTTTCGCTGAATCAGGTTATTAAAGAGATT
+s read    0 36 +   36 GGATTGGTTTCGCTGAATCAGGTTATTAAAGAGATT
+
+a score=36
+s phiX 2556 36 + 5386 GGTTTTCTTCATTGCATTCAGATGGATACATCTGTC
+s read    0 36 +   36 GGTTTTCTTCATTGCATTCAGATGGATACATCTGTC
+
+a score=34
+s phiX 2510 34 + 5386 GTCAACGTTATATTTTGATAGTTTGACGGTTAAT
+s read    0 34 +   36 GTCAACGTTATATTTTGATAGTTTGACGGTTAAT
+
+a score=36
+s phiX 5151 36 + 5386 GGATGAAAATGCTCACAATGACAAATCTGTCCACGG
+s read    0 36 +   36 GGATGAAAATGCTCACAATGACAAATCTGTCCACGG
+
+a score=36
+s phiX 1589 36 + 5386 AAGCTGCTTATGCTAATTTGCATACTGACCAAGAAC
+s read    0 36 -   36 AAGCTGCTTATGCTAATTTGCATACTGACCAAGAAC
+
+a score=36
+s phiX 4883 36 + 5386 GGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG
+s read    0 36 +   36 GGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG
+
+a score=36
+s phiX 5051 36 + 5386 GCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCA
+s read    0 36 +   36 GCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCA
+
+a score=36
+s phiX 4908 36 + 5386 GCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGT
+s read    0 36 +   36 GCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGT
+
+a score=36
+s phiX 2862 36 + 5386 GGATTGGTTTCGCTGAATCAGGTTATTAAAGAGATT
+s read    0 36 +   36 GGATTGGTTTCGCTGAATCAGGTTATTAAAGAGATT
+
+a score=30
+s phiX 4172 30 + 5386 GTTGAGTTCGATAATGGTGATATGTATGTT
+s read    0 30 +   36 GTTGAGTTCGATAATGGTGATATGTATGTT
+
+a score=36
+s phiX 1700 36 + 5386 GTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCAT
+s read    0 36 +   36 GTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCAT
+
+a score=36
+s phiX 1682 36 + 5386 CTTATGACGCTGACAACCGTCCTTTACTTGTCATGC
+s read    0 36 -   36 CTTATGACGCTGACAACCGTCCTTTACTTGTCATGC
+
+a score=35
+s phiX 3125 35 + 5386 GAGGCCGCCCCTAGTTTTGTTTCTGGTGCTATGGC
+s read    1 35 -   36 GAGGCCGCCCCTAGTTTTGTTTCTGGTGCTATGGC
+
+a score=36
+s phiX 1664 36 + 5386 CATTTGGAGGTAAAACCTCTTATGACGCTGACAACC
+s read    0 36 -   36 CATTTGGAGGTAAAACCTCTTATGACGCTGACAACC
+
+a score=36
+s phiX 3212 36 + 5386 GTTTCTGATAAGTTGCTTGATTTGGTTGGACTTGGT
+s read    0 36 +   36 GTTTCTGATAAGTTGCTTGATTTGGTTGGACTTGGT
+
+a score=36
+s phiX 3419 36 + 5386 GAGATTGCCGAGATGCAAAATGAGACTCAAAAAGAG
+s read    0 36 +   36 GAGATTGCCGAGATGCAAAATGAGACTCAAAAAGAG
+
+a score=36
+s phiX 512 36 + 5386 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGC
+s read   0 36 +   36 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGC
+
+a score=33
+s phiX 2881 33 + 5386 AGGTTATTAAAGAGATTATTTGTCTCCAGCCAC
+s read    3 33 -   36 AGGTTATTAAAGAGATTATTTGTCTCCAGCCAC
+
+a score=36
+s phiX 4470 36 + 5386 GTTCAAGATTGCTGGAGGCCTCCACTATGAAATCGC
+s read    0 36 +   36 GTTCAAGATTGCTGGAGGCCTCCACTATGAAATCGC
+
+a score=36
+s phiX 1228 36 + 5386 GTTTATGGTGAACAGTGGATTAAGTTCATGAAGGAT
+s read    0 36 +   36 GTTTATGGTGAACAGTGGATTAAGTTCATGAAGGAT
+
+a score=36
+s phiX 614 36 + 5386 GAGTTTATTGCTGCCGTCATTGCTTATTATGTTCAT
+s read   0 36 +   36 GAGTTTATTGCTGCCGTCATTGCTTATTATGTTCAT
+
+a score=36
+s phiX 256 36 + 5386 GCACGTTCGTCAAGGACTGGTTTAGATATGAGTCAC
+s read   0 36 -   36 GCACGTTCGTCAAGGACTGGTTTAGATATGAGTCAC
+
+a score=36
+s phiX 2380 36 + 5386 TTAGGAGTTTAATCATGTTTCAGACTTTTATTTCTC
+s read    0 36 -   36 TTAGGAGTTTAATCATGTTTCAGACTTTTATTTCTC
+
+a score=36
+s phiX 4097 36 + 5386 ATGCTTGGCTTCCATAAGCAGATGGATAACCGCATC
+s read    0 36 -   36 ATGCTTGGCTTCCATAAGCAGATGGATAACCGCATC
+
+a score=36
+s phiX 5098 36 + 5386 GCTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAG
+s read    0 36 +   36 GCTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAG
+
+a score=36
+s phiX 4253 36 + 5386 GAGAAGTTAATGGATGAATTGGCACAATGCTACAAT
+s read    0 36 +   36 GAGAAGTTAATGGATGAATTGGCACAATGCTACAAT
+
+a score=36
+s phiX 3407 36 + 5386 GACAATCAGAAAGAGATTGCCGAGATGCAAAATGAG
+s read    0 36 +   36 GACAATCAGAAAGAGATTGCCGAGATGCAAAATGAG
+
+a score=36
+s phiX 4042 36 + 5386 GGCTCTTAAACCTGCTATTGAGGCTTGTGGCATTTC
+s read    0 36 -   36 GGCTCTTAAACCTGCTATTGAGGCTTGTGGCATTTC
+
+a score=36
+s phiX 4559 36 + 5386 GATGGTTGGTTTATCGTTTTTGACACTCTCACGTTG
+s read    0 36 +   36 GATGGTTGGTTTATCGTTTTTGACACTCTCACGTTG
+
+a score=36
+s phiX 1887 36 + 5386 GACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGC
+s read    0 36 +   36 GACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGC
+
+a score=35
+s phiX 3433 35 + 5386 GCAAAATGAGACTCAAAAAGAGATTGCTGGCATTC
+s read    1 35 -   36 GCAAAATGAGACTCAAAAAGAGATTGCTGGCATTC
+
+a score=36
+s phiX 4538 36 + 5386 GCAATGCGACAGGCTCATGCTGATGGTTGGTTTATC
+s read    0 36 +   36 GCAATGCGACAGGCTCATGCTGATGGTTGGTTTATC
+
+a score=36
+s phiX 1827 36 + 5386 CTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGC
+s read    0 36 -   36 CTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGC
+
+a score=36
+s phiX 3707 36 + 5386 GACTTAGTTCATCAGCAAACGCAGAATCAGCGGTAT
+s read    0 36 +   36 GACTTAGTTCATCAGCAAACGCAGAATCAGCGGTAT
+
+a score=36
+s phiX 3325 36 + 5386 GCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGT
+s read    0 36 +   36 GCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGT
+
+a score=36
+s phiX 4175 36 + 5386 GAGTTCGATAATGGTGATATGTATGTTGACGGCCAT
+s read    0 36 +   36 GAGTTCGATAATGGTGATATGTATGTTGACGGCCAT
+
+a score=36
+s phiX 21 36 + 5386 GCAGAAGTTAACACTTTCGGATATTTCTGATGAGTC
+s read  0 36 +   36 GCAGAAGTTAACACTTTCGGATATTTCTGATGAGTC
+
+a score=36
+s phiX 2556 36 + 5386 GGTTTTCTTCATTGCATTCAGATGGATACATCTGTC
+s read    0 36 -   36 GGTTTTCTTCATTGCATTCAGATGGATACATCTGTC
+
+a score=36
+s phiX 3276 36 + 5386 ATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGC
+s read    0 36 -   36 ATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGC
+
+a score=36
+s phiX 3591 36 + 5386 AGCAACAGCAGGTTTCCGAGATTATGCGCCAAATGC
+s read    0 36 -   36 AGCAACAGCAGGTTTCCGAGATTATGCGCCAAATGC
+
+a score=35
+s phiX 357 35 + 5386 GATGCTGTTCAACCACTAATAGGTAAGAAATCATG
+s read   0 35 +   36 GATGCTGTTCAACCACTAATAGGTAAGAAATCATG
+
+a score=36
+s phiX 1774 36 + 5386 GGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAA
+s read    0 36 +   36 GGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAA
+
+a score=36
+s phiX 3503 36 + 5386 GTATATGCACAAAATGAGATGCTTGCTTATCAACAG
+s read    0 36 +   36 GTATATGCACAAAATGAGATGCTTGCTTATCAACAG
+
+a score=36
+s phiX 1553 36 + 5386 CGACTTCTACCACATCTATTGACATTATGGGTCTGC
+s read    0 36 -   36 CGACTTCTACCACATCTATTGACATTATGGGTCTGC
+
+a score=36
+s phiX 1001 36 + 5386 TGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGC
+s read    0 36 -   36 TGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGC
+
+a score=36
+s phiX 3625 36 + 5386 GCTTACTCAAGCTCAAACGGCTGGTCAGTATTTTAC
+s read    0 36 -   36 GCTTACTCAAGCTCAAACGGCTGGTCAGTATTTTAC
+
+a score=36
+s phiX 3571 36 + 5386 GGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTC
+s read    0 36 +   36 GGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTC
+
+a score=36
+s phiX 1264 36 + 5386 GGTGTTAATGCCACTCCTCTCCCGACTGTTAACACT
+s read    0 36 +   36 GGTGTTAATGCCACTCCTCTCCCGACTGTTAACACT
+
+a score=36
+s phiX 1331 36 + 5386 GCACGATTAACCCTGATACCAATAAAATCCCTAAGC
+s read    0 36 -   36 GCACGATTAACCCTGATACCAATAAAATCCCTAAGC
+
+a score=36
+s phiX 4253 36 + 5386 GAGAAGTTAATGGATGAATTGGCACAATGCTACAAT
+s read    0 36 +   36 GAGAAGTTAATGGATGAATTGGCACAATGCTACAAT
+
+a score=36
+s phiX 4169 36 + 5386 GGCGTTGAGTTCGATAATGGTGATATGTATGTTGAC
+s read    0 36 -   36 GGCGTTGAGTTCGATAATGGTGATATGTATGTTGAC
+
+a score=30
+s phiX 2811 30 + 5386 GTTTATGTTGGTTTCATGGTTTGGTCTAAC
+s read    6 30 -   36 GTTTATGTTGGTTTCATGGTTTGGTCTAAC
+
+a score=36
+s phiX 3118 36 + 5386 CCCTGATGAGGCCGCCCCTAGTTTTGTTTCTGGTGC
+s read    0 36 -   36 CCCTGATGAGGCCGCCCCTAGTTTTGTTTCTGGTGC
+
+a score=36
+s phiX 1669 36 + 5386 GGAGGTAAAACCTCTTATGACGCTGACAACCGTCCT
+s read    0 36 +   36 GGAGGTAAAACCTCTTATGACGCTGACAACCGTCCT
+
+a score=36
+s phiX 639 36 + 5386 ATTATGTTCATCCCGTCAACATTCAAACGGCCTGTC
+s read   0 36 -   36 ATTATGTTCATCCCGTCAACATTCAAACGGCCTGTC
+
+a score=35
+s phiX 2749 35 + 5386 GTTATTATACCGTCAAGGACTGTGTGACTATTGAC
+s read    0 35 +   36 GTTATTATACCGTCAAGGACTGTGTGACTATTGAC
+
+a score=36
+s phiX 4605 36 + 5386 GATTAGAGGCGTTTTATGATAATCCCAATGCTTTGC
+s read    0 36 -   36 GATTAGAGGCGTTTTATGATAATCCCAATGCTTTGC
+
+a score=36
+s phiX 3572 36 + 5386 GAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCC
+s read    0 36 -   36 GAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCC
+
+a score=36
+s phiX 5104 36 + 5386 GCTACTTCCCAAGAAGCTGTTCAGAATCAGAATGAG
+s read    0 36 +   36 GCTACTTCCCAAGAAGCTGTTCAGAATCAGAATGAG
+
+a score=21
+s phiX  0 21 + 5386 GAGTTTTATCGCTTCCATGAC
+s read 15 21 -   36 GAGTTTTATCGCTTCCATGAC
+
+a score=36
+s phiX 1673 36 + 5386 GTAAAACCTCTTATGACGCTGACAACCGTCCTTTAC
+s read    0 36 -   36 GTAAAACCTCTTATGACGCTGACAACCGTCCTTTAC
+
+a score=36
+s phiX 4094 36 + 5386 CCAATGCTTGGCTTCCATAAGCAGATGGATAACCGC
+s read    0 36 -   36 CCAATGCTTGGCTTCCATAAGCAGATGGATAACCGC
+
+a score=36
+s phiX 4550 36 + 5386 GCTCATGCTGATGGTTGGTTTATCGTTTTTGACACT
+s read    0 36 +   36 GCTCATGCTGATGGTTGGTTTATCGTTTTTGACACT
+
+a score=36
+s phiX 3283 36 + 5386 TGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGC
+s read    0 36 -   36 TGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGC
+
+a score=20
+s phiX 2937 20 + 5386 GTGCTATTGCTGGCGGTATT
+s read    0 20 +   36 GTGCTATTGCTGGCGGTATT
+
+a score=36
+s phiX 4004 36 + 5386 GAATGTCACGCTGATTATTTTGACTTTGAGCGTATC
+s read    0 36 +   36 GAATGTCACGCTGATTATTTTGACTTTGAGCGTATC
+
+a score=36
+s phiX 2478 36 + 5386 GCACCTGTTTTACAGACACCTAAAGCTACATCGTCA
+s read    0 36 +   36 GCACCTGTTTTACAGACACCTAAAGCTACATCGTCA
+
+a score=36
+s phiX 1081 36 + 5386 CTTATTACCATTTCAACTACTCCGGTTATCGCTGGC
+s read    0 36 -   36 CTTATTACCATTTCAACTACTCCGGTTATCGCTGGC
+
+a score=35
+s phiX 3044 35 + 5386 GCTACCGATAACAATACTGTAGGCATGGGTGATGC
+s read    1 35 -   36 GCTACCGATAACAATACTGTAGGCATGGGTGATGC
+
+a score=36
+s phiX 1114 36 + 5386 GGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTC
+s read    0 36 -   36 GGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTC
+
+a score=33
+s phiX 635 33 + 5386 GCTTATTATGTTCATCCCGTCAACATTCAAACG
+s read   0 33 +   36 GCTTATTATGTTCATCCCGTCAACATTCAAACG
+
+a score=26
+s phiX 1138 26 + 5386 GTTGGCGCTCTCCGTCTTTCTCCATT
+s read    0 26 +   36 GTTGGCGCTCTCCGTCTTTCTCCATT
+
+a score=36
+s phiX 851 36 + 5386 CTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTC
+s read   0 36 -   36 CTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTC
+
+a score=36
+s phiX 5271 36 + 5386 GATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTT
+s read    0 36 +   36 GATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTT
+
+a score=30
+s phiX 4329 36 + 5386 GCCCCGAAGGGGACGAAAAATGGTTTTTAGAGAACG
+s read    0 36 +   36 GCCCCGAAGGGGACNANAAATGGTTTTTAGAGAACG
+
+a score=36
+s phiX 4890 36 + 5386 GTATGCCCATCGCAGTTCGCTACACGCAGGACGCTT
+s read    0 36 +   36 GTATGCCCATCGCAGTTCGCTACACGCAGGACGCTT
+
+a score=34
+s phiX 4784 34 + 5386 TTTATGCGGACACTTCCTACAGGTAGCGTTGACC
+s read    2 34 -   36 TTTATGCGGACACTTCCTACAGGTAGCGTTGACC
+
+a score=36
+s phiX 3618 36 + 5386 GCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGT
+s read    0 36 +   36 GCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGT
+
+a score=32
+s phiX 4454 32 + 5386 GGTATTAAGGATGAGTGTTCAAGATTGCTGGA
+s read    0 32 +   36 GGTATTAAGGATGAGTGTTCAAGATTGCTGGA
+
+a score=36
+s phiX 631 36 + 5386 CATTGCTTATTATGTTCATCCCGTCAACATTCAAAC
+s read   0 36 -   36 CATTGCTTATTATGTTCATCCCGTCAACATTCAAAC
+
+a score=35
+s phiX 2963 35 + 5386 GCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGG
+s read    0 35 +   36 GCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGG
+
+a score=36
+s phiX 2762 36 + 5386 CAAGGACTGTGTGACTATTGACGTCCTTCCCCGTAC
+s read    0 36 -   36 CAAGGACTGTGTGACTATTGACGTCCTTCCCCGTAC
+
+a score=36
+s phiX 2765 36 + 5386 GGACTGTGTGACTATTGACGTCCTTCCCCGTACGCC
+s read    0 36 -   36 GGACTGTGTGACTATTGACGTCCTTCCCCGTACGCC
+
+a score=36
+s phiX 1718 36 + 5386 GCTCTAATCTCTGGGCATCTGGCTATGATGTTGATG
+s read    0 36 +   36 GCTCTAATCTCTGGGCATCTGGCTATGATGTTGATG
+
+a score=36
+s phiX 3099 36 + 5386 AAGGCTCTAATGTTCCTAACCCTGATGAGGCCGCCC
+s read    0 36 -   36 AAGGCTCTAATGTTCCTAACCCTGATGAGGCCGCCC
+
+a score=29
+s phiX 597 29 + 5386 GCTTTCCTGCTCCTGTTGAGTTTATTGCT
+s read   0 29 +   36 GCTTTCCTGCTCCTGTTGAGTTTATTGCT
+
+a score=36
+s phiX 4125 36 + 5386 ACCGCATCAAGCTCTTGGAAGAGATTCTGTCTTTTC
+s read    0 36 -   36 ACCGCATCAAGCTCTTGGAAGAGATTCTGTCTTTTC
+
+a score=36
+s phiX 4025 36 + 5386 GACTTTGAGCGTATCGAGGCTCTTAAACCTGCTATT
+s read    0 36 +   36 GACTTTGAGCGTATCGAGGCTCTTAAACCTGCTATT
+
+a score=36
+s phiX 2620 36 + 5386 GTGCTGATATTGCTTTTGATGCCGACCCTAAATTTT
+s read    0 36 +   36 GTGCTGATATTGCTTTTGATGCCGACCCTAAATTTT
+
+a score=36
+s phiX 2748 36 + 5386 GGTTATTATACCGTCAAGGACTGTGTGACTATTGAC
+s read    0 36 +   36 GGTTATTATACCGTCAAGGACTGTGTGACTATTGAC
+
+a score=36
+s phiX 378 36 + 5386 GGTAAGAAATCATGAGTCAAGTTACTGAACAATCCG
+s read   0 36 +   36 GGTAAGAAATCATGAGTCAAGTTACTGAACAATCCG
+
+a score=36
+s phiX 2159 36 + 5386 GCCACCATGATTATGACCAGTGTTTCCAGTCCGTTC
+s read    0 36 +   36 GCCACCATGATTATGACCAGTGTTTCCAGTCCGTTC
+
+a score=36
+s phiX 2872 36 + 5386 CGCTGAATCAGGTTATTAAAGAGATTATTTGTCTCC
+s read    0 36 -   36 CGCTGAATCAGGTTATTAAAGAGATTATTTGTCTCC
+
+a score=35
+s phiX 1507 35 + 5386 TGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTC
+s read    1 35 -   36 TGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTC
+
+a score=36
+s phiX 3862 36 + 5386 TTTCTGGAAAGACGGTAAAGCTGATGGTATTGGCTC
+s read    0 36 -   36 TTTCTGGAAAGACGGTAAAGCTGATGGTATTGGCTC
+
+a score=36
+s phiX 5186 36 + 5386 GAGTGCTTAATCCAACTTACCAAGCTGGGTTACGAC
+s read    0 36 +   36 GAGTGCTTAATCCAACTTACCAAGCTGGGTTACGAC
+
+a score=36
+s phiX 4195 36 + 5386 GTATGTTGACGGCCATAAGGCTGCTTCTGACGTTCG
+s read    0 36 +   36 GTATGTTGACGGCCATAAGGCTGCTTCTGACGTTCG
+
+a score=36
+s phiX 634 36 + 5386 TGCTTATTATGTTCATCCCGTCAACATTCAAACGGC
+s read   0 36 -   36 TGCTTATTATGTTCATCCCGTCAACATTCAAACGGC
+
+a score=35
+s phiX 1293 35 + 5386 TAACACTACTGGTTATATTGACCATGCCGCTTTTC
+s read    1 35 -   36 TAACACTACTGGTTATATTGACCATGCCGCTTTTC
+
+a score=36
+s phiX 5156 36 + 5386 AAAATGCTCACAATGACAAATCTGTCCACGGAGTGC
+s read    0 36 -   36 AAAATGCTCACAATGACAAATCTGTCCACGGAGTGC
+
+a score=36
+s phiX 771 36 + 5386 GCGCAGGAAACACTGACGTTCTTACTGACGCAGAAG
+s read   0 36 +   36 GCGCAGGAAACACTGACGTTCTTACTGACGCAGAAG
+
+a score=36
+s phiX 1223 36 + 5386 GTCACGTTTATGGTGAACAGTGGATTAAGTTCATGA
+s read    0 36 +   36 GTCACGTTTATGGTGAACAGTGGATTAAGTTCATGA
+
+a score=33
+s phiX 1543 33 + 5386 CGCCAAATGACGACTTCTACCACATCTATTGAC
+s read    3 33 -   36 CGCCAAATGACGACTTCTACCACATCTATTGAC
+
+a score=36
+s phiX 4839 36 + 5386 GCAATCGCCGCCAGTTAAATAGCTTGCAAAATACGT
+s read    0 36 +   36 GCAATCGCCGCCAGTTAAATAGCTTGCAAAATACGT
+
+a score=35
+s phiX 203 35 + 5386 GATTCTGTCAAAAACTGACGCGTTGGATGAGGAGA
+s read   0 35 +   36 GATTCTGTCAAAAACTGACGCGTTGGATGAGGAGA
+
+a score=29
+s phiX 3262 29 + 5386 TGATAAAGGAAAGGATACTCGTGATTATC
+s read    7 29 -   36 TGATAAAGGAAAGGATACTCGTGATTATC
+
+a score=28
+s phiX 2480 36 + 5386 ACCTGTTTTACAGACACCTAAAGCTACATCGTCAAC
+s read    0 36 -   36 ACCTGTTTTAAAGACACCTAAAGCTACATCGTCAAC
+
+a score=36
+s phiX 331 36 + 5386 AAGAGCGTGGATTACTATCTGAGTCCGATGCTGTTC
+s read   0 36 -   36 AAGAGCGTGGATTACTATCTGAGTCCGATGCTGTTC
+
+a score=36
+s phiX 3977 36 + 5386 TTTATGGTTCGTTCTTATTACCCTTCTGAATGTCAC
+s read    0 36 -   36 TTTATGGTTCGTTCTTATTACCCTTCTGAATGTCAC
+
+a score=36
+s phiX 4864 36 + 5386 GCAAAATACGTGGCCTTATGGTTACAGTATGCCCAT
+s read    0 36 +   36 GCAAAATACGTGGCCTTATGGTTACAGTATGCCCAT
+
+a score=36
+s phiX 3270 36 + 5386 GAAAGGATACTCGTGATTATCTTGCTGCTGCATTTC
+s read    0 36 -   36 GAAAGGATACTCGTGATTATCTTGCTGCTGCATTTC
+
+a score=36
+s phiX 4173 36 + 5386 TTGAGTTCGATAATGGTGATATGTATGTTGACGGCC
+s read    0 36 -   36 TTGAGTTCGATAATGGTGATATGTATGTTGACGGCC
+
+a score=30
+s phiX 3809 30 + 5386 GTGGTTGATATTTTTCATGGTATTGATAAA
+s read    0 30 +   36 GTGGTTGATATTTTTCATGGTATTGATAAA
+
+a score=28
+s phiX 4634 28 + 5386 GCTTTGCGTGACTATTTTCGTGATATTG
+s read    0 28 +   36 GCTTTGCGTGACTATTTTCGTGATATTG
+
+a score=36
+s phiX 2737 36 + 5386 GCCATGATGGTGGTTATTATACCGTCAAGGACTGTG
+s read    0 36 +   36 GCCATGATGGTGGTTATTATACCGTCAAGGACTGTG
+
+a score=14
+s phiX 2191 14 + 5386 GTTCAGTTGTTGCA
+s read    0 14 +   36 GTTCAGTTGTTGCA
+
+a score=35
+s phiX 2702 35 + 5386 CCCGACTGCCTATGATGTTTATCCTTTGAATGGTC
+s read    1 35 -   36 CCCGACTGCCTATGATGTTTATCCTTTGAATGGTC
+
+a score=36
+s phiX 2942 36 + 5386 ATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGC
+s read    0 36 -   36 ATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGC
+
+a score=36
+s phiX 3860 36 + 5386 AATTTCTGGAAAGACGGTAAAGCTGATGGTATTGGC
+s read    0 36 -   36 AATTTCTGGAAAGACGGTAAAGCTGATGGTATTGGC
+
+a score=36
+s phiX 3092 36 + 5386 GCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAG
+s read    0 36 +   36 GCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAG
+
+a score=36
+s phiX 3150 36 + 5386 GTGCTATGGCTAAAGCTGGTAAAGGACTTCTTGAAG
+s read    0 36 +   36 GTGCTATGGCTAAAGCTGGTAAAGGACTTCTTGAAG
+
+a score=36
+s phiX 1192 36 + 5386 GTAGACATTTTTACTTTTTATGTCCCTCATCGTCAC
+s read    0 36 +   36 GTAGACATTTTTACTTTTTATGTCCCTCATCGTCAC
+
+a score=36
+s phiX 156 36 + 5386 CGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGC
+s read   0 36 -   36 CGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGC
+
+a score=36
+s phiX 4791 36 + 5386 GGACACTTCCTACAGGTAGCGTTGACCCTAATTTTG
+s read    0 36 +   36 GGACACTTCCTACAGGTAGCGTTGACCCTAATTTTG
+
+a score=36
+s phiX 3848 36 + 5386 GATACTTGGAACAATTTCTGGAAAGACGGTAAAGCT
+s read    0 36 +   36 GATACTTGGAACAATTTCTGGAAAGACGGTAAAGCT
+
+a score=35
+s phiX 2742 35 + 5386 GATGGTGGTTATTATACCGTCAAGGACTGTGTGAC
+s read    1 35 -   36 GATGGTGGTTATTATACCGTCAAGGACTGTGTGAC
+
+a score=36
+s phiX 3014 36 + 5386 GCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTACC
+s read    0 36 +   36 GCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTACC
+
+a score=36
+s phiX 1090 36 + 5386 ATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTC
+s read    0 36 -   36 ATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTC
+
+a score=35
+s phiX 797 35 + 5386 GACGCAGAAGAAAACGTGCGTCAAAAATTACGTGC
+s read   1 35 -   36 GACGCAGAAGAAAACGTGCGTCAAAAATTACGTGC
+
+a score=36
+s phiX 4865 36 + 5386 CAAAATACGTGGCCTTATGGTTACAGTATGCCCATC
+s read    0 36 -   36 CAAAATACGTGGCCTTATGGTTACAGTATGCCCATC
+
+a score=36
+s phiX 4403 36 + 5386 GAACGCCCTCTTAAGGATATTCGCGATGAGTATAAT
+s read    0 36 +   36 GAACGCCCTCTTAAGGATATTCGCGATGAGTATAAT
+
+a score=36
+s phiX 1654 36 + 5386 GTTATTTCTTCATTTGGAGGTAAAACCTCTTATGAC
+s read    0 36 -   36 GTTATTTCTTCATTTGGAGGTAAAACCTCTTATGAC
+
+a score=36
+s phiX 5161 36 + 5386 GCTCACAATGACAAATCTGTCCACGGAGTGCTTAAT
+s read    0 36 +   36 GCTCACAATGACAAATCTGTCCACGGAGTGCTTAAT
+
+a score=35
+s phiX 1248 35 + 5386 TAAGTTCATGAAGGATGGTGTTAATGCCACTCCTC
+s read    1 35 -   36 TAAGTTCATGAAGGATGGTGTTAATGCCACTCCTC
+
+a score=36
+s phiX 3260 36 + 5386 GCTGATAAAGGAAAGGATACTCGTGATTATCTTGCT
+s read    0 36 +   36 GCTGATAAAGGAAAGGATACTCGTGATTATCTTGCT
+
+a score=36
+s phiX 3095 36 + 5386 ATTCAAGGCTCTAATGTTCCTAACCCTGATGAGGCC
+s read    0 36 -   36 ATTCAAGGCTCTAATGTTCCTAACCCTGATGAGGCC
+
+a score=35
+s phiX 2811 35 + 5386 GTTTATGTTGGTTTCATGGTTTGGTCTAACTTTAC
+s read    1 35 -   36 GTTTATGTTGGTTTCATGGTTTGGTCTAACTTTAC
+
+a score=30
+s phiX 80 30 + 5386 GAATTACTACTGCTTGTTTACGAATTAAAT
+s read  0 30 +   36 GAATTACTACTGCTTGTTTACGAATTAAAT
+
+a score=36
+s phiX 3458 36 + 5386 GCTGGCATTCAGTCGGCGACTTCACGCCAGAATACG
+s read    0 36 +   36 GCTGGCATTCAGTCGGCGACTTCACGCCAGAATACG
+
+a score=35
+s phiX 788 35 + 5386 GTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAA
+s read   0 35 +   36 GTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAA
+
+a score=36
+s phiX 3698 36 + 5386 GCTGAGGTTGACTTAGTTCATCAGCAAACGCAGAAT
+s read    0 36 +   36 GCTGAGGTTGACTTAGTTCATCAGCAAACGCAGAAT
+
+a score=31
+s phiX 2640 31 + 5386 GCCGACCCTAAATTTTTTGCCTGTTTGGTTC
+s read    0 31 +   36 GCCGACCCTAAATTTTTTGCCTGTTTGGTTC
+
+a score=36
+s phiX 304 36 + 5386 GTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTG
+s read   0 36 +   36 GTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTG
+
+a score=35
+s phiX 3065 35 + 5386 GGCATGGGTGATGCTGGTATTAAATCTGCCATTCA
+s read    0 35 +   36 GGCATGGGTGATGCTGGTATTAAATCTGCCATTCA
+
+a score=36
+s phiX 4427 36 + 5386 GATGAGTATAATTACCCCAAAAAGAAAGGTATTAAG
+s read    0 36 +   36 GATGAGTATAATTACCCCAAAAAGAAAGGTATTAAG
+
+a score=36
+s phiX 1460 36 + 5386 AAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATC
+s read    0 36 -   36 AAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATC
+
+a score=36
+s phiX 3999 36 + 5386 CTTCTGAATGTCACGCTGATTATTTTGACTTTGAGC
+s read    0 36 -   36 CTTCTGAATGTCACGCTGATTATTTTGACTTTGAGC
+
+a score=36
+s phiX 219 36 + 5386 GACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTT
+s read   0 36 +   36 GACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTT
+
+a score=33
+s phiX 3193 33 + 5386 GCAGGCTGGCACTTCTGCCGTTTCTGATAAGTT
+s read    0 33 +   36 GCAGGCTGGCACTTCTGCCGTTTCTGATAAGTT
+
+a score=32
+s phiX 1265 32 + 5386 GTGTTAATGCCACTCCTCTCCCGACTGTTAAC
+s read    0 32 +   36 GTGTTAATGCCACTCCTCTCCCGACTGTTAAC
+
+a score=36
+s phiX 4595 36 + 5386 GCTGACGACCGATTAGAGGCGTTTTATGATAATCCC
+s read    0 36 -   36 GCTGACGACCGATTAGAGGCGTTTTATGATAATCCC
+
+a score=35
+s phiX 1171 35 + 5386 GGCCTTGCTATTGACTCTACTGTAGACATTTTTAC
+s read    1 35 -   36 GGCCTTGCTATTGACTCTACTGTAGACATTTTTAC
+
+a score=36
+s phiX 635 36 + 5386 GCTTATTATGTTCATCCCGTCAACATTCAAACGGCC
+s read   0 36 -   36 GCTTATTATGTTCATCCCGTCAACATTCAAACGGCC
+
+a score=36
+s phiX 2872 36 + 5386 CGCTGAATCAGGTTATTAAAGAGATTATTTGTCTCC
+s read    0 36 -   36 CGCTGAATCAGGTTATTAAAGAGATTATTTGTCTCC
+
+a score=36
+s phiX 1013 36 + 5386 AAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCC
+s read    0 36 -   36 AAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCC
+
+a score=36
+s phiX 2688 36 + 5386 GTTCCGACTACCCTCCCGACTGCCTATGATGTTTAT
+s read    0 36 +   36 GTTCCGACTACCCTCCCGACTGCCTATGATGTTTAT
+
+a score=28
+s phiX 2147 36 + 5386 GCGTACTTATTCGCCACCATGATTATGACCAGTGTT
+s read    0 36 +   36 GCGTACTTATTCGCCACCATGATTATTACCAGTGTT
+
+a score=35
+s phiX 5190 35 + 5386 GCTTAATCCAACTTACCAAGCTGGGTTACGACGCG
+s read    0 35 +   36 GCTTAATCCAACTTACCAAGCTGGGTTACGACGCG
+
+a score=36
+s phiX 1589 36 + 5386 AAGCTGCTTATGCTAATTTGCATACTGACCAAGAAC
+s read    0 36 -   36 AAGCTGCTTATGCTAATTTGCATACTGACCAAGAAC
+
+a score=27
+s phiX 570 35 + 5386 GTACGCTGGACTTTGTGGGATACCCTCGCTTTCCT
+s read   0 35 +   36 GTACGCTGTACTTTGTGGGATACCCTCGCTTTCCT
+
+a score=36
+s phiX 241 36 + 5386 GGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGT
+s read   0 36 +   36 GGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGT
+
+a score=36
+s phiX 337 36 + 5386 GTGGATTACTATCTGAGTCCGATGCTGTTCAACCAC
+s read   0 36 +   36 GTGGATTACTATCTGAGTCCGATGCTGTTCAACCAC
+
+a score=30
+s phiX 1111 30 + 5386 GCTGGCGACTCCTTCGAGATGGACGCCGTT
+s read    0 30 +   36 GCTGGCGACTCCTTCGAGATGGACGCCGTT
+
+a score=34
+s phiX 1253 34 + 5386 TCATGAAGGATGGTGTTAATGCCACTCCTCTCCC
+s read    2 34 -   36 TCATGAAGGATGGTGTTAATGCCACTCCTCTCCC
+
+a score=18
+s phiX 3730 18 + 5386 GAATCAGCGGTATGGCTC
+s read    0 18 +   36 GAATCAGCGGTATGGCTC
+
+a score=28
+s phiX 2969 36 + 5386 GCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGT
+s read    0 36 +   36 GCTGGTGGCGCCATGTCTAAATTTTTTGGAGGCGGT
+
+a score=36
+s phiX 5150 36 + 5386 GGGATGAAAATGCTCACAATGACAAATCTGTCCACG
+s read    0 36 +   36 GGGATGAAAATGCTCACAATGACAAATCTGTCCACG
+
+a score=36
+s phiX 347 36 + 5386 ATCTGAGTCCGATGCTGTTCAACCACTAATAGGTAA
+s read   0 36 -   36 ATCTGAGTCCGATGCTGTTCAACCACTAATAGGTAA
+
+a score=35
+s phiX 4887 35 + 5386 ACAGTATGCCCATCGCAGTTCGCTACACGCAGGAC
+s read    1 35 -   36 ACAGTATGCCCATCGCAGTTCGCTACACGCAGGAC
+
+a score=33
+s phiX 3971 33 + 5386 GGCTTTTTTATGGTTCGTTCTTATTACCCTTCT
+s read    0 33 +   36 GGCTTTTTTATGGTTCGTTCTTATTACCCTTCT
+
+a score=36
+s phiX 5032 36 + 5386 GTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGC
+s read    0 36 +   36 GTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGC
+
+a score=35
+s phiX 1551 35 + 5386 GACGACTTCTACCACATCTATTGACATTATGGGTC
+s read    1 35 -   36 GACGACTTCTACCACATCTATTGACATTATGGGTC
+
+a score=36
+s phiX 1763 36 + 5386 AAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAAC
+s read    0 36 -   36 AAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAAC
+
+a score=36
+s phiX 1528 36 + 5386 GAGACTGAGCTTTCTCGCCAAATGACGACTTCTACC
+s read    0 36 +   36 GAGACTGAGCTTTCTCGCCAAATGACGACTTCTACC
+
+a score=36
+s phiX 4949 36 + 5386 CCTGTTGATGCTAAAGGTGAGCCGCTTAAAGCTACC
+s read    0 36 -   36 CCTGTTGATGCTAAAGGTGAGCCGCTTAAAGCTACC
+
+a score=34
+s phiX 4483 34 + 5386 GGAGGCCTCCACTATGAAATCGCGTAGAGGCTTT
+s read    0 34 -   36 GGAGGCCTCCACTATGAAATCGCGTAGAGGCTTT
+
+a score=27
+s phiX 4766 35 + 5386 CATTTCCATGCGGTGCACTTTATGCGGACACTTCC
+s read    1 35 -   36 CATTTCCATGCGGTGCATTTTATGCGGACACTTCC
+
+a score=36
+s phiX 176 36 + 5386 CTTTGCGACCTTTCGCCATCAACTAACGATTCTGTC
+s read   0 36 -   36 CTTTGCGACCTTTCGCCATCAACTAACGATTCTGTC
+
+a score=36
+s phiX 2576 36 + 5386 GATGGATACATCTGTCAACGCCGCTAATCAGGTTGT
+s read    0 36 +   36 GATGGATACATCTGTCAACGCCGCTAATCAGGTTGT
+
+a score=36
+s phiX 155 36 + 5386 GCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCG
+s read   0 36 +   36 GCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCG
+
+a score=36
+s phiX 226 36 + 5386 TGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGT
+s read   0 36 +   36 TGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGT
+
+a score=36
+s phiX 573 36 + 5386 CGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC
+s read   0 36 -   36 CGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC
+
+a score=36
+s phiX 3020 36 + 5386 GGTGGCATTCAAGGTGATGTGCTTGCTACCGATAAC
+s read    0 36 +   36 GGTGGCATTCAAGGTGATGTGCTTGCTACCGATAAC
+
+a score=36
+s phiX 3730 36 + 5386 GAATCAGCGGTATGGCTCTTCTCATATTGGCGCTAC
+s read    0 36 -   36 GAATCAGCGGTATGGCTCTTCTCATATTGGCGCTAC
+
+a score=36
+s phiX 2435 36 + 5386 TTCTGATAAGCTGGTTCTCACTTCTGTTACTCCAGC
+s read    0 36 +   36 TTCTGATAAGCTGGTTCTCACTTCTGTTACTCCAGC
+
+a score=36
+s phiX 2709 36 + 5386 GCCTATGATGTTTATCCTTTGAATGGTCGCCATGAT
+s read    0 36 +   36 GCCTATGATGTTTATCCTTTGAATGGTCGCCATGAT
+
+a score=28
+s phiX 4227 28 + 5386 TTCGTGATGAGTTTGTATCTGTTACTGA
+s read    0 28 +   36 TTCGTGATGAGTTTGTATCTGTTACTGA
+
+a score=34
+s phiX 4605 34 + 5386 GATTAGAGGCGTTTTATGATAATCCCAATGCTTT
+s read    0 34 +   36 GATTAGAGGCGTTTTATGATAATCCCAATGCTTT
+
+a score=36
+s phiX 2765 36 + 5386 GGACTGTGTGACTATTGACGTCCTTCCCCGTACGCC
+s read    0 36 -   36 GGACTGTGTGACTATTGACGTCCTTCCCCGTACGCC
+
+a score=34
+s phiX 581 34 + 5386 TTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTG
+s read   0 34 +   36 TTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTG
+
+a score=26
+s phiX 663 26 + 5386 AAACGGCCTGTCTCATCATGGAAGGC
+s read  10 26 -   36 AAACGGCCTGTCTCATCATGGAAGGC
+
+a score=36
+s phiX 1143 36 + 5386 CGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGC
+s read    0 36 -   36 CGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGC
+
+a score=36
+s phiX 1513 36 + 5386 GCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAA
+s read    0 36 +   36 GCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAA
+
+a score=26
+s phiX 4035 26 + 5386 GTATCGAGGCTCTTAAACCTGCTATT
+s read    0 26 +   36 GTATCGAGGCTCTTAAACCTGCTATT
+
+a score=36
+s phiX 1656 36 + 5386 TATTTCTTCATTTGGAGGTAAAACCTCTTATGACGC
+s read    0 36 -   36 TATTTCTTCATTTGGAGGTAAAACCTCTTATGACGC
+
+a score=36
+s phiX 2070 36 + 5386 GTATGTTTCTCCTGCTTATCACCTTCTTGAAGGCTT
+s read    0 36 +   36 GTATGTTTCTCCTGCTTATCACCTTCTTGAAGGCTT
+
+a score=28
+s phiX 1625 36 + 5386 GTGATTACTTCATGCAGCGTTACCATGATGTTATTT
+s read    0 36 +   36 GTGATTACTTCATGCAGCGTTACCGTGATGTTATTT
+
+a score=36
+s phiX 3249 36 + 5386 GCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTG
+s read    0 36 +   36 GCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTG
+
+a score=28
+s phiX 1981 36 + 5386 GAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGAT
+s read    0 36 +   36 GAAATTTCTATGAATGATGTTTTCCGTTCTGGTGAT
+
+a score=36
+s phiX 2216 36 + 5386 AGGTTAAATTTAATGTGACCGTTTATCGCAATCTGC
+s read    0 36 -   36 AGGTTAAATTTAATGTGACCGTTTATCGCAATCTGC
+
+a score=29
+s phiX 3485 29 + 5386 CAGAATACGAAAGACCAGGTATATGCACA
+s read    7 29 -   36 CAGAATACGAAAGACCAGGTATATGCACA
+
+a score=36
+s phiX 1689 36 + 5386 CGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAA
+s read    0 36 -   36 CGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAA
+
+a score=21
+s phiX 3251 29 + 5386 AAGTCTGCCGCTGATAAAGGAAAGGATAC
+s read    7 29 -   36 AAGTCTGCCGATGATAAAGGAAAGGATAC
+
+a score=36
+s phiX 1081 36 + 5386 CTTATTACCATTTCAACTACTCCGGTTATCGCTGGC
+s read    0 36 -   36 CTTATTACCATTTCAACTACTCCGGTTATCGCTGGC
+
+a score=36
+s phiX 4281 36 + 5386 GCTACAATGTGCTCCCCCAACTTGATATTAATAACA
+s read    0 36 -   36 GCTACAATGTGCTCCCCCAACTTGATATTAATAACA
+
+a score=34
+s phiX 4135 34 + 5386 GCTCTTGGAAGAGATTCTGTCTTTTCGTATGCAG
+s read    0 34 +   36 GCTCTTGGAAGAGATTCTGTCTTTTCGTATGCAG
+
+a score=36
+s phiX 4413 36 + 5386 TTAAGGATATTCGCGATGAGTATAATTACCCCAAAA
+s read    0 36 +   36 TTAAGGATATTCGCGATGAGTATAATTACCCCAAAA
+
+a score=36
+s phiX 3987 36 + 5386 GTTCTTATTACCCTTCTGAATGTCACGCTGATTATT
+s read    0 36 -   36 GTTCTTATTACCCTTCTGAATGTCACGCTGATTATT
+
+a score=36
+s phiX 4202 36 + 5386 GACGGCCATAAGGCTGCTTCTGACGTTCGTGATGAG
+s read    0 36 +   36 GACGGCCATAAGGCTGCTTCTGACGTTCGTGATGAG
+
+a score=28
+s phiX 4097 36 + 5386 ATGCTTGGCTTCCATAAGCAGATGGATAACCGCATC
+s read    0 36 -   36 ATGCTTGGCTTCAATAAGCAGATGGATAACCGCATC
+
+a score=35
+s phiX 4306 35 + 5386 TATTAATAACACTATAGACCACCGCCCCGAAGGGG
+s read    0 35 +   36 TATTAATAACACTATAGACCACCGCCCCGAAGGGG
+
+a score=35
+s phiX 1520 35 + 5386 TTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACG
+s read    0 35 +   36 TTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACG
+
+a score=36
+s phiX 944 36 + 5386 TAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGC
+s read   0 36 -   36 TAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGC
+
+a score=36
+s phiX 1574 36 + 5386 ACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGC
+s read    0 36 -   36 ACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGC
+
+a score=36
+s phiX 2688 36 + 5386 GTTCCGACTACCCTCCCGACTGCCTATGATGTTTAT
+s read    0 36 +   36 GTTCCGACTACCCTCCCGACTGCCTATGATGTTTAT
+
+a score=36
+s phiX 2098 36 + 5386 GAAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGT
+s read    0 36 +   36 GAAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGT
+
+a score=36
+s phiX 523 36 + 5386 TACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGC
+s read   0 36 -   36 TACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGC
+
+a score=36
+s phiX 1251 36 + 5386 GTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCC
+s read    0 36 +   36 GTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCC
+
+a score=33
+s phiX 4915 33 + 5386 GCAGGACGCTTTTTCACGTTCTGGTTGGTTGTG
+s read    0 33 +   36 GCAGGACGCTTTTTCACGTTCTGGTTGGTTGTG
+
+a score=29
+s phiX 3827 29 + 5386 GGTATTGATAAAGCTGTTGCCGATACTTG
+s read    0 29 +   36 GGTATTGATAAAGCTGTTGCCGATACTTG
+
+a score=36
+s phiX 3755 36 + 5386 ATTGGCGCTACTGCAAAGGATATTTCTAATGTCGTC
+s read    0 36 -   36 ATTGGCGCTACTGCAAAGGATATTTCTAATGTCGTC
+
+a score=26
+s phiX 663 26 + 5386 AAACGGCCTGTCTCATCATGGAAGGC
+s read  10 26 -   36 AAACGGCCTGTCTCATCATGGAAGGC
+
+a score=36
+s phiX 1115 36 + 5386 GCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCC
+s read    0 36 -   36 GCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCC
+
+a score=28
+s phiX 3098 28 + 5386 CAAGGCTCTAATGTTCCTAACCCTGATG
+s read    0 28 -   36 CAAGGCTCTAATGTTCCTAACCCTGATG
+
+a score=36
+s phiX 3081 36 + 5386 GTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTA
+s read    0 36 -   36 GTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTA
+
+a score=27
+s phiX 4220 27 + 5386 TCTGACGTTCGTGATGAGTTTGTATCT
+s read    0 27 +   36 TCTGACGTTCGTGATGAGTTTGTATCT
+
+a score=36
+s phiX 612 36 + 5386 TTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTC
+s read   0 36 -   36 TTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTC
+
+a score=36
+s phiX 4935 36 + 5386 CTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGC
+s read    0 36 -   36 CTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGC
+
+a score=36
+s phiX 288 36 + 5386 TCACATTTTGTTCATGGTAGAGATTCTCTTGTTGAC
+s read   0 36 +   36 TCACATTTTGTTCATGGTAGAGATTCTCTTGTTGAC
+
+a score=36
+s phiX 4689 36 + 5386 GCAAGGCTAATGATTCACACGCCGACTGCTATCAGT
+s read    0 36 +   36 GCAAGGCTAATGATTCACACGCCGACTGCTATCAGT
+
+a score=23
+s phiX 2546 23 + 5386 TGGTAATGGTGGTTTTCTTCATT
+s read    0 23 +   36 TGGTAATGGTGGTTTTCTTCATT
+
+a score=36
+s phiX 3519 36 + 5386 AGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTC
+s read    0 36 -   36 AGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTC
+
+a score=36
+s phiX 3857 36 + 5386 AACAATTTCTGGAAAGACGGTAAAGCTGATGGTATT
+s read    0 36 -   36 AACAATTTCTGGAAAGACGGTAAAGCTGATGGTATT
+
+a score=36
+s phiX 3343 36 + 5386 TTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAA
+s read    0 36 -   36 TTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAA
+
+a score=27
+s phiX 4671 27 + 5386 TTCTTGCTGCCGAGGGTCGCAAGGCTA
+s read    0 27 +   36 TTCTTGCTGCCGAGGGTCGCAAGGCTA
+
+a score=31
+s phiX 1345 31 + 5386 GATACCAATAAAATCCCTAAGCATTTGTTTC
+s read    0 31 +   36 GATACCAATAAAATCCCTAAGCATTTGTTTC
+
+a score=36
+s phiX 1799 36 + 5386 AGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTC
+s read    0 36 -   36 AGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTC
+
+a score=36
+s phiX 5076 36 + 5386 GGAACAACTCACTAAAAACCAAGCTGTCGCTACTTC
+s read    0 36 +   36 GGAACAACTCACTAAAAACCAAGCTGTCGCTACTTC
+
+a score=35
+s phiX 2762 35 + 5386 CAAGGACTGTGTGACTATTGACGTCCTTCCCCGTA
+s read    1 35 -   36 CAAGGACTGTGTGACTATTGACGTCCTTCCCCGTA
+
+a score=36
+s phiX 4281 36 + 5386 GCTACAATGTGCTCCCCCAACTTGATATTAATAACA
+s read    0 36 +   36 GCTACAATGTGCTCCCCCAACTTGATATTAATAACA
+
+a score=27
+s phiX 4655 27 + 5386 GATATTGGTCGTATGGTTCTTGCTGCC
+s read    0 27 +   36 GATATTGGTCGTATGGTTCTTGCTGCC
+
+a score=18
+s phiX 4934 18 + 5386 TCTGGTTGGTTGTGGCCT
+s read    0 18 +   36 TCTGGTTGGTTGTGGCCT
+
+a score=33
+s phiX 1202 33 + 5386 TTACTTTTTATGTCCCTCATCGTCACGTTTATG
+s read    0 33 +   36 TTACTTTTTATGTCCCTCATCGTCACGTTTATG
+
+a score=36
+s phiX 5106 36 + 5386 TACTTCCCAAGAAGCTGTTCAGAATCAGAATGAGCC
+s read    0 36 -   36 TACTTCCCAAGAAGCTGTTCAGAATCAGAATGAGCC
+
+a score=35
+s phiX 5167 35 + 5386 AATGACAAATCTGTCCACGGAGTGCTTAATCCAAC
+s read    1 35 -   36 AATGACAAATCTGTCCACGGAGTGCTTAATCCAAC
+
+a score=28
+s phiX 2955 36 + 5386 TTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAAT
+s read    0 36 +   36 TTGCTTCTGCTCTTGCTTGTGGCGCCATGTCTAAAT
+
+a score=30
+s phiX 623 30 + 5386 GCTGCCGTCATTGCTTATTATGTTCATCCC
+s read   0 30 +   36 GCTGCCGTCATTGCTTATTATGTTCATCCC
+
+a score=35
+s phiX 1876 35 + 5386 CCGCCTACTGCGACTAAAGAGATTCAGTACCTTAA
+s read    1 35 -   36 CCGCCTACTGCGACTAAAGAGATTCAGTACCTTAA
+
+a score=36
+s phiX 1213 36 + 5386 GTCCCTCATCGTCACGTTTATGGTGAACAGTGGATT
+s read    0 36 +   36 GTCCCTCATCGTCACGTTTATGGTGAACAGTGGATT
+
+a score=27
+s phiX 557 27 + 5386 GCTTGCGTTTATGGTACGCTGGACTTT
+s read   0 27 +   36 GCTTGCGTTTATGGTACGCTGGACTTT
+
+a score=36
+s phiX 3628 36 + 5386 TACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAA
+s read    0 36 -   36 TACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAA
+
+a score=35
+s phiX 2253 35 + 5386 GACCACTCGCGATTCAATCATGACTTCGTGATAAA
+s read    0 35 +   36 GACCACTCGCGATTCAATCATGACTTCGTGATAAA
+
+a score=36
+s phiX 2478 36 + 5386 GCACCTGTTTTACAGACACCTAAAGCTACATCGTCA
+s read    0 36 +   36 GCACCTGTTTTACAGACACCTAAAGCTACATCGTCA
+
+a score=36
+s phiX 3000 36 + 5386 GCGGTCAAAAAGCCGCCTCCGGTGGCATTCAAGGTG
+s read    0 36 +   36 GCGGTCAAAAAGCCGCCTCCGGTGGCATTCAAGGTG
+
+a score=35
+s phiX 4666 35 + 5386 TATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAATG
+s read    0 35 +   36 TATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAATG
+
+a score=36
+s phiX 3463 36 + 5386 CATTCAGTCGGCGACTTCACGCCAGAATACGAAAGA
+s read    0 36 -   36 CATTCAGTCGGCGACTTCACGCCAGAATACGAAAGA
+
+a score=35
+s phiX 4910 35 + 5386 TACACGCAGGACGCTTTTTCACGTTCTGGTTGGTT
+s read    0 35 +   36 TACACGCAGGACGCTTTTTCACGTTCTGGTTGGTT
+
+a score=29
+s phiX 4591 29 + 5386 GTTGGCTGACGACCGATTAGAGGCGTTTT
+s read    0 29 +   36 GTTGGCTGACGACCGATTAGAGGCGTTTT
+
+a score=28
+s phiX 2221 36 + 5386 AAATTTAATGTGACCGTTTATCGCAATCTGCCGACC
+s read    0 36 -   36 AAATTTAATGTGAACGTTTATCGCAATCTGCCGACC
+
+a score=35
+s phiX 645 35 + 5386 TTCATCCCGTCAACATTCAAACGGCCTGTCTCATC
+s read   0 35 +   36 TTCATCCCGTCAACATTCAAACGGCCTGTCTCATC
+
+a score=36
+s phiX 1363 36 + 5386 AAGCATTTGTTTCAGGGTTATTTGAATATCTATAAC
+s read    0 36 -   36 AAGCATTTGTTTCAGGGTTATTTGAATATCTATAAC
+
+a score=35
+s phiX 1612 35 + 5386 ACTGACCAAGAACGTGATTACTTCATGCAGCGTTA
+s read    1 35 -   36 ACTGACCAAGAACGTGATTACTTCATGCAGCGTTA
+
+a score=35
+s phiX 1044 35 + 5386 TTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTC
+s read    0 35 +   36 TTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTC
+
+a score=25
+s phiX 2884 33 + 5386 TTATTAAAGAGATTATTTGTCTCCAGCCACTTA
+s read    0 33 +   36 TTATTAAAGAGATTATTTTTCTCCAGCCACTTA
+
+a score=36
+s phiX 1587 36 + 5386 GCAAGCTGCTTATGCTAATTTGCATACTGACCAAGA
+s read    0 36 +   36 GCAAGCTGCTTATGCTAATTTGCATACTGACCAAGA
+
+a score=36
+s phiX 338 36 + 5386 TGGATTACTATCTGAGTCCGATGCTGTTCAACCACT
+s read   0 36 +   36 TGGATTACTATCTGAGTCCGATGCTGTTCAACCACT
+
+a score=36
+s phiX 4936 36 + 5386 TGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCC
+s read    0 36 +   36 TGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCC
+
+a score=34
+s phiX 4343 34 + 5386 GAAAAATGGTTTTTAGAGAACGAGAAGACGGTTA
+s read    2 34 -   36 GAAAAATGGTTTTTAGAGAACGAGAAGACGGTTA
+
+a score=36
+s phiX 3673 36 + 5386 CAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA
+s read    0 36 -   36 CAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA
+
+a score=36
+s phiX 4944 36 + 5386 TGTGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAAG
+s read    0 36 +   36 TGTGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAAG
+
+a score=36
+s phiX 1945 36 + 5386 GGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGT
+s read    0 36 +   36 GGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGT
+
+a score=32
+s phiX 2661 32 + 5386 TGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCC
+s read    0 32 +   36 TGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCC
+
+a score=36
+s phiX 3312 36 + 5386 TTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCT
+s read    0 36 +   36 TTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCT
+
+a score=25
+s phiX 2826 33 + 5386 ATGGTTTGGTCTAACTTTACCGCTACTAAATGC
+s read    3 33 -   36 ATGGTTTGGTCAAACTTTACCGCTACTAAATGC
+
+a score=36
+s phiX 726 36 + 5386 GTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCT
+s read   0 36 +   36 GTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCT
+
+a score=36
+s phiX 554 36 + 5386 GAGGCTTGCGTTTATGGTACGCTGGACTTTGTGGGA
+s read   0 36 -   36 GAGGCTTGCGTTTATGGTACGCTGGACTTTGTGGGA
+
+a score=36
+s phiX 484 36 + 5386 TGATTTCGATTTTCTGACGAGTAACAAAGTTTGGAT
+s read   0 36 +   36 TGATTTCGATTTTCTGACGAGTAACAAAGTTTGGAT
+
+a score=36
+s phiX 317 36 + 5386 TGTTGACATTTTAAAAGAGCGTGGATTACTATCTGA
+s read   0 36 -   36 TGTTGACATTTTAAAAGAGCGTGGATTACTATCTGA
+
+a score=36
+s phiX 909 36 + 5386 TAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGT
+s read   0 36 +   36 TAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGT
+
+a score=36
+s phiX 4935 36 + 5386 CTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGC
+s read    0 36 -   36 CTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGC
+
+a score=36
+s phiX 5004 36 + 5386 TCTATGTGGCTAAATACGTTAACAAAAAGTCAGATA
+s read    0 36 -   36 TCTATGTGGCTAAATACGTTAACAAAAAGTCAGATA
+
+a score=33
+s phiX 1378 33 + 5386 GGTTATTTGAATATCTATAACAACTATTTTAAA
+s read    0 33 +   36 GGTTATTTGAATATCTATAACAACTATTTTAAA
+
+a score=30
+s phiX 3167 30 + 5386 GGTAAAGGACTTCTTGAAGGTACGTTGCAG
+s read    0 30 +   36 GGTAAAGGACTTCTTGAAGGTACGTTGCAG
+
+a score=33
+s phiX 2737 33 + 5386 GCCATGATGGTGGTTATTATACCGTCAAGGACT
+s read    0 33 +   36 GCCATGATGGTGGTTATTATACCGTCAAGGACT
+
+a score=36
+s phiX 4098 36 + 5386 TGCTTGGCTTCCATAAGCAGATGGATAACCGCATCA
+s read    0 36 +   36 TGCTTGGCTTCCATAAGCAGATGGATAACCGCATCA
+
+a score=36
+s phiX 2573 36 + 5386 TCAGATGGATACATCTGTCAACGCCGCTAATCAGGT
+s read    0 36 +   36 TCAGATGGATACATCTGTCAACGCCGCTAATCAGGT
+
+a score=36
+s phiX 2452 36 + 5386 TCACTTCTGTTACTCCAGCTTCTTCGGCACCTGTTT
+s read    0 36 +   36 TCACTTCTGTTACTCCAGCTTCTTCGGCACCTGTTT
+
+a score=36
+s phiX 5178 36 + 5386 TGTCCACGGAGTGCTTAATCCAACTTACCAAGCTGG
+s read    0 36 +   36 TGTCCACGGAGTGCTTAATCCAACTTACCAAGCTGG
+
+a score=30
+s phiX 3777 30 + 5386 TTTCTAATGTCGTCACTGATGCTGCTTCTG
+s read    0 30 +   36 TTTCTAATGTCGTCACTGATGCTGCTTCTG
+
+a score=36
+s phiX 1842 36 + 5386 TGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCC
+s read    0 36 -   36 TGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCC
+
+a score=36
+s phiX 1081 36 + 5386 CTTATTACCATTTCAACTACTCCGGTTATCGCTGGC
+s read    0 36 -   36 CTTATTACCATTTCAACTACTCCGGTTATCGCTGGC
+
+a score=36
+s phiX 1727 36 + 5386 TCTGGGCATCTGGCTATGATGTTGATGGAACTGACC
+s read    0 36 -   36 TCTGGGCATCTGGCTATGATGTTGATGGAACTGACC
+
+a score=28
+s phiX 4636 36 + 5386 TTTGCGTGACTATTTTCGTGATATTGGTCGTATGGT
+s read    0 36 +   36 TTTGCGTGACTATTTTCGTGATATTGTTCGTATGGT
+
+a score=36
+s phiX 2224 36 + 5386 TTTAATGTGACCGTTTATCGCAATCTGCCGACCACT
+s read    0 36 +   36 TTTAATGTGACCGTTTATCGCAATCTGCCGACCACT
+
+a score=36
+s phiX 3367 36 + 5386 CGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCA
+s read    0 36 -   36 CGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCA
+
+a score=36
+s phiX 3310 36 + 5386 GCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTC
+s read    0 36 +   36 GCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTC
+
+a score=36
+s phiX 5038 36 + 5386 TATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGA
+s read    0 36 -   36 TATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGA
+
+a score=36
+s phiX 2058 36 + 5386 TTATGCGCCTTCGTATGTTTCTCCTGCTTATCACCT
+s read    0 36 +   36 TTATGCGCCTTCGTATGTTTCTCCTGCTTATCACCT
+
+a score=36
+s phiX 387 36 + 5386 TCATGAGTCAAGTTACTGAACAATCCGTACGTTTCC
+s read   0 36 +   36 TCATGAGTCAAGTTACTGAACAATCCGTACGTTTCC
+
+a score=36
+s phiX 2753 36 + 5386 TTATACCGTCAAGGACTGTGTGACTATTGACGTCCT
+s read    0 36 +   36 TTATACCGTCAAGGACTGTGTGACTATTGACGTCCT
+
+a score=36
+s phiX 2127 36 + 5386 TTCTGGTGATTTGCAAGAACGCGTACTTATTCGCCA
+s read    0 36 -   36 TTCTGGTGATTTGCAAGAACGCGTACTTATTCGCCA
+
+a score=36
+s phiX 153 36 + 5386 TTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTT
+s read   0 36 +   36 TTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTT
+
+a score=36
+s phiX 3616 36 + 5386 GCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCA
+s read    0 36 -   36 GCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCA
+
+a score=36
+s phiX 2727 36 + 5386 TTGAATGGTCGCCATGATGGTGGTTATTATACCGTC
+s read    0 36 -   36 TTGAATGGTCGCCATGATGGTGGTTATTATACCGTC
+
+a score=36
+s phiX 2774 36 + 5386 GACTATTGACGTCCTTCCCCGTACGCCGGGCAATAA
+s read    0 36 -   36 GACTATTGACGTCCTTCCCCGTACGCCGGGCAATAA
+
+a score=36
+s phiX 4216 36 + 5386 TGCTTCTGACGTTCGTGATGAGTTTGTATCTGTTAC
+s read    0 36 +   36 TGCTTCTGACGTTCGTGATGAGTTTGTATCTGTTAC
+
+a score=35
+s phiX 4618 35 + 5386 TTATGATAATCCCAATGCTTTGCGTGACTATTTTC
+s read    0 35 +   36 TTATGATAATCCCAATGCTTTGCGTGACTATTTTC
+
+a score=35
+s phiX 410 35 + 5386 TCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAA
+s read   0 35 +   36 TCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAA
+
+a score=35
+s phiX 2729 35 + 5386 GAATGGTCGCCATGATGGTGGTTATTATACCGTCA
+s read    0 35 +   36 GAATGGTCGCCATGATGGTGGTTATTATACCGTCA
+
+a score=35
+s phiX 520 35 + 5386 TGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTG
+s read   0 35 +   36 TGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTG
+
+a score=36
+s phiX 4259 36 + 5386 TTAATGGATGAATTGGCACAATGCTACAATGTGCTC
+s read    0 36 +   36 TTAATGGATGAATTGGCACAATGCTACAATGTGCTC
+
+a score=36
+s phiX 1661 36 + 5386 CTTCATTTGGAGGTAAAACCTCTTATGACGCTGACA
+s read    0 36 -   36 CTTCATTTGGAGGTAAAACCTCTTATGACGCTGACA
+
+a score=36
+s phiX 532 36 + 5386 CTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTA
+s read   0 36 -   36 CTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTA
+
+a score=35
+s phiX 194 35 + 5386 TCAACTAACGATTCTGTCAAAAACTGACGCGTTGG
+s read   0 35 +   36 TCAACTAACGATTCTGTCAAAAACTGACGCGTTGG
+
+a score=36
+s phiX 2238 36 + 5386 TTATCGCAATCTGCCGACCACTCGCGATTCAATCAT
+s read    0 36 +   36 TTATCGCAATCTGCCGACCACTCGCGATTCAATCAT
+
+a score=33
+s phiX 1312 33 + 5386 GACCATGCCGCTTTTCTTGGCACGATTAACCCT
+s read    0 33 +   36 GACCATGCCGCTTTTCTTGGCACGATTAACCCT
+
+a score=36
+s phiX 1544 36 + 5386 GCCAAATGACGACTTCTACCACATCTATTGACATTA
+s read    0 36 -   36 GCCAAATGACGACTTCTACCACATCTATTGACATTA
+
+a score=36
+s phiX 556 36 + 5386 GGCTTGCGTTTATGGTACGCTGGACTTTGTGGGATA
+s read   0 36 -   36 GGCTTGCGTTTATGGTACGCTGGACTTTGTGGGATA
+
+a score=36
+s phiX 1248 36 + 5386 TAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCT
+s read    0 36 +   36 TAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCT
+
+a score=33
+s phiX 4173 33 + 5386 TTGAGTTCGATAATGGTGATATGTATGTTGACG
+s read    0 33 +   36 TTGAGTTCGATAATGGTGATATGTATGTTGACG
+
+a score=35
+s phiX 613 35 + 5386 TGAGTTTATTGCTGCCGTCATTGCTTATTATGTTC
+s read   0 35 +   36 TGAGTTTATTGCTGCCGTCATTGCTTATTATGTTC
+
+a score=36
+s phiX 205 36 + 5386 TTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGT
+s read   0 36 +   36 TTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGT
+
+a score=36
+s phiX 4980 36 + 5386 CTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTA
+s read    0 36 -   36 CTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTA
+
+a score=30
+s phiX 1701 30 + 5386 TCCTTTACTTGTCATGCGCTCTAATCTCTG
+s read    0 30 +   36 TCCTTTACTTGTCATGCGCTCTAATCTCTG
+
+a score=35
+s phiX 2320 35 + 5386 TAAAAATTTTAATTTTTGCCGCTGAGGGGTTGACC
+s read    0 35 +   36 TAAAAATTTTAATTTTTGCCGCTGAGGGGTTGACC
+
+a score=19
+s phiX 4183 19 + 5386 TAATGGTGATATGTATGTT
+s read    0 19 +   36 TAATGGTGATATGTATGTT
+
+a score=35
+s phiX 4087 35 + 5386 TCAATCCCCAATGCTTGGCTTCCATAAGCAGATGG
+s read    0 35 +   36 TCAATCCCCAATGCTTGGCTTCCATAAGCAGATGG
+
+a score=36
+s phiX 899 36 + 5386 TGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTC
+s read   0 36 +   36 TGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTC
+
+a score=36
+s phiX 1154 36 + 5386 TTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTA
+s read    0 36 -   36 TTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTA
+
+a score=36
+s phiX 3586 36 + 5386 TTCCAAGCAACAGCAGGTTTCCGAGATTATGCGCCA
+s read    0 36 -   36 TTCCAAGCAACAGCAGGTTTCCGAGATTATGCGCCA
+
+a score=36
+s phiX 3786 36 + 5386 TCGTCACTGATGCTGCTTCTGGTGTGGTTGATATTT
+s read    0 36 -   36 TCGTCACTGATGCTGCTTCTGGTGTGGTTGATATTT
+
+a score=35
+s phiX 3833 35 + 5386 GATAAAGCTGTTGCCGATACTTGGAACAATTTCTG
+s read    0 35 +   36 GATAAAGCTGTTGCCGATACTTGGAACAATTTCTG
+
+a score=36
+s phiX 988 36 + 5386 TGAGGATAAATTATGTCTAATATTCAAACTGGCGCC
+s read   0 36 +   36 TGAGGATAAATTATGTCTAATATTCAAACTGGCGCC
+
+a score=29
+s phiX 5357 29 + 5386 ATAAAAATGATTGGCGTATCCAACCTGCA
+s read    0 29 +   36 ATAAAAATGATTGGCGTATCCAACCTGCA
+
+a score=36
+s phiX 3711 36 + 5386 TAGTTCATCAGCAAACGCAGAATCAGCGGTATGGCT
+s read    0 36 +   36 TAGTTCATCAGCAAACGCAGAATCAGCGGTATGGCT
+
+a score=36
+s phiX 1206 36 + 5386 TTTTTATGTCCCTCATCGTCACGTTTATGGTGAACA
+s read    0 36 +   36 TTTTTATGTCCCTCATCGTCACGTTTATGGTGAACA
+
+a score=21
+s phiX 4299 21 + 5386 AACTTGATATTAATAACACTA
+s read   15 21 -   36 AACTTGATATTAATAACACTA
+
+a score=36
+s phiX 2115 36 + 5386 TCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGT
+s read    0 36 +   36 TCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGT
+
+a score=36
+s phiX 659 36 + 5386 ATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAA
+s read   0 36 -   36 ATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAA
+
+a score=31
+s phiX 1806 31 + 5386 TAAACATTCTGTGCCGCGTTTCTTTGTTCCT
+s read    0 31 +   36 TAAACATTCTGTGCCGCGTTTCTTTGTTCCT
+
+a score=36
+s phiX 1535 36 + 5386 AGCTTTCTCGCCAAATGACGACTTCTACCACATCTA
+s read    0 36 -   36 AGCTTTCTCGCCAAATGACGACTTCTACCACATCTA
+
+a score=35
+s phiX 2111 35 + 5386 TCATTCAGGAACCGCCTTCTGGTGATTTGCAAGAA
+s read    1 35 -   36 TCATTCAGGAACCGCCTTCTGGTGATTTGCAAGAA
+
+a score=36
+s phiX 2815 36 + 5386 ATGTTGGTTTCATGGTTTGGTCTAACTTTACCGCTA
+s read    0 36 -   36 ATGTTGGTTTCATGGTTTGGTCTAACTTTACCGCTA
+
+a score=36
+s phiX 5175 36 + 5386 ATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGC
+s read    0 36 +   36 ATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGC
+
+a score=36
+s phiX 3471 36 + 5386 CGGCGACTTCACGCCAGAATACGAAAGACCAGGTAT
+s read    0 36 -   36 CGGCGACTTCACGCCAGAATACGAAAGACCAGGTAT
+
+a score=36
+s phiX 1947 36 + 5386 CGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGA
+s read    0 36 -   36 CGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGA
+
+a score=35
+s phiX 2211 35 + 5386 TAGTCAGGTTAAATTTAATGTGACCGTTTATCGCA
+s read    0 35 +   36 TAGTCAGGTTAAATTTAATGTGACCGTTTATCGCA
+
+a score=35
+s phiX 3816 35 + 5386 ATATTTTTCATGGTATTGATAAAGCTGTTGCCGAT
+s read    0 35 +   36 ATATTTTTCATGGTATTGATAAAGCTGTTGCCGAT
+
+a score=36
+s phiX 3562 36 + 5386 GTCTATTATGGAAAACACCAATCTTTCCAAGCAACA
+s read    0 36 -   36 GTCTATTATGGAAAACACCAATCTTTCCAAGCAACA
+
+a score=35
+s phiX 4197 35 + 5386 ATGTTGACGGCCATAAGGCTGCTTCTGACGTTCGT
+s read    1 35 -   36 ATGTTGACGGCCATAAGGCTGCTTCTGACGTTCGT
+
+a score=35
+s phiX 2906 35 + 5386 CCAGCCACTTAAGTGAGGTGATTTATGTTTGGTGC
+s read    1 35 -   36 CCAGCCACTTAAGTGAGGTGATTTATGTTTGGTGC
+
+a score=35
+s phiX 2842 35 + 5386 TTACCGCTACTAAATGCCGCGGATTGGTTTCGCTG
+s read    0 35 +   36 TTACCGCTACTAAATGCCGCGGATTGGTTTCGCTG
+
+a score=31
+s phiX 4373 31 + 5386 GTTACGCAGTTTTGCCGCAAGCTGGCTGCTG
+s read    0 31 +   36 GTTACGCAGTTTTGCCGCAAGCTGGCTGCTG
+
+a score=16
+s phiX 431 16 + 5386 TTGGCCTCTATTAAGC
+s read  10 16 -   36 TTGGCCTCTATTAAGC
+
+a score=35
+s phiX 1939 35 + 5386 ATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCC
+s read    1 35 -   36 ATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCC
+
+a score=36
+s phiX 5072 36 + 5386 GAATGGAACAACTCACTAAAAACCAAGCTGTCGCTA
+s read    0 36 -   36 GAATGGAACAACTCACTAAAAACCAAGCTGTCGCTA
+
+a score=36
+s phiX 4433 36 + 5386 TATAATTACCCCAAAAAGAAAGGTATTAAGGATGAG
+s read    0 36 +   36 TATAATTACCCCAAAAAGAAAGGTATTAAGGATGAG
+
+a score=35
+s phiX 1273 35 + 5386 GCCACTCCTCTCCCGACTGTTAACACTACTGGTTA
+s read    1 35 -   36 GCCACTCCTCTCCCGACTGTTAACACTACTGGTTA
+
+a score=36
+s phiX 4439 36 + 5386 TACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCA
+s read    0 36 +   36 TACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCA
+
+a score=36
+s phiX 3919 36 + 5386 GTCAGGATTGACACCCTCCCAATTGTATGTTTTCAT
+s read    0 36 +   36 GTCAGGATTGACACCCTCCCAATTGTATGTTTTCAT
+
+a score=35
+s phiX 4586 35 + 5386 CTCACGTTGGCTGACGACCGATTAGAGGCGTTTTA
+s read    1 35 -   36 CTCACGTTGGCTGACGACCGATTAGAGGCGTTTTA
+
+a score=24
+s phiX 3729 24 + 5386 AGAATCAGCGGTATGGCTCTTCTC
+s read    0 24 +   36 AGAATCAGCGGTATGGCTCTTCTC
+
+a score=36
+s phiX 1706 36 + 5386 TACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCT
+s read    0 36 +   36 TACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCT
+
+a score=36
+s phiX 1581 36 + 5386 GGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGA
+s read    0 36 -   36 GGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGA
+
+a score=36
+s phiX 1587 36 + 5386 GCAAGCTGCTTATGCTAATTTGCATACTGACCAAGA
+s read    0 36 -   36 GCAAGCTGCTTATGCTAATTTGCATACTGACCAAGA
+
+a score=34
+s phiX 1179 34 + 5386 TATTGACTCTACTGTAGACATTTTTACTTTTTAT
+s read    0 34 +   36 TATTGACTCTACTGTAGACATTTTTACTTTTTAT
+
+a score=36
+s phiX 2697 36 + 5386 ACCCTCCCGACTGCCTATGATGTTTATCCTTTGAAT
+s read    0 36 -   36 ACCCTCCCGACTGCCTATGATGTTTATCCTTTGAAT
+
+a score=36
+s phiX 3166 36 + 5386 TGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG
+s read    0 36 +   36 TGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG
+
+a score=25
+s phiX 2497 25 + 5386 CTAAAGCTACATCGTCAACGTTATA
+s read   11 25 -   36 CTAAAGCTACATCGTCAACGTTATA
+
+a score=36
+s phiX 2288 36 + 5386 AGATTGAGTGTGAGGTTATAACGCCGAAGCGGTAAA
+s read    0 36 -   36 AGATTGAGTGTGAGGTTATAACGCCGAAGCGGTAAA
+
+a score=36
+s phiX 440 36 + 5386 ATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTA
+s read   0 36 -   36 ATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTA
+
+a score=36
+s phiX 1011 36 + 5386 TCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTC
+s read    0 36 +   36 TCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTC
+
+a score=36
+s phiX 160 36 + 5386 GCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATC
+s read   0 36 +   36 GCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATC
+
+a score=35
+s phiX 1164 35 + 5386 GCGTCGTGGCCTTGCTATTGACTCTACTGTAGACA
+s read    1 35 -   36 GCGTCGTGGCCTTGCTATTGACTCTACTGTAGACA
+
+a score=31
+s phiX 5014 31 + 5386 TAAATACGTTAACAAAAAGTCAGATATGGAC
+s read    5 31 -   36 TAAATACGTTAACAAAAAGTCAGATATGGAC
+
+a score=36
+s phiX 2285 36 + 5386 AAAAGATTGAGTGTGAGGTTATAACGCCGAAGCGGT
+s read    0 36 -   36 AAAAGATTGAGTGTGAGGTTATAACGCCGAAGCGGT
+
+a score=32
+s phiX 800 32 + 5386 GCAGAAGAAAACGTGCGTCAAAAATTACGTGC
+s read   0 32 -   36 GCAGAAGAAAACGTGCGTCAAAAATTACGTGC
+
+a score=36
+s phiX 1586 36 + 5386 TGCAAGCTGCTTATGCTAATTTGCATACTGACCAAG
+s read    0 36 +   36 TGCAAGCTGCTTATGCTAATTTGCATACTGACCAAG
+
+a score=36
+s phiX 4577 36 + 5386 TTTGACACTCTCACGTTGGCTGACGACCGATTAGAG
+s read    0 36 +   36 TTTGACACTCTCACGTTGGCTGACGACCGATTAGAG
+
+a score=36
+s phiX 3569 36 + 5386 ATGGAAAACACCAATCTTTCCAAGCAACAGCAGGTT
+s read    0 36 -   36 ATGGAAAACACCAATCTTTCCAAGCAACAGCAGGTT
+
+a score=36
+s phiX 495 36 + 5386 TTCTGACGAGTAACAAAGTTTGGATTGCTACTGACC
+s read   0 36 -   36 TTCTGACGAGTAACAAAGTTTGGATTGCTACTGACC
+
+a score=36
+s phiX 440 36 + 5386 ATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTA
+s read   0 36 +   36 ATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTA
+
+a score=30
+s phiX 4753 30 + 5386 TAATGGCCGTCTTCATTTCCATGCGGTGCA
+s read    0 30 -   36 TAATGGCCGTCTTCATTTCCATGCGGTGCA
+
+a score=35
+s phiX 4234 35 + 5386 TGAGTTTGTATCTGTTACTGAGAAGTTAATGGATG
+s read    0 35 +   36 TGAGTTTGTATCTGTTACTGAGAAGTTAATGGATG
+
+a score=36
+s phiX 2292 36 + 5386 TGAGTGTGAGGTTATAACGCCGAAGCGGTAAAAATT
+s read    0 36 -   36 TGAGTGTGAGGTTATAACGCCGAAGCGGTAAAAATT
+
+a score=35
+s phiX 1578 35 + 5386 TATGGGTCTGCAAGCTGCTTATGCTAATTTGCATA
+s read    1 35 -   36 TATGGGTCTGCAAGCTGCTTATGCTAATTTGCATA
+
+a score=31
+s phiX 3331 31 + 5386 TGGTGCTGATGCTTCCTCTGCTGGTATGGTT
+s read    0 31 +   36 TGGTGCTGATGCTTCCTCTGCTGGTATGGTT
+
+a score=36
+s phiX 4131 36 + 5386 TCAAGCTCTTGGAAGAGATTCTGTCTTTTCGTATGC
+s read    0 36 +   36 TCAAGCTCTTGGAAGAGATTCTGTCTTTTCGTATGC
+
+a score=28
+s phiX 4774 36 + 5386 TGCGGTGCACTTTATGCGGACACTTCCTACAGGTAG
+s read    0 36 +   36 TGCGGTGCATTTTATGCGGACACTTCCTACAGGTAG
+
+a score=16
+s phiX 650 24 + 5386 CCCGTCAACATTCAAACGGCCTGT
+s read  12 24 -   36 CCCGTAAACATTCAAACGGCCTGT
+
+a score=32
+s phiX 0 32 + 5386 GAGTTTTATCGCTTCCATGACGCAGAAGTTAA
+s read 4 32 -   36 GAGTTTTATCGCTTCCATGACGCAGAAGTTAA
+
+a score=36
+s phiX 53 36 + 5386 AGTCGAAAAATTATCTTGATAAAGCAGGAATTACTA
+s read  0 36 -   36 AGTCGAAAAATTATCTTGATAAAGCAGGAATTACTA
+
+a score=35
+s phiX 679 35 + 5386 CATGGAAGGCGCTGAATTTACGGAAAACATTATTA
+s read   1 35 -   36 CATGGAAGGCGCTGAATTTACGGAAAACATTATTA
+
+a score=36
+s phiX 230 36 + 5386 TGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGT
+s read   0 36 +   36 TGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGT
+
+a score=36
+s phiX 4191 36 + 5386 ATATGTATGTTGACGGCCATAAGGCTGCTTCTGACG
+s read    0 36 +   36 ATATGTATGTTGACGGCCATAAGGCTGCTTCTGACG
+
+a score=36
+s phiX 1579 36 + 5386 ATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACT
+s read    0 36 -   36 ATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACT
+
+a score=36
+s phiX 610 36 + 5386 TGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGT
+s read   0 36 -   36 TGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGT
+
+a score=35
+s phiX 4531 35 + 5386 GATGAATGCAATGCGACAGGCTCATGCTGATGGTT
+s read    1 35 -   36 GATGAATGCAATGCGACAGGCTCATGCTGATGGTT
+
+a score=30
+s phiX 637 30 + 5386 TTATTATGTTCATCCCGTCAACATTCAAAC
+s read   0 30 +   36 TTATTATGTTCATCCCGTCAACATTCAAAC
+
+a score=20
+s phiX 2846 28 + 5386 CGCTACTAAATGCCGCGGATTGGTTTCG
+s read    4 28 +   36 CGCTACTAAATTCCGCGGATTGGTTTCG
+
+a score=36
+s phiX 1956 36 + 5386 TTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTAT
+s read    0 36 -   36 TTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTAT
+
+a score=36
+s phiX 2727 36 + 5386 TTGAATGGTCGCCATGATGGTGGTTATTATACCGTC
+s read    0 36 -   36 TTGAATGGTCGCCATGATGGTGGTTATTATACCGTC
+
+a score=36
+s phiX 3978 36 + 5386 TTATGGTTCGTTCTTATTACCCTTCTGAATGTCACG
+s read    0 36 +   36 TTATGGTTCGTTCTTATTACCCTTCTGAATGTCACG
+
+a score=35
+s phiX 539 35 + 5386 GCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGTAC
+s read   1 35 -   36 GCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGTAC
+
+a score=36
+s phiX 1851 36 + 5386 GTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGC
+s read    0 36 -   36 GTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGC
+
+a score=36
+s phiX 4683 36 + 5386 AGGGTCGCAAGGCTAATGATTCACACGCCGACTGCT
+s read    0 36 -   36 AGGGTCGCAAGGCTAATGATTCACACGCCGACTGCT
+
+a score=32
+s phiX 3689 32 + 5386 AAGGTTAGTGCTGAGGTTGACTTAGTTCATCA
+s read    0 32 +   36 AAGGTTAGTGCTGAGGTTGACTTAGTTCATCA
+
+a score=36
+s phiX 583 36 + 5386 TGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTT
+s read   0 36 +   36 TGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTT
+
+a score=35
+s phiX 3851 35 + 5386 ACTTGGAACAATTTCTGGAAAGACGGTAAAGCTGA
+s read    1 35 -   36 ACTTGGAACAATTTCTGGAAAGACGGTAAAGCTGA
+
+a score=35
+s phiX 2856 35 + 5386 TGCCGCGGATTGGTTTCGCTGAATCAGGTTATTAA
+s read    0 35 +   36 TGCCGCGGATTGGTTTCGCTGAATCAGGTTATTAA
+
+a score=26
+s phiX 3781 26 + 5386 TAATGTCGTCACTGATGCTGCTTCTG
+s read    0 26 +   36 TAATGTCGTCACTGATGCTGCTTCTG
+
+a score=36
+s phiX 1727 36 + 5386 TCTGGGCATCTGGCTATGATGTTGATGGAACTGACC
+s read    0 36 +   36 TCTGGGCATCTGGCTATGATGTTGATGGAACTGACC
+
+a score=35
+s phiX 4657 35 + 5386 TATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCA
+s read    0 35 +   36 TATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCA
+
+a score=36
+s phiX 1720 36 + 5386 TCTAATCTCTGGGCATCTGGCTATGATGTTGATGGA
+s read    0 36 -   36 TCTAATCTCTGGGCATCTGGCTATGATGTTGATGGA
+
+a score=36
+s phiX 1953 36 + 5386 TGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTC
+s read    0 36 +   36 TGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTC
+
+a score=36
+s phiX 961 36 + 5386 TAATTGCAGGGGCTTCGGCCCCTTACTTGAGGATAA
+s read   0 36 +   36 TAATTGCAGGGGCTTCGGCCCCTTACTTGAGGATAA
+
+a score=36
+s phiX 2174 36 + 5386 ACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGA
+s read    0 36 -   36 ACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGA
+
+a score=36
+s phiX 2441 36 + 5386 TAAGCTGGTTCTCACTTCTGTTACTCCAGCTTCTTC
+s read    0 36 +   36 TAAGCTGGTTCTCACTTCTGTTACTCCAGCTTCTTC
+
+a score=35
+s phiX 5125 35 + 5386 CAGAATCAGAATGAGCCGCAACTTCGGGATGAAAA
+s read    1 35 -   36 CAGAATCAGAATGAGCCGCAACTTCGGGATGAAAA
+
+a score=36
+s phiX 5205 36 + 5386 CCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGA
+s read    0 36 -   36 CCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGA
+
+a score=36
+s phiX 2878 36 + 5386 ATCAGGTTATTAAAGAGATTATTTGTCTCCAGCCAC
+s read    0 36 +   36 ATCAGGTTATTAAAGAGATTATTTGTCTCCAGCCAC
+
+a score=36
+s phiX 2003 36 + 5386 TCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTG
+s read    0 36 +   36 TCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTG
+
+a score=36
+s phiX 2153 36 + 5386 TTATTCGCCACCATGATTATGACCAGTGTTTCCAGT
+s read    0 36 +   36 TTATTCGCCACCATGATTATGACCAGTGTTTCCAGT
+
+a score=35
+s phiX 1092 35 + 5386 TTCAACTACTCCGGTTATCGCTGGCGACTCCTTCG
+s read    0 35 +   36 TTCAACTACTCCGGTTATCGCTGGCGACTCCTTCG
+
+a score=36
+s phiX 3126 36 + 5386 AGGCCGCCCCTAGTTTTGTTTCTGGTGCTATGGCTA
+s read    0 36 -   36 AGGCCGCCCCTAGTTTTGTTTCTGGTGCTATGGCTA
+
+a score=36
+s phiX 3543 36 + 5386 AGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACA
+s read    0 36 -   36 AGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACA
+
+a score=31
+s phiX 2507 31 + 5386 ATCGTCAACGTTATATTTTGATAGTTTGACG
+s read    0 31 +   36 ATCGTCAACGTTATATTTTGATAGTTTGACG
+
+a score=16
+s phiX 3097 24 + 5386 TCAAGGCTCTAATGTTCCTAACCC
+s read   12 24 -   36 TCAAGGCTCTAATGTCCCTAACCC
+
+a score=36
+s phiX 3599 36 + 5386 CAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAA
+s read    0 36 -   36 CAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAA
+
+a score=36
+s phiX 1733 36 + 5386 CATCTGGCTATGATGTTGATGGAACTGACCAAACGT
+s read    0 36 -   36 CATCTGGCTATGATGTTGATGGAACTGACCAAACGT
+
+a score=33
+s phiX 2654 33 + 5386 TTTTGCCTGTTTGGTTCGCTTTGAGTCTTCTTC
+s read    0 33 +   36 TTTTGCCTGTTTGGTTCGCTTTGAGTCTTCTTC
+
+a score=36
+s phiX 2933 36 + 5386 TTTGGTGCTATTGCTGGCGGTATTGCTTCTGCTCTT
+s read    0 36 -   36 TTTGGTGCTATTGCTGGCGGTATTGCTTCTGCTCTT
+
+a score=36
+s phiX 1521 36 + 5386 TCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGAC
+s read    0 36 +   36 TCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGAC
+
+a score=36
+s phiX 4062 36 + 5386 AGGCTTGTGGCATTTCTACTCTTTCTCAATCCCCAA
+s read    0 36 -   36 AGGCTTGTGGCATTTCTACTCTTTCTCAATCCCCAA
+
+a score=36
+s phiX 3394 36 + 5386 TAAAATGCAACTGGACAATCAGAAAGAGATTGCCGA
+s read    0 36 +   36 TAAAATGCAACTGGACAATCAGAAAGAGATTGCCGA
+
+a score=36
+s phiX 408 36 + 5386 AATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTA
+s read   0 36 +   36 AATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTA
+
+a score=36
+s phiX 1866 36 + 5386 TGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCA
+s read    0 36 -   36 TGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCA
+
+a score=33
+s phiX 3779 33 + 5386 TCTAATGTCGTCACTGATGCTGCTTCTGGTGTG
+s read    0 33 +   36 TCTAATGTCGTCACTGATGCTGCTTCTGGTGTG
+
+a score=36
+s phiX 3981 36 + 5386 TGGTTCGTTCTTATTACCCTTCTGAATGTCACGCTG
+s read    0 36 +   36 TGGTTCGTTCTTATTACCCTTCTGAATGTCACGCTG
+
+a score=36
+s phiX 2814 36 + 5386 TATGTTGGTTTCATGGTTTGGTCTAACTTTACCGCT
+s read    0 36 -   36 TATGTTGGTTTCATGGTTTGGTCTAACTTTACCGCT
+
+a score=36
+s phiX 1241 36 + 5386 AGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCA
+s read    0 36 -   36 AGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCA
+
+a score=35
+s phiX 4658 35 + 5386 ATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCAA
+s read    1 35 -   36 ATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCAA
+
+a score=36
+s phiX 2435 36 + 5386 TTCTGATAAGCTGGTTCTCACTTCTGTTACTCCAGC
+s read    0 36 +   36 TTCTGATAAGCTGGTTCTCACTTCTGTTACTCCAGC
+
+a score=35
+s phiX 526 35 + 5386 TGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTT
+s read   0 35 +   36 TGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTT
+
+a score=28
+s phiX 4816 36 + 5386 CCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCA
+s read    0 36 -   36 CCCTAATTTGGGTCGTCGGGTACGCAATCGCCGCCA
+
+a score=36
+s phiX 2099 36 + 5386 AAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTG
+s read    0 36 +   36 AAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTG
+
+a score=36
+s phiX 2761 36 + 5386 TCAAGGACTGTGTGACTATTGACGTCCTTCCCCGTA
+s read    0 36 -   36 TCAAGGACTGTGTGACTATTGACGTCCTTCCCCGTA
+
+a score=36
+s phiX 4954 36 + 5386 TGATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTTA
+s read    0 36 +   36 TGATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTTA
+
+a score=36
+s phiX 3760 36 + 5386 CGCTACTGCAAAGGATATTTCTAATGTCGTCACTGA
+s read    0 36 -   36 CGCTACTGCAAAGGATATTTCTAATGTCGTCACTGA
+
+a score=28
+s phiX 4498 36 + 5386 GAAATCGCGTAGAGGCTTTGCTATTCAGCGTTTGAT
+s read    0 36 -   36 GAAATCGCGTAGAGGCTTTACTATTCAGCGTTTGAT
+
+a score=36
+s phiX 4038 36 + 5386 TCGAGGCTCTTAAACCTGCTATTGAGGCTTGTGGCA
+s read    0 36 -   36 TCGAGGCTCTTAAACCTGCTATTGAGGCTTGTGGCA
+
+a score=36
+s phiX 4787 36 + 5386 ATGCGGACACTTCCTACAGGTAGCGTTGACCCTAAT
+s read    0 36 -   36 ATGCGGACACTTCCTACAGGTAGCGTTGACCCTAAT
+
+a score=36
+s phiX 1001 36 + 5386 TGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGC
+s read    0 36 +   36 TGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGC
+
+a score=36
+s phiX 4380 36 + 5386 AGTTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTA
+s read    0 36 -   36 AGTTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTA
+
+a score=36
+s phiX 4255 36 + 5386 GAAGTTAATGGATGAATTGGCACAATGCTACAATGT
+s read    0 36 -   36 GAAGTTAATGGATGAATTGGCACAATGCTACAATGT
+
+a score=35
+s phiX  9 35 + 5386 CGCTTCCATGACGCAGAAGTTAACACTTTCGGATA
+s read  1 35 -   36 CGCTTCCATGACGCAGAAGTTAACACTTTCGGATA
+
+a score=36
+s phiX 1578 36 + 5386 TATGGGTCTGCAAGCTGCTTATGCTAATTTGCATAC
+s read    0 36 -   36 TATGGGTCTGCAAGCTGCTTATGCTAATTTGCATAC
+
+a score=30
+s phiX 988 30 + 5386 TGAGGATAAATTATGTCTAATATTCAAACT
+s read   0 30 +   36 TGAGGATAAATTATGTCTAATATTCAAACT
+
+a score=36
+s phiX 3861 36 + 5386 ATTTCTGGAAAGACGGTAAAGCTGATGGTATTGGCT
+s read    0 36 +   36 ATTTCTGGAAAGACGGTAAAGCTGATGGTATTGGCT
+
+a score=36
+s phiX 3277 36 + 5386 TACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCT
+s read    0 36 +   36 TACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCT
+
+a score=36
+s phiX 348 36 + 5386 TCTGAGTCCGATGCTGTTCAACCACTAATAGGTAAG
+s read   0 36 +   36 TCTGAGTCCGATGCTGTTCAACCACTAATAGGTAAG
+
+a score=36
+s phiX 4607 36 + 5386 TTAGAGGCGTTTTATGATAATCCCAATGCTTTGCGT
+s read    0 36 +   36 TTAGAGGCGTTTTATGATAATCCCAATGCTTTGCGT
+
+a score=35
+s phiX 3807 35 + 5386 GTGTGGTTGATATTTTTCATGGTATTGATAAAGCT
+s read    0 35 +   36 GTGTGGTTGATATTTTTCATGGTATTGATAAAGCT
+
+a score=31
+s phiX 4752 31 + 5386 CTAATGGCCGTCTTCATTTCCATGCGGTGCA
+s read    0 31 -   36 CTAATGGCCGTCTTCATTTCCATGCGGTGCA
+
+a score=36
+s phiX 285 36 + 5386 GAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTT
+s read   0 36 -   36 GAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTT
+
+a score=36
+s phiX 2849 36 + 5386 TACTAAATGCCGCGGATTGGTTTCGCTGAATCAGGT
+s read    0 36 +   36 TACTAAATGCCGCGGATTGGTTTCGCTGAATCAGGT
+
+a score=35
+s phiX 679 35 + 5386 CATGGAAGGCGCTGAATTTACGGAAAACATTATTA
+s read   1 35 -   36 CATGGAAGGCGCTGAATTTACGGAAAACATTATTA
+
+a score=36
+s phiX 4739 36 + 5386 GAGTATGGTACAGCTAATGGCCGTCTTCATTTCCAT
+s read    0 36 -   36 GAGTATGGTACAGCTAATGGCCGTCTTCATTTCCAT
+
+a score=25
+s phiX 4654 25 + 5386 TGATATTGGTCGTATGGTTCTTGCT
+s read    0 25 +   36 TGATATTGGTCGTATGGTTCTTGCT
+
+a score=35
+s phiX 2466 35 + 5386 CCAGCTTCTTCGGCACCTGTTTTACAGACACCTAA
+s read    1 35 -   36 CCAGCTTCTTCGGCACCTGTTTTACAGACACCTAA
+
+a score=34
+s phiX 319 34 + 5386 TTGACATTTTAAAAGAGCGTGGATTACTATCTGA
+s read   0 34 +   36 TTGACATTTTAAAAGAGCGTGGATTACTATCTGA
+
+a score=34
+s phiX 1179 34 + 5386 TATTGACTCTACTGTAGACATTTTTACTTTTTAT
+s read    0 34 +   36 TATTGACTCTACTGTAGACATTTTTACTTTTTAT
+
+a score=36
+s phiX 520 36 + 5386 TGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGA
+s read   0 36 -   36 TGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGA
+
+a score=36
+s phiX 332 36 + 5386 AGAGCGTGGATTACTATCTGAGTCCGATGCTGTTCA
+s read   0 36 -   36 AGAGCGTGGATTACTATCTGAGTCCGATGCTGTTCA
+
+a score=36
+s phiX 2755 36 + 5386 ATACCGTCAAGGACTGTGTGACTATTGACGTCCTTC
+s read    0 36 +   36 ATACCGTCAAGGACTGTGTGACTATTGACGTCCTTC
+
+a score=36
+s phiX 4956 36 + 5386 ATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTTATA
+s read    0 36 -   36 ATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTTATA
+
+a score=36
+s phiX 71 36 + 5386 ATAAAGCAGGAATTACTACTGCTTGTTTACGAATTA
+s read  0 36 -   36 ATAAAGCAGGAATTACTACTGCTTGTTTACGAATTA
+
+a score=36
+s phiX 4248 36 + 5386 TTACTGAGAAGTTAATGGATGAATTGGCACAATGCT
+s read    0 36 -   36 TTACTGAGAAGTTAATGGATGAATTGGCACAATGCT
+
+a score=36
+s phiX 2591 36 + 5386 CAACGCCGCTAATCAGGTTGTTTCTGTTGGTGCTGA
+s read    0 36 -   36 CAACGCCGCTAATCAGGTTGTTTCTGTTGGTGCTGA
+
+a score=36
+s phiX 1973 36 + 5386 CGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTT
+s read    0 36 -   36 CGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTT
+
+a score=36
+s phiX 3539 36 + 5386 AAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAA
+s read    0 36 -   36 AAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAA
+
+a score=36
+s phiX 4129 36 + 5386 CATCAAGCTCTTGGAAGAGATTCTGTCTTTTCGTAT
+s read    0 36 -   36 CATCAAGCTCTTGGAAGAGATTCTGTCTTTTCGTAT
+
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/lastz_wrapper_out2.sam	Mon Nov 26 09:47:51 2012 -0500
@@ -0,0 +1,459 @@
+HWI-EAS91_1_306UPAAXX	16	phiX174	4295	255	1H35M	*	0	0	CCCCCAACTTGATATTAATAACACTATAGACCACC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3522	255	36M	*	0	0	ATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	229	255	36M	*	0	0	GATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2071	255	36M	*	0	0	GTATGTTTCTCCTGCTTATCACCTTCTTGAAGGCTT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1067	255	1H35M	*	0	0	GGTCAGATTGGTCGTCTTATTACCATTTCAACTAC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1788	255	36M	*	0	0	GTCGTGTTCAACAGACCTATAAACATTCTGTGCCGC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1193	255	36M	*	0	0	GTAGACATTTTTACTTTTTATGTCCCTCATCGTCAC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4563	255	36M	*	0	0	GGTTGGTTTATCGTTTTTGACACTCTCACGTTGTCT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2668	255	36M	*	0	0	GTTCGCTTTGAGTCTTCTTCGGTTCCGACTACCCTC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4248	255	36M	*	0	0	GTTACTGAGAAGTTAATGGATGAATTGGCACAATGC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2863	255	36M	*	0	0	GGATTGGTTTCGCTGAATCAGGTTATTAAAGAGATT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2557	255	36M	*	0	0	GGTTTTCTTCATTGCATTCAGATGGATACATCTGTC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2511	255	34M2H	*	0	0	GTCAACGTTATATTTTGATAGTTTGACGGTTAAT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	5152	255	36M	*	0	0	GGATGAAAATGCTCACAATGACAAATCTGTCCACGG	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1590	255	36M	*	0	0	AAGCTGCTTATGCTAATTTGCATACTGACCAAGAAC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4884	255	36M	*	0	0	GGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	5052	255	36M	*	0	0	GCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4909	255	36M	*	0	0	GCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2863	255	36M	*	0	0	GGATTGGTTTCGCTGAATCAGGTTATTAAAGAGATT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4173	255	36M	*	0	0	GTTGAGTTCGATAATGGTGATATGTATGTTTACGGC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1701	255	36M	*	0	0	GTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCAT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1683	255	36M	*	0	0	CTTATGACGCTGACAACCGTCCTTTACTTGTCATGC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3126	255	1H35M	*	0	0	GAGGCCGCCCCTAGTTTTGTTTCTGGTGCTATGGC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1665	255	36M	*	0	0	CATTTGGAGGTAAAACCTCTTATGACGCTGACAACC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3213	255	36M	*	0	0	GTTTCTGATAAGTTGCTTGATTTGGTTGGACTTGGT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3420	255	36M	*	0	0	GAGATTGCCGAGATGCAAAATGAGACTCAAAAAGAG	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	513	255	36M	*	0	0	GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2879	255	36M	*	0	0	ATAAGGTTATTAAAGAGATTATTTGTCTCCAGCCAC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4471	255	36M	*	0	0	GTTCAAGATTGCTGGAGGCCTCCACTATGAAATCGC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1229	255	36M	*	0	0	GTTTATGGTGAACAGTGGATTAAGTTCATGAAGGAT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	615	255	36M	*	0	0	GAGTTTATTGCTGCCGTCATTGCTTATTATGTTCAT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	257	255	36M	*	0	0	GCACGTTCGTCAAGGACTGGTTTAGATATGAGTCAC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2381	255	36M	*	0	0	TTAGGAGTTTAATCATGTTTCAGACTTTTATTTCTC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4098	255	36M	*	0	0	ATGCTTGGCTTCCATAAGCAGATGGATAACCGCATC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	5099	255	36M	*	0	0	GCTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAG	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4254	255	36M	*	0	0	GAGAAGTTAATGGATGAATTGGCACAATGCTACAAT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3408	255	36M	*	0	0	GACAATCAGAAAGAGATTGCCGAGATGCAAAATGAG	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4043	255	36M	*	0	0	GGCTCTTAAACCTGCTATTGAGGCTTGTGGCATTTC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4560	255	36M	*	0	0	GATGGTTGGTTTATCGTTTTTGACACTCTCACGTTG	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1888	255	36M	*	0	0	GACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3434	255	1H35M	*	0	0	GCAAAATGAGACTCAAAAAGAGATTGCTGGCATTC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4539	255	36M	*	0	0	GCAATGCGACAGGCTCATGCTGATGGTTGGTTTATC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1828	255	36M	*	0	0	CTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3708	255	36M	*	0	0	GACTTAGTTCATCAGCAAACGCAGAATCAGCGGTAT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3326	255	36M	*	0	0	GCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4176	255	36M	*	0	0	GAGTTCGATAATGGTGATATGTATGTTGACGGCCAT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	22	255	36M	*	0	0	GCAGAAGTTAACACTTTCGGATATTTCTGATGAGTC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2557	255	36M	*	0	0	GGTTTTCTTCATTGCATTCAGATGGATACATCTGTC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3277	255	36M	*	0	0	ATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3592	255	36M	*	0	0	AGCAACAGCAGGTTTCCGAGATTATGCGCCAAATGC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	358	255	35M1H	*	0	0	GATGCTGTTCAACCACTAATAGGTAAGAAATCATG	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1775	255	36M	*	0	0	GGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3504	255	36M	*	0	0	GTATATGCACAAAATGAGATGCTTGCTTATCAACAG	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1554	255	36M	*	0	0	CGACTTCTACCACATCTATTGACATTATGGGTCTGC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1002	255	36M	*	0	0	TGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3626	255	36M	*	0	0	GCTTACTCAAGCTCAAACGGCTGGTCAGTATTTTAC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3572	255	36M	*	0	0	GGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1265	255	36M	*	0	0	GGTGTTAATGCCACTCCTCTCCCGACTGTTAACACT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1332	255	36M	*	0	0	GCACGATTAACCCTGATACCAATAAAATCCCTAAGC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4254	255	36M	*	0	0	GAGAAGTTAATGGATGAATTGGCACAATGCTACAAT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4170	255	36M	*	0	0	GGCGTTGAGTTCGATAATGGTGATATGTATGTTGAC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2806	255	36M	*	0	0	AATAATGTTTATGTTGGTTTCATGGTTTGGTCTAAC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3119	255	36M	*	0	0	CCCTGATGAGGCCGCCCCTAGTTTTGTTTCTGGTGC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1670	255	36M	*	0	0	GGAGGTAAAACCTCTTATGACGCTGACAACCGTCCT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	640	255	36M	*	0	0	ATTATGTTCATCCCGTCAACATTCAAACGGCCTGTC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2750	255	35M1H	*	0	0	GTTATTATACCGTCAAGGACTGTGTGACTATTGAC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4606	255	36M	*	0	0	GATTAGAGGCGTTTTATGATAATCCCAATGCTTTGC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3573	255	36M	*	0	0	GAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	5105	255	36M	*	0	0	GCTACTTCCCAAGAAGCTGTTCAGAATCAGAATGAG	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1674	255	36M	*	0	0	GTAAAACCTCTTATGACGCTGACAACCGTCCTTTAC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4095	255	36M	*	0	0	CCAATGCTTGGCTTCCATAAGCAGATGGATAACCGC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4551	255	36M	*	0	0	GCTCATGCTGATGGTTGGTTTATCGTTTTTGACACT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3284	255	36M	*	0	0	TGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4005	255	36M	*	0	0	GAATGTCACGCTGATTATTTTGACTTTGAGCGTATC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2479	255	36M	*	0	0	GCACCTGTTTTACAGACACCTAAAGCTACATCGTCA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1082	255	36M	*	0	0	CTTATTACCATTTCAACTACTCCGGTTATCGCTGGC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3045	255	1H35M	*	0	0	GCTACCGATAACAATACTGTAGGCATGGGTGATGC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1115	255	36M	*	0	0	GGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	636	255	36M	*	0	0	GCTTATTATGTTCATCCCGTCAACATTCAAACGTCC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1139	255	34M2H	*	0	0	GTTGGCGCTCTCCGTCTTTCTCCATTTCGTCGTG	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	852	255	36M	*	0	0	CTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	5272	255	36M	*	0	0	GATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4330	255	36M	*	0	0	GCCCCGAAGGGGACNANAAATGGTTTTTAGAGAACG	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4891	255	36M	*	0	0	GTATGCCCATCGCAGTTCGCTACACGCAGGACGCTT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4783	255	36M	*	0	0	ATTTTATGCGGACACTTCCTACAGGTAGCGTTGACC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3619	255	36M	*	0	0	GCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4455	255	36M	*	0	0	GGTATTAAGGATGAGTGTTCAAGATTGCTGGATGCC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	632	255	36M	*	0	0	CATTGCTTATTATGTTCATCCCGTCAACATTCAAAC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2964	255	35M1H	*	0	0	GCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGG	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2763	255	36M	*	0	0	CAAGGACTGTGTGACTATTGACGTCCTTCCCCGTAC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2766	255	36M	*	0	0	GGACTGTGTGACTATTGACGTCCTTCCCCGTACGCC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1719	255	36M	*	0	0	GCTCTAATCTCTGGGCATCTGGCTATGATGTTGATG	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3100	255	36M	*	0	0	AAGGCTCTAATGTTCCTAACCCTGATGAGGCCGCCC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	598	255	35M1H	*	0	0	GCTTTCCTGCTCCTGTTGAGTTTATTGCTTCCGTC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4126	255	36M	*	0	0	ACCGCATCAAGCTCTTGGAAGAGATTCTGTCTTTTC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4026	255	36M	*	0	0	GACTTTGAGCGTATCGAGGCTCTTAAACCTGCTATT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2621	255	36M	*	0	0	GTGCTGATATTGCTTTTGATGCCGACCCTAAATTTT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2749	255	36M	*	0	0	GGTTATTATACCGTCAAGGACTGTGTGACTATTGAC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	379	255	36M	*	0	0	GGTAAGAAATCATGAGTCAAGTTACTGAACAATCCG	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2160	255	36M	*	0	0	GCCACCATGATTATGACCAGTGTTTCCAGTCCGTTC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2873	255	36M	*	0	0	CGCTGAATCAGGTTATTAAAGAGATTATTTGTCTCC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1508	255	1H35M	*	0	0	TGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3863	255	36M	*	0	0	TTTCTGGAAAGACGGTAAAGCTGATGGTATTGGCTC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	5187	255	36M	*	0	0	GAGTGCTTAATCCAACTTACCAAGCTGGGTTACGAC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4196	255	36M	*	0	0	GTATGTTGACGGCCATAAGGCTGCTTCTGACGTTCG	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	635	255	36M	*	0	0	TGCTTATTATGTTCATCCCGTCAACATTCAAACGGC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1294	255	1H35M	*	0	0	TAACACTACTGGTTATATTGACCATGCCGCTTTTC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	5157	255	36M	*	0	0	AAAATGCTCACAATGACAAATCTGTCCACGGAGTGC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	772	255	36M	*	0	0	GCGCAGGAAACACTGACGTTCTTACTGACGCAGAAG	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1224	255	36M	*	0	0	GTCACGTTTATGGTGAACAGTGGATTAAGTTCATGA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1544	255	3H33M	*	0	0	CGCCAAATGACGACTTCTACCACATCTATTGAC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4840	255	36M	*	0	0	GCAATCGCCGCCAGTTAAATAGCTTGCAAAATACGT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	204	255	35M1H	*	0	0	GATTCTGTCAAAAACTGACGCGTTGGATGAGGAGA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2481	255	36M	*	0	0	ACCTGTTTTAAAGACACCTAAAGCTACATCGTCAAC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	332	255	36M	*	0	0	AAGAGCGTGGATTACTATCTGAGTCCGATGCTGTTC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3978	255	36M	*	0	0	TTTATGGTTCGTTCTTATTACCCTTCTGAATGTCAC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4865	255	36M	*	0	0	GCAAAATACGTGGCCTTATGGTTACAGTATGCCCAT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3271	255	36M	*	0	0	GAAAGGATACTCGTGATTATCTTGCTGCTGCATTTC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4174	255	36M	*	0	0	TTGAGTTCGATAATGGTGATATGTATGTTGACGGCC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2738	255	36M	*	0	0	GCCATGATGGTGGTTATTATACCGTCAAGGACTGTG	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2703	255	1H35M	*	0	0	CCCGACTGCCTATGATGTTTATCCTTTGAATGGTC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2943	255	36M	*	0	0	ATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3861	255	36M	*	0	0	AATTTCTGGAAAGACGGTAAAGCTGATGGTATTGGC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3093	255	36M	*	0	0	GCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAG	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3151	255	36M	*	0	0	GTGCTATGGCTAAAGCTGGTAAAGGACTTCTTGAAG	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1193	255	36M	*	0	0	GTAGACATTTTTACTTTTTATGTCCCTCATCGTCAC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	157	255	36M	*	0	0	CGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4792	255	36M	*	0	0	GGACACTTCCTACAGGTAGCGTTGACCCTAATTTTG	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3849	255	36M	*	0	0	GATACTTGGAACAATTTCTGGAAAGACGGTAAAGCT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2743	255	1H35M	*	0	0	GATGGTGGTTATTATACCGTCAAGGACTGTGTGAC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3015	255	36M	*	0	0	GCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTACC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1091	255	36M	*	0	0	ATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	798	255	1H35M	*	0	0	GACGCAGAAGAAAACGTGCGTCAAAAATTACGTGC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4866	255	36M	*	0	0	CAAAATACGTGGCCTTATGGTTACAGTATGCCCATC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4404	255	36M	*	0	0	GAACGCCCTCTTAAGGATATTCGCGATGAGTATAAT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1655	255	36M	*	0	0	GTTATTTCTTCATTTGGAGGTAAAACCTCTTATGAC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	5162	255	36M	*	0	0	GCTCACAATGACAAATCTGTCCACGGAGTGCTTAAT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1249	255	1H35M	*	0	0	TAAGTTCATGAAGGATGGTGTTAATGCCACTCCTC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3261	255	36M	*	0	0	GCTGATAAAGGAAAGGATACTCGTGATTATCTTGCT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3096	255	36M	*	0	0	ATTCAAGGCTCTAATGTTCCTAACCCTGATGAGGCC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2811	255	36M	*	0	0	TGTTTATGTTGGTTTCATGGTTTGGTCTAACTTTAC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3459	255	36M	*	0	0	GCTGGCATTCAGTCGGCGACTTCACGCCAGAATACG	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	789	255	35M1H	*	0	0	GTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3699	255	36M	*	0	0	GCTGAGGTTGACTTAGTTCATCAGCAAACGCAGAAT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2641	255	36M	*	0	0	GCCGACCCTAAATTTTTTGCCTGTTTGGTTCTCTTT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	305	255	36M	*	0	0	GTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTG	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3066	255	35M1H	*	0	0	GGCATGGGTGATGCTGGTATTAAATCTGCCATTCA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4428	255	36M	*	0	0	GATGAGTATAATTACCCCAAAAAGAAAGGTATTAAG	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1461	255	36M	*	0	0	AAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4000	255	36M	*	0	0	CTTCTGAATGTCACGCTGATTATTTTGACTTTGAGC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	220	255	36M	*	0	0	GACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3194	255	36M	*	0	0	GCAGGCTGGCACTTCTGCCGTTTCTGATAAGTTTCT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1266	255	35M1H	*	0	0	GTGTTAATGCCACTCCTCTCCCGACTGTTAACTCT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4596	255	36M	*	0	0	GCTGACGACCGATTAGAGGCGTTTTATGATAATCCC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1172	255	1H35M	*	0	0	GGCCTTGCTATTGACTCTACTGTAGACATTTTTAC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	636	255	36M	*	0	0	GCTTATTATGTTCATCCCGTCAACATTCAAACGGCC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2873	255	36M	*	0	0	CGCTGAATCAGGTTATTAAAGAGATTATTTGTCTCC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1014	255	36M	*	0	0	AAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2689	255	36M	*	0	0	GTTCCGACTACCCTCCCGACTGCCTATGATGTTTAT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2148	255	36M	*	0	0	GCGTACTTATTCGCCACCATGATTATTACCAGTGTT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	5191	255	35M1H	*	0	0	GCTTAATCCAACTTACCAAGCTGGGTTACGACGCG	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1590	255	36M	*	0	0	AAGCTGCTTATGCTAATTTGCATACTGACCAAGAAC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	571	255	35M1H	*	0	0	GTACGCTGTACTTTGTGGGATACCCTCGCTTTCCT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	242	255	36M	*	0	0	GGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	338	255	36M	*	0	0	GTGGATTACTATCTGAGTCCGATGCTGTTCAACCAC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1112	255	36M	*	0	0	GCTGGCGACTCCTTCGAGATGGACGCCGTTTGCGCT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1254	255	2H34M	*	0	0	TCATGAAGGATGGTGTTAATGCCACTCCTCTCCC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2970	255	36M	*	0	0	GCTGGTGGCGCCATGTCTAAATTTTTTGGAGGCGGT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	5151	255	36M	*	0	0	GGGATGAAAATGCTCACAATGACAAATCTGTCCACG	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	348	255	36M	*	0	0	ATCTGAGTCCGATGCTGTTCAACCACTAATAGGTAA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4888	255	1H35M	*	0	0	ACAGTATGCCCATCGCAGTTCGCTACACGCAGGAC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3972	255	33M3H	*	0	0	GGCTTTTTTATGGTTCGTTCTTATTACCCTTCT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	5033	255	36M	*	0	0	GTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1552	255	1H35M	*	0	0	GACGACTTCTACCACATCTATTGACATTATGGGTC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1764	255	36M	*	0	0	AAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAAC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1529	255	36M	*	0	0	GAGACTGAGCTTTCTCGCCAAATGACGACTTCTACC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4950	255	36M	*	0	0	CCTGTTGATGCTAAAGGTGAGCCGCTTAAAGCTACC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4484	255	36M	*	0	0	GGAGGCCTCCACTATGAAATCGCGTAGAGGCTTTAC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4767	255	1H35M	*	0	0	CATTTCCATGCGGTGCATTTTATGCGGACACTTCC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	177	255	36M	*	0	0	CTTTGCGACCTTTCGCCATCAACTAACGATTCTGTC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2577	255	36M	*	0	0	GATGGATACATCTGTCAACGCCGCTAATCAGGTTGT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	156	255	36M	*	0	0	GCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCG	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	227	255	36M	*	0	0	TGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	574	255	36M	*	0	0	CGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3021	255	36M	*	0	0	GGTGGCATTCAAGGTGATGTGCTTGCTACCGATAAC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3731	255	36M	*	0	0	GAATCAGCGGTATGGCTCTTCTCATATTGGCGCTAC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2436	255	36M	*	0	0	TTCTGATAAGCTGGTTCTCACTTCTGTTACTCCAGC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2710	255	36M	*	0	0	GCCTATGATGTTTATCCTTTGAATGGTCGCCATGAT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4228	255	35M1H	*	0	0	TTCGTGATGAGTTTGTATCTGTTACTGATAAGTTA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4606	255	34M2H	*	0	0	GATTAGAGGCGTTTTATGATAATCCCAATGCTTT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2766	255	36M	*	0	0	GGACTGTGTGACTATTGACGTCCTTCCCCGTACGCC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	582	255	34M2H	*	0	0	TTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTG	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1144	255	36M	*	0	0	CGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1514	255	36M	*	0	0	GCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1657	255	36M	*	0	0	TATTTCTTCATTTGGAGGTAAAACCTCTTATGACGC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2071	255	36M	*	0	0	GTATGTTTCTCCTGCTTATCACCTTCTTGAAGGCTT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1626	255	36M	*	0	0	GTGATTACTTCATGCAGCGTTACCGTGATGTTATTT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3250	255	36M	*	0	0	GCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTG	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1982	255	36M	*	0	0	GAAATTTCTATGAATGATGTTTTCCGTTCTGGTGAT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2217	255	36M	*	0	0	AGGTTAAATTTAATGTGACCGTTTATCGCAATCTGC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3480	255	1H35M	*	0	0	TCACGACAGAATACGAAAGACCAGGTATATGCACA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1690	255	36M	*	0	0	CGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1082	255	36M	*	0	0	CTTATTACCATTTCAACTACTCCGGTTATCGCTGGC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4282	255	36M	*	0	0	GCTACAATGTGCTCCCCCAACTTGATATTAATAACA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4136	255	34M2H	*	0	0	GCTCTTGGAAGAGATTCTGTCTTTTCGTATGCAG	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4414	255	36M	*	0	0	TTAAGGATATTCGCGATGAGTATAATTACCCCAAAA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3988	255	36M	*	0	0	GTTCTTATTACCCTTCTGAATGTCACGCTGATTATT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4203	255	36M	*	0	0	GACGGCCATAAGGCTGCTTCTGACGTTCGTGATGAG	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4098	255	36M	*	0	0	ATGCTTGGCTTCAATAAGCAGATGGATAACCGCATC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4307	255	35M1H	*	0	0	TATTAATAACACTATAGACCACCGCCCCGAAGGGG	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1521	255	35M1H	*	0	0	TTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACG	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	945	255	36M	*	0	0	TAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1575	255	36M	*	0	0	ACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2689	255	36M	*	0	0	GTTCCGACTACCCTCCCGACTGCCTATGATGTTTAT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2099	255	36M	*	0	0	GAAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	524	255	36M	*	0	0	TACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1252	255	36M	*	0	0	GTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4916	255	36M	*	0	0	GCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGTCC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3828	255	36M	*	0	0	GGTATTGATAAAGCTGTTGCCGATACTTGTAACAAT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3756	255	36M	*	0	0	ATTGGCGCTACTGCAAAGGATATTTCTAATGTCGTC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1116	255	36M	*	0	0	GCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3099	255	36M	*	0	0	CAAGGCTCTAATGTTCCTAACCCTGATGGGGCCGCC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3082	255	36M	*	0	0	GTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	613	255	36M	*	0	0	TTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4936	255	36M	*	0	0	CTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	289	255	36M	*	0	0	TCACATTTTGTTCATGGTAGAGATTCTCTTGTTGAC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4690	255	36M	*	0	0	GCAAGGCTAATGATTCACACGCCGACTGCTATCAGT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3520	255	36M	*	0	0	AGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3858	255	36M	*	0	0	AACAATTTCTGGAAAGACGGTAAAGCTGATGGTATT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3344	255	36M	*	0	0	TTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4672	255	36M	*	0	0	TTCTTGCTGCCGAGGGTCGCAAGGCTATTGTTTCAC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1800	255	36M	*	0	0	AGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	5077	255	36M	*	0	0	GGAACAACTCACTAAAAACCAAGCTGTCGCTACTTC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2763	255	1H35M	*	0	0	CAAGGACTGTGTGACTATTGACGTCCTTCCCCGTA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4282	255	36M	*	0	0	GCTACAATGTGCTCCCCCAACTTGATATTAATAACA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1203	255	36M	*	0	0	TTACTTTTTATGTCCCTCATCGTCACGTTTATGTTG	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	5107	255	36M	*	0	0	TACTTCCCAAGAAGCTGTTCAGAATCAGAATGAGCC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	5168	255	1H35M	*	0	0	AATGACAAATCTGTCCACGGAGTGCTTAATCCAAC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2956	255	36M	*	0	0	TTGCTTCTGCTCTTGCTTGTGGCGCCATGTCTAAAT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	624	255	36M	*	0	0	GCTGCCGTCATTGCTTATTATGTTCATCCCTTCAAC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1877	255	1H35M	*	0	0	CCGCCTACTGCGACTAAAGAGATTCAGTACCTTAA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1214	255	36M	*	0	0	GTCCCTCATCGTCACGTTTATGGTGAACAGTGGATT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	558	255	36M	*	0	0	GCTTGCGTTTATGGTACGCTGGACTTTTTGTGATAC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3629	255	36M	*	0	0	TACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2254	255	35M1H	*	0	0	GACCACTCGCGATTCAATCATGACTTCGTGATAAA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2479	255	36M	*	0	0	GCACCTGTTTTACAGACACCTAAAGCTACATCGTCA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3001	255	36M	*	0	0	GCGGTCAAAAAGCCGCCTCCGGTGGCATTCAAGGTG	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4667	255	35M1H	*	0	0	TATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAATG	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3464	255	36M	*	0	0	CATTCAGTCGGCGACTTCACGCCAGAATACGAAAGA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4911	255	35M1H	*	0	0	TACACGCAGGACGCTTTTTCACGTTCTGGTTGGTT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2222	255	36M	*	0	0	AAATTTAATGTGAACGTTTATCGCAATCTGCCGACC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	646	255	35M1H	*	0	0	TTCATCCCGTCAACATTCAAACGGCCTGTCTCATC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1364	255	36M	*	0	0	AAGCATTTGTTTCAGGGTTATTTGAATATCTATAAC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1613	255	1H35M	*	0	0	ACTGACCAAGAACGTGATTACTTCATGCAGCGTTA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1045	255	35M1H	*	0	0	TTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1588	255	36M	*	0	0	GCAAGCTGCTTATGCTAATTTGCATACTGACCAAGA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	339	255	36M	*	0	0	TGGATTACTATCTGAGTCCGATGCTGTTCAACCACT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4937	255	36M	*	0	0	TGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4344	255	2H34M	*	0	0	GAAAAATGGTTTTTAGAGAACGAGAAGACGGTTA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3674	255	36M	*	0	0	CAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4945	255	36M	*	0	0	TGTGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAAG	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1946	255	36M	*	0	0	GGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2662	255	36M	*	0	0	TGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCTACT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3313	255	36M	*	0	0	TTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	727	255	36M	*	0	0	GTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	555	255	36M	*	0	0	GAGGCTTGCGTTTATGGTACGCTGGACTTTGTGGGA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	485	255	36M	*	0	0	TGATTTCGATTTTCTGACGAGTAACAAAGTTTGGAT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	318	255	36M	*	0	0	TGTTGACATTTTAAAAGAGCGTGGATTACTATCTGA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	910	255	36M	*	0	0	TAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4936	255	36M	*	0	0	CTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	5005	255	36M	*	0	0	TCTATGTGGCTAAATACGTTAACAAAAAGTCAGATA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1379	255	36M	*	0	0	GGTTATTTGAATATCTATAACAACTATTTTAAATCG	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3168	255	36M	*	0	0	GGTAAAGGACTTCTTGAAGGTACGTTGCAGTCTGGC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2738	255	33M3H	*	0	0	GCCATGATGGTGGTTATTATACCGTCAAGGACT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4099	255	36M	*	0	0	TGCTTGGCTTCCATAAGCAGATGGATAACCGCATCA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2574	255	36M	*	0	0	TCAGATGGATACATCTGTCAACGCCGCTAATCAGGT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2453	255	36M	*	0	0	TCACTTCTGTTACTCCAGCTTCTTCGGCACCTGTTT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	5179	255	36M	*	0	0	TGTCCACGGAGTGCTTAATCCAACTTACCAAGCTGG	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3778	255	34M2H	*	0	0	TTTCTAATGTCGTCACTGATGCTGCTTCTGTTGT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1843	255	36M	*	0	0	TGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1082	255	36M	*	0	0	CTTATTACCATTTCAACTACTCCGGTTATCGCTGGC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1728	255	36M	*	0	0	TCTGGGCATCTGGCTATGATGTTGATGGAACTGACC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4637	255	36M	*	0	0	TTTGCGTGACTATTTTCGTGATATTGTTCGTATGGT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2225	255	36M	*	0	0	TTTAATGTGACCGTTTATCGCAATCTGCCGACCACT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3368	255	36M	*	0	0	CGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3311	255	36M	*	0	0	GCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	5039	255	36M	*	0	0	TATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2059	255	36M	*	0	0	TTATGCGCCTTCGTATGTTTCTCCTGCTTATCACCT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	388	255	36M	*	0	0	TCATGAGTCAAGTTACTGAACAATCCGTACGTTTCC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2754	255	36M	*	0	0	TTATACCGTCAAGGACTGTGTGACTATTGACGTCCT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2128	255	36M	*	0	0	TTCTGGTGATTTGCAAGAACGCGTACTTATTCGCCA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	154	255	36M	*	0	0	TTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3617	255	36M	*	0	0	GCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2728	255	36M	*	0	0	TTGAATGGTCGCCATGATGGTGGTTATTATACCGTC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2775	255	36M	*	0	0	GACTATTGACGTCCTTCCCCGTACGCCGGGCAATAA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4217	255	36M	*	0	0	TGCTTCTGACGTTCGTGATGAGTTTGTATCTGTTAC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4619	255	35M1H	*	0	0	TTATGATAATCCCAATGCTTTGCGTGACTATTTTC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	411	255	35M1H	*	0	0	TCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2730	255	35M1H	*	0	0	GAATGGTCGCCATGATGGTGGTTATTATACCGTCA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	521	255	35M1H	*	0	0	TGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTG	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4260	255	36M	*	0	0	TTAATGGATGAATTGGCACAATGCTACAATGTGCTC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1662	255	36M	*	0	0	CTTCATTTGGAGGTAAAACCTCTTATGACGCTGACA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	533	255	36M	*	0	0	CTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	195	255	35M1H	*	0	0	TCAACTAACGATTCTGTCAAAAACTGACGCGTTGG	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2239	255	36M	*	0	0	TTATCGCAATCTGCCGACCACTCGCGATTCAATCAT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1313	255	36M	*	0	0	GACCATGCCGCTTTTCTTGGCACGATTAACCCTTAT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1545	255	36M	*	0	0	GCCAAATGACGACTTCTACCACATCTATTGACATTA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	557	255	36M	*	0	0	GGCTTGCGTTTATGGTACGCTGGACTTTGTGGGATA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1249	255	36M	*	0	0	TAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4174	255	36M	*	0	0	TTGAGTTCGATAATGGTGATATGTATGTTGACGTCC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	614	255	35M1H	*	0	0	TGAGTTTATTGCTGCCGTCATTGCTTATTATGTTC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	206	255	36M	*	0	0	TTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4981	255	36M	*	0	0	CTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1702	255	36M	*	0	0	TCCTTTACTTGTCATGCGCTCTAATCTCTGTGCATC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2321	255	35M1H	*	0	0	TAAAAATTTTAATTTTTGCCGCTGAGGGGTTGACC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4088	255	35M1H	*	0	0	TCAATCCCCAATGCTTGGCTTCCATAAGCAGATGG	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	900	255	36M	*	0	0	TGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1155	255	36M	*	0	0	TTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3587	255	36M	*	0	0	TTCCAAGCAACAGCAGGTTTCCGAGATTATGCGCCA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3787	255	36M	*	0	0	TCGTCACTGATGCTGCTTCTGGTGTGGTTGATATTT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3834	255	35M1H	*	0	0	GATAAAGCTGTTGCCGATACTTGGAACAATTTCTG	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	989	255	36M	*	0	0	TGAGGATAAATTATGTCTAATATTCAAACTGGCGCC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3712	255	36M	*	0	0	TAGTTCATCAGCAAACGCAGAATCAGCGGTATGGCT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1207	255	36M	*	0	0	TTTTTATGTCCCTCATCGTCACGTTTATGGTGAACA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2116	255	36M	*	0	0	TCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	660	255	36M	*	0	0	ATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1536	255	36M	*	0	0	AGCTTTCTCGCCAAATGACGACTTCTACCACATCTA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2112	255	1H35M	*	0	0	TCATTCAGGAACCGCCTTCTGGTGATTTGCAAGAA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2816	255	36M	*	0	0	ATGTTGGTTTCATGGTTTGGTCTAACTTTACCGCTA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	5176	255	36M	*	0	0	ATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3472	255	36M	*	0	0	CGGCGACTTCACGCCAGAATACGAAAGACCAGGTAT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1948	255	36M	*	0	0	CGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2212	255	35M1H	*	0	0	TAGTCAGGTTAAATTTAATGTGACCGTTTATCGCA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3817	255	35M1H	*	0	0	ATATTTTTCATGGTATTGATAAAGCTGTTGCCGAT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3563	255	36M	*	0	0	GTCTATTATGGAAAACACCAATCTTTCCAAGCAACA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4198	255	1H35M	*	0	0	ATGTTGACGGCCATAAGGCTGCTTCTGACGTTCGT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2907	255	1H35M	*	0	0	CCAGCCACTTAAGTGAGGTGATTTATGTTTGGTGC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2843	255	35M1H	*	0	0	TTACCGCTACTAAATGCCGCGGATTGGTTTCGCTG	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4374	255	36M	*	0	0	GTTACGCAGTTTTGCCGCAAGCTGGCTGCTGTACGC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1940	255	1H35M	*	0	0	ATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	5073	255	36M	*	0	0	GAATGGAACAACTCACTAAAAACCAAGCTGTCGCTA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4434	255	36M	*	0	0	TATAATTACCCCAAAAAGAAAGGTATTAAGGATGAG	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1274	255	1H35M	*	0	0	GCCACTCCTCTCCCGACTGTTAACACTACTGGTTA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4440	255	36M	*	0	0	TACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3920	255	36M	*	0	0	GTCAGGATTGACACCCTCCCAATTGTATGTTTTCAT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4587	255	1H35M	*	0	0	CTCACGTTGGCTGACGACCGATTAGAGGCGTTTTA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1707	255	36M	*	0	0	TACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1582	255	36M	*	0	0	GGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1588	255	36M	*	0	0	GCAAGCTGCTTATGCTAATTTGCATACTGACCAAGA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1180	255	34M2H	*	0	0	TATTGACTCTACTGTAGACATTTTTACTTTTTAT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2698	255	36M	*	0	0	ACCCTCCCGACTGCCTATGATGTTTATCCTTTGAAT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3167	255	36M	*	0	0	TGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2289	255	36M	*	0	0	AGATTGAGTGTGAGGTTATAACGCCGAAGCGGTAAA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	441	255	36M	*	0	0	ATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1012	255	36M	*	0	0	TCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	161	255	36M	*	0	0	GCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1165	255	1H35M	*	0	0	GCGTCGTGGCCTTGCTATTGACTCTACTGTAGACA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	5010	255	36M	*	0	0	GTGGATAAATACGTTAACAAAAAGTCAGATATGGAC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2286	255	36M	*	0	0	AAAAGATTGAGTGTGAGGTTATAACGCCGAAGCGGT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	801	255	36M	*	0	0	GCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1587	255	36M	*	0	0	TGCAAGCTGCTTATGCTAATTTGCATACTGACCAAG	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4578	255	36M	*	0	0	TTTGACACTCTCACGTTGGCTGACGACCGATTAGAG	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3570	255	36M	*	0	0	ATGGAAAACACCAATCTTTCCAAGCAACAGCAGGTT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	496	255	36M	*	0	0	TTCTGACGAGTAACAAAGTTTGGATTGCTACTGACC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	441	255	36M	*	0	0	ATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4754	255	36M	*	0	0	TAATGGCCGTCTTCATTTCCATGCGGTGCATTTTAT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4235	255	35M1H	*	0	0	TGAGTTTGTATCTGTTACTGAGAAGTTAATGGATG	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2293	255	36M	*	0	0	TGAGTGTGAGGTTATAACGCCGAAGCGGTAAAAATT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1579	255	1H35M	*	0	0	TATGGGTCTGCAAGCTGCTTATGCTAATTTGCATA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3332	255	36M	*	0	0	TGGTGCTGATGCTTCCTCTGCTGGTATGGTTTACGC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4132	255	36M	*	0	0	TCAAGCTCTTGGAAGAGATTCTGTCTTTTCGTATGC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4775	255	36M	*	0	0	TGCGGTGCATTTTATGCGGACACTTCCTACAGGTAG	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1	255	4H32M	*	0	0	GAGTTTTATCGCTTCCATGACGCAGAAGTTAA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	54	255	36M	*	0	0	AGTCGAAAAATTATCTTGATAAAGCAGGAATTACTA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	680	255	1H35M	*	0	0	CATGGAAGGCGCTGAATTTACGGAAAACATTATTA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	231	255	36M	*	0	0	TGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4192	255	36M	*	0	0	ATATGTATGTTGACGGCCATAAGGCTGCTTCTGACG	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1580	255	36M	*	0	0	ATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	611	255	36M	*	0	0	TGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4532	255	1H35M	*	0	0	GATGAATGCAATGCGACAGGCTCATGCTGATGGTT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	638	255	35M1H	*	0	0	TTATTATGTTCATCCCGTCAACATTCAAACTGCCT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1957	255	36M	*	0	0	TTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTAT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2728	255	36M	*	0	0	TTGAATGGTCGCCATGATGGTGGTTATTATACCGTC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3979	255	36M	*	0	0	TTATGGTTCGTTCTTATTACCCTTCTGAATGTCACG	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	540	255	1H35M	*	0	0	GCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGTAC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1852	255	36M	*	0	0	GTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4684	255	36M	*	0	0	AGGGTCGCAAGGCTAATGATTCACACGCCGACTGCT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3690	255	36M	*	0	0	AAGGTTAGTGCTGAGGTTGACTTAGTTCATCATCAA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	584	255	36M	*	0	0	TGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3852	255	1H35M	*	0	0	ACTTGGAACAATTTCTGGAAAGACGGTAAAGCTGA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2857	255	35M1H	*	0	0	TGCCGCGGATTGGTTTCGCTGAATCAGGTTATTAA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1728	255	36M	*	0	0	TCTGGGCATCTGGCTATGATGTTGATGGAACTGACC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4658	255	35M1H	*	0	0	TATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1721	255	36M	*	0	0	TCTAATCTCTGGGCATCTGGCTATGATGTTGATGGA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1954	255	36M	*	0	0	TGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	962	255	36M	*	0	0	TAATTGCAGGGGCTTCGGCCCCTTACTTGAGGATAA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2175	255	36M	*	0	0	ACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2442	255	36M	*	0	0	TAAGCTGGTTCTCACTTCTGTTACTCCAGCTTCTTC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	5126	255	1H35M	*	0	0	CAGAATCAGAATGAGCCGCAACTTCGGGATGAAAA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	5206	255	36M	*	0	0	CCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2879	255	36M	*	0	0	ATCAGGTTATTAAAGAGATTATTTGTCTCCAGCCAC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2004	255	36M	*	0	0	TCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTG	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2154	255	36M	*	0	0	TTATTCGCCACCATGATTATGACCAGTGTTTCCAGT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1093	255	35M1H	*	0	0	TTCAACTACTCCGGTTATCGCTGGCGACTCCTTCG	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3127	255	36M	*	0	0	AGGCCGCCCCTAGTTTTGTTTCTGGTGCTATGGCTA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3544	255	36M	*	0	0	AGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2508	255	35M1H	*	0	0	ATCGTCAACGTTATATTTTGATAGTTTGACGTTTA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3600	255	36M	*	0	0	CAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1734	255	36M	*	0	0	CATCTGGCTATGATGTTGATGGAACTGACCAAACGT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2655	255	33M3H	*	0	0	TTTTGCCTGTTTGGTTCGCTTTGAGTCTTCTTC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2934	255	36M	*	0	0	TTTGGTGCTATTGCTGGCGGTATTGCTTCTGCTCTT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1522	255	36M	*	0	0	TCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGAC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4063	255	36M	*	0	0	AGGCTTGTGGCATTTCTACTCTTTCTCAATCCCCAA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3395	255	36M	*	0	0	TAAAATGCAACTGGACAATCAGAAAGAGATTGCCGA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	409	255	36M	*	0	0	AATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1867	255	36M	*	0	0	TGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3780	255	36M	*	0	0	TCTAATGTCGTCACTGATGCTGCTTCTGGTGTGTTT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3982	255	36M	*	0	0	TGGTTCGTTCTTATTACCCTTCTGAATGTCACGCTG	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2815	255	36M	*	0	0	TATGTTGGTTTCATGGTTTGGTCTAACTTTACCGCT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1242	255	36M	*	0	0	AGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4659	255	1H35M	*	0	0	ATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCAA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2436	255	36M	*	0	0	TTCTGATAAGCTGGTTCTCACTTCTGTTACTCCAGC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	527	255	35M1H	*	0	0	TGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4817	255	36M	*	0	0	CCCTAATTTGGGTCGTCGGGTACGCAATCGCCGCCA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2100	255	36M	*	0	0	AAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTG	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2762	255	36M	*	0	0	TCAAGGACTGTGTGACTATTGACGTCCTTCCCCGTA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4955	255	36M	*	0	0	TGATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTTA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3761	255	36M	*	0	0	CGCTACTGCAAAGGATATTTCTAATGTCGTCACTGA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4499	255	36M	*	0	0	GAAATCGCGTAGAGGCTTTACTATTCAGCGTTTGAT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4039	255	36M	*	0	0	TCGAGGCTCTTAAACCTGCTATTGAGGCTTGTGGCA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4788	255	36M	*	0	0	ATGCGGACACTTCCTACAGGTAGCGTTGACCCTAAT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1002	255	36M	*	0	0	TGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4381	255	36M	*	0	0	AGTTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4256	255	36M	*	0	0	GAAGTTAATGGATGAATTGGCACAATGCTACAATGT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	10	255	1H35M	*	0	0	CGCTTCCATGACGCAGAAGTTAACACTTTCGGATA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1579	255	36M	*	0	0	TATGGGTCTGCAAGCTGCTTATGCTAATTTGCATAC	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3862	255	36M	*	0	0	ATTTCTGGAAAGACGGTAAAGCTGATGGTATTGGCT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3278	255	36M	*	0	0	TACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	349	255	36M	*	0	0	TCTGAGTCCGATGCTGTTCAACCACTAATAGGTAAG	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	4608	255	36M	*	0	0	TTAGAGGCGTTTTATGATAATCCCAATGCTTTGCGT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	3808	255	35M1H	*	0	0	GTGTGGTTGATATTTTTCATGGTATTGATAAAGCT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4753	255	36M	*	0	0	CTAATGGCCGTCTTCATTTCCATGCGGTGCATTTTA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	286	255	36M	*	0	0	GAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTT	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2850	255	36M	*	0	0	TACTAAATGCCGCGGATTGGTTTCGCTGAATCAGGT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	680	255	1H35M	*	0	0	CATGGAAGGCGCTGAATTTACGGAAAACATTATTA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4740	255	36M	*	0	0	GAGTATGGTACAGCTAATGGCCGTCTTCATTTCCAT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2467	255	1H35M	*	0	0	CCAGCTTCTTCGGCACCTGTTTTACAGACACCTAA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	320	255	34M2H	*	0	0	TTGACATTTTAAAAGAGCGTGGATTACTATCTGA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	1180	255	34M2H	*	0	0	TATTGACTCTACTGTAGACATTTTTACTTTTTAT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	521	255	36M	*	0	0	TGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	333	255	36M	*	0	0	AGAGCGTGGATTACTATCTGAGTCCGATGCTGTTCA	*
+HWI-EAS91_1_306UPAAXX	0	phiX174	2756	255	36M	*	0	0	ATACCGTCAAGGACTGTGTGACTATTGACGTCCTTC	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4957	255	36M	*	0	0	ATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTTATA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	72	255	36M	*	0	0	ATAAAGCAGGAATTACTACTGCTTGTTTACGAATTA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4249	255	36M	*	0	0	TTACTGAGAAGTTAATGGATGAATTGGCACAATGCT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	2592	255	36M	*	0	0	CAACGCCGCTAATCAGGTTGTTTCTGTTGGTGCTGA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	1974	255	36M	*	0	0	CGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTT	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	3540	255	36M	*	0	0	AAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAA	*
+HWI-EAS91_1_306UPAAXX	16	phiX174	4130	255	36M	*	0	0	CATCAAGCTCTTGGAAGAGATTCTGTCTTTTCGTAT	*
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/lastz_wrapper_out3.tabular	Mon Nov 26 09:47:51 2012 -0500
@@ -0,0 +1,22 @@
+phiX174	1164	1165	+	5386	HWI-EAS91_1_306UPAAXX:6:1:112:1280	26	27	+	36	G	T	GTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTG	GTTGGCGCTCTCCGTCTTTCTCCATTTCGTCGTG
+phiX174	2490	2491	+	5386	HWI-EAS91_1_306UPAAXX:6:1:486:822	10	11	-	36	C	A	ACCTGTTTTACAGACACCTAAAGCTACATCGTCAAC	ACCTGTTTTAAAGACACCTAAAGCTACATCGTCAAC
+phiX174	2205	2206	+	5386	HWI-EAS91_1_306UPAAXX:6:1:217:737	14	15	+	36	G	T	GTTCAGTTGTTGCAGTGGAATA	GTTCAGTTGTTGCATTGGAATA
+phiX174	2173	2174	+	5386	HWI-EAS91_1_306UPAAXX:6:1:259:1389	26	27	+	36	G	T	GCGTACTTATTCGCCACCATGATTATGACCAGTGTT	GCGTACTTATTCGCCACCATGATTATTACCAGTGTT
+phiX174	578	579	+	5386	HWI-EAS91_1_306UPAAXX:6:1:317:1411	8	9	+	36	G	T	GTACGCTGGACTTTGTGGGATACCCTCGCTTTCCT	GTACGCTGTACTTTGTGGGATACCCTCGCTTTCCT
+phiX174	2992	2993	+	5386	HWI-EAS91_1_306UPAAXX:6:1:458:1629	23	24	+	36	G	T	GCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGT	GCTGGTGGCGCCATGTCTAAATTTTTTGGAGGCGGT
+phiX174	1995	1996	+	5386	HWI-EAS91_1_306UPAAXX:6:1:590:331	14	15	+	36	G	T	GAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGAT	GAAATTTCTATGAATGATGTTTTCCGTTCTGGTGAT
+phiX174	3261	3262	+	5386	HWI-EAS91_1_306UPAAXX:6:1:221:1238	17	18	-	36	C	A	AAGTCTGCCGCTGATAAAGGAAAGGATAC	AAGTCTGCCGATGATAAAGGAAAGGATAC
+phiX174	4109	4110	+	5386	HWI-EAS91_1_306UPAAXX:6:1:478:252	12	13	-	36	C	A	ATGCTTGGCTTCCATAAGCAGATGGATAACCGCATC	ATGCTTGGCTTCAATAAGCAGATGGATAACCGCATC
+phiX174	3126	3127	+	5386	HWI-EAS91_1_306UPAAXX:6:1:589:96	28	29	-	36	A	G	CAAGGCTCTAATGTTCCTAACCCTGATGAGGCCGCC	CAAGGCTCTAATGTTCCTAACCCTGATGGGGCCGCC
+phiX174	2569	2570	+	5386	HWI-EAS91_1_306UPAAXX:6:1:1472:716	23	24	+	36	G	T	TGGTAATGGTGGTTTTCTTCATTGCATTCAG	TGGTAATGGTGGTTTTCTTCATTTCATTCAG
+phiX174	2972	2973	+	5386	HWI-EAS91_1_306UPAAXX:6:1:836:1204	17	18	+	36	G	T	TTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAAT	TTGCTTCTGCTCTTGCTTGTGGCGCCATGTCTAAAT
+phiX174	2234	2235	+	5386	HWI-EAS91_1_306UPAAXX:6:1:172:1412	13	14	-	36	C	A	AAATTTAATGTGACCGTTTATCGCAATCTGCCGACC	AAATTTAATGTGAACGTTTATCGCAATCTGCCGACC
+phiX174	2902	2903	+	5386	HWI-EAS91_1_306UPAAXX:6:1:540:1415	18	19	+	36	G	T	TTATTAAAGAGATTATTTGTCTCCAGCCACTTA	TTATTAAAGAGATTATTTTTCTCCAGCCACTTA
+phiX174	2837	2838	+	5386	HWI-EAS91_1_306UPAAXX:6:1:253:1162	14	15	-	36	T	A	ATGGTTTGGTCTAACTTTACCGCTACTAAATGC	ATGGTTTGGTCAAACTTTACCGCTACTAAATGC
+phiX174	4662	4663	+	5386	HWI-EAS91_1_306UPAAXX:6:1:828:754	26	27	+	36	G	T	TTTGCGTGACTATTTTCGTGATATTGGTCGTATGGT	TTTGCGTGACTATTTTCGTGATATTGTTCGTATGGT
+phiX174	4202	4203	+	5386	HWI-EAS91_1_306UPAAXX:6:1:891:1437	19	20	+	36	G	T	TAATGGTGATATGTATGTTGACGGCCATAAGGCTG	TAATGGTGATATGTATGTTTACGTCCATAAGGCTG
+phiX174	4206	4207	+	5386	HWI-EAS91_1_306UPAAXX:6:1:891:1437	23	24	+	36	G	T	TAATGGTGATATGTATGTTGACGGCCATAAGGCTG	TAATGGTGATATGTATGTTTACGTCCATAAGGCTG
+phiX174	430	431	+	5386	HWI-EAS91_1_306UPAAXX:6:1:203:667	9	10	-	36	T	C	AGACCGCTTTGGCCTCTATTAAGC	AGACCGCCTTGGCCTCTATTAAGC
+phiX174	2857	2858	+	5386	HWI-EAS91_1_306UPAAXX:6:1:578:971	15	16	+	36	G	T	CGCTACTAAATGCCGCGGATTGGTTTCG	CGCTACTAAATTCCGCGGATTGGTTTCG
+phiX174	3112	3113	+	5386	HWI-EAS91_1_306UPAAXX:6:1:1721:1800	27	28	-	36	T	C	TCAAGGCTCTAATGTTCCTAACCC	TCAAGGCTCTAATGTCCCTAACCC
+phiX174	4825	4826	+	5386	HWI-EAS91_1_306UPAAXX:6:1:815:1640	9	10	-	36	T	G	CCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCA	CCCTAATTTGGGTCGTCGGGTACGCAATCGCCGCCA
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/lastz_wrapper_out4.tabular	Mon Nov 26 09:47:51 2012 -0500
@@ -0,0 +1,491 @@
+14	phiX1	+	2310	2192	2191	2213	22	GTTCAGTTGTTGCAGTGGAATA	HWI-EAS91_1_306UPAAXX	+	36	1	0	22	1	0	22	22	GTTCAGTTGTTGCATTGGAATA	..............x.......	22M	21/22	95.5%	22/36	61.1%	0/22	0.0%	2191	NA
+16	phiX1	+	2310	424	423	447	24	AGACCGCTTTGGCCTCTATTAAGC	HWI-EAS91_1_306UPAAXX	-	36	3	2	26	11	10	34	24	AGACCGCCTTGGCCTCTATTAAGC	.......:................	24M	23/24	95.8%	24/36	66.7%	0/24	0.0%	421	NA
+16	phiX2	+	3076	788	787	811	24	TCAAGGCTCTAATGTTCCTAACCC	HWI-EAS91_1_306UPAAXX	-	36	13	12	36	1	0	24	24	TCAAGGCTCTAATGTCCCTAACCC	...............:........	24M	23/24	95.8%	24/36	66.7%	0/24	0.0%	775	NA
+18	phiX1	+	2310	657	656	674	18	AACATTCAAACGGCCTGT	HWI-EAS91_1_306UPAAXX	-	36	19	18	36	1	0	18	18	AACATTCAAACGGCCTGT	..................	18M	18/18	100.0%	18/36	50.0%	0/18	0.0%	638	NA
+18	phiX2	+	3076	1421	1420	1438	18	GAATCAGCGGTATGGCTC	HWI-EAS91_1_306UPAAXX	+	36	1	0	18	1	0	18	18	GAATCAGCGGTATGGCTC	..................	18M	18/18	100.0%	18/36	50.0%	0/18	0.0%	1420	NA
+18	phiX2	+	3076	2625	2624	2642	18	TCTGGTTGGTTGTGGCCT	HWI-EAS91_1_306UPAAXX	+	36	1	0	18	1	0	18	18	TCTGGTTGGTTGTGGCCT	..................	18M	18/18	100.0%	18/36	50.0%	0/18	0.0%	2624	NA
+19	phiX2	+	3076	1874	1873	1908	35	TAATGGTGATATGTATGTTGACGGCCATAAGGCTG	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	TAATGGTGATATGTATGTTTACGTCCATAAGGCTG	...................x...x...........	35M	33/35	94.3%	35/36	97.2%	0/35	0.0%	1873	NA
+20	phiX2	+	3076	537	536	564	28	CGCTACTAAATGCCGCGGATTGGTTTCG	HWI-EAS91_1_306UPAAXX	+	36	5	4	32	5	4	32	28	CGCTACTAAATTCCGCGGATTGGTTTCG	...........x................	28M	27/28	96.4%	28/36	77.8%	0/28	0.0%	532	NA
+20	phiX2	+	3076	628	627	647	20	GTGCTATTGCTGGCGGTATT	HWI-EAS91_1_306UPAAXX	+	36	1	0	20	1	0	20	20	GTGCTATTGCTGGCGGTATT	....................	20M	20/20	100.0%	20/36	55.6%	0/20	0.0%	627	NA
+21	phiX1	+	2310	1	0	21	21	GAGTTTTATCGCTTCCATGAC	HWI-EAS91_1_306UPAAXX	-	36	16	15	36	1	0	21	21	GAGTTTTATCGCTTCCATGAC	.....................	21M	21/21	100.0%	21/36	58.3%	0/21	0.0%	-15	-21
+21	phiX2	+	3076	1990	1989	2010	21	AACTTGATATTAATAACACTA	HWI-EAS91_1_306UPAAXX	-	36	16	15	36	1	0	21	21	AACTTGATATTAATAACACTA	.....................	21M	21/21	100.0%	21/36	58.3%	0/21	0.0%	1974	NA
+21	phiX2	+	3076	942	941	970	29	AAGTCTGCCGCTGATAAAGGAAAGGATAC	HWI-EAS91_1_306UPAAXX	-	36	8	7	36	1	0	29	29	AAGTCTGCCGATGATAAAGGAAAGGATAC	..........x..................	29M	28/29	96.6%	29/36	80.6%	0/29	0.0%	934	NA
+22	phiX1	+	2310	2289	2288	2310	22	AGATTGAGTGTGAGGTTATAAC	HWI-EAS91_1_306UPAAXX	-	36	1	0	22	15	14	36	22	AGATTGAGTGTGAGGTTATAAC	......................	22M	22/22	100.0%	22/36	61.1%	0/22	0.0%	2288	22
+23	phiX2	+	3076	237	236	267	31	TGGTAATGGTGGTTTTCTTCATTGCATTCAG	HWI-EAS91_1_306UPAAXX	+	36	1	0	31	1	0	31	31	TGGTAATGGTGGTTTTCTTCATTTCATTCAG	.......................x.......	31M	30/31	96.8%	31/36	86.1%	0/31	0.0%	236	NA
+24	phiX2	+	3076	1420	1419	1443	24	AGAATCAGCGGTATGGCTCTTCTC	HWI-EAS91_1_306UPAAXX	+	36	1	0	24	1	0	24	24	AGAATCAGCGGTATGGCTCTTCTC	........................	24M	24/24	100.0%	24/36	66.7%	0/24	0.0%	1419	NA
+25	phiX1	+	2310	2286	2285	2310	25	AAAAGATTGAGTGTGAGGTTATAAC	HWI-EAS91_1_306UPAAXX	-	36	1	0	25	12	11	36	25	AAAAGATTGAGTGTGAGGTTATAAC	.........................	25M	25/25	100.0%	25/36	69.4%	0/25	0.0%	2285	25
+25	phiX2	+	3076	188	187	212	25	CTAAAGCTACATCGTCAACGTTATA	HWI-EAS91_1_306UPAAXX	-	36	12	11	36	1	0	25	25	CTAAAGCTACATCGTCAACGTTATA	.........................	25M	25/25	100.0%	25/36	69.4%	0/25	0.0%	176	NA
+25	phiX2	+	3076	2345	2344	2369	25	TGATATTGGTCGTATGGTTCTTGCT	HWI-EAS91_1_306UPAAXX	+	36	1	0	25	1	0	25	25	TGATATTGGTCGTATGGTTCTTGCT	.........................	25M	25/25	100.0%	25/36	69.4%	0/25	0.0%	2344	NA
+25	phiX2	+	3076	517	516	549	33	ATGGTTTGGTCTAACTTTACCGCTACTAAATGC	HWI-EAS91_1_306UPAAXX	-	36	4	3	36	1	0	33	33	ATGGTTTGGTCAAACTTTACCGCTACTAAATGC	...........x.....................	33M	32/33	97.0%	33/36	91.7%	0/33	0.0%	513	NA
+25	phiX2	+	3076	575	574	607	33	TTATTAAAGAGATTATTTGTCTCCAGCCACTTA	HWI-EAS91_1_306UPAAXX	+	36	1	0	33	1	0	33	33	TTATTAAAGAGATTATTTTTCTCCAGCCACTTA	..................x..............	33M	32/33	97.0%	33/36	91.7%	0/33	0.0%	574	NA
+26	phiX1	+	2310	1139	1138	1172	34	GTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTG	HWI-EAS91_1_306UPAAXX	+	36	1	0	34	1	0	34	34	GTTGGCGCTCTCCGTCTTTCTCCATTTCGTCGTG	..........................x.......	34M	33/34	97.1%	34/36	94.4%	0/34	0.0%	1138	NA
+26	phiX1	+	2310	664	663	689	26	AAACGGCCTGTCTCATCATGGAAGGC	HWI-EAS91_1_306UPAAXX	-	36	11	10	36	1	0	26	26	AAACGGCCTGTCTCATCATGGAAGGC	..........................	26M	26/26	100.0%	26/36	72.2%	0/26	0.0%	653	NA
+26	phiX1	+	2310	664	663	689	26	AAACGGCCTGTCTCATCATGGAAGGC	HWI-EAS91_1_306UPAAXX	-	36	11	10	36	1	0	26	26	AAACGGCCTGTCTCATCATGGAAGGC	..........................	26M	26/26	100.0%	26/36	72.2%	0/26	0.0%	653	NA
+26	phiX2	+	3076	1472	1471	1497	26	TAATGTCGTCACTGATGCTGCTTCTG	HWI-EAS91_1_306UPAAXX	+	36	1	0	26	1	0	26	26	TAATGTCGTCACTGATGCTGCTTCTG	..........................	26M	26/26	100.0%	26/36	72.2%	0/26	0.0%	1471	NA
+26	phiX2	+	3076	1726	1725	1751	26	GTATCGAGGCTCTTAAACCTGCTATT	HWI-EAS91_1_306UPAAXX	+	36	1	0	26	1	0	26	26	GTATCGAGGCTCTTAAACCTGCTATT	..........................	26M	26/26	100.0%	26/36	72.2%	0/26	0.0%	1725	NA
+27	phiX1	+	2310	558	557	584	27	GCTTGCGTTTATGGTACGCTGGACTTT	HWI-EAS91_1_306UPAAXX	+	36	1	0	27	1	0	27	27	GCTTGCGTTTATGGTACGCTGGACTTT	...........................	27M	27/27	100.0%	27/36	75.0%	0/27	0.0%	557	NA
+27	phiX1	+	2310	571	570	605	35	GTACGCTGGACTTTGTGGGATACCCTCGCTTTCCT	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	GTACGCTGTACTTTGTGGGATACCCTCGCTTTCCT	........x..........................	35M	34/35	97.1%	35/36	97.2%	0/35	0.0%	570	NA
+27	phiX2	+	3076	1911	1910	1937	27	TCTGACGTTCGTGATGAGTTTGTATCT	HWI-EAS91_1_306UPAAXX	+	36	1	0	27	1	0	27	27	TCTGACGTTCGTGATGAGTTTGTATCT	...........................	27M	27/27	100.0%	27/36	75.0%	0/27	0.0%	1910	NA
+27	phiX2	+	3076	2346	2345	2372	27	GATATTGGTCGTATGGTTCTTGCTGCC	HWI-EAS91_1_306UPAAXX	+	36	1	0	27	1	0	27	27	GATATTGGTCGTATGGTTCTTGCTGCC	...........................	27M	27/27	100.0%	27/36	75.0%	0/27	0.0%	2345	NA
+27	phiX2	+	3076	2362	2361	2388	27	TTCTTGCTGCCGAGGGTCGCAAGGCTA	HWI-EAS91_1_306UPAAXX	+	36	1	0	27	1	0	27	27	TTCTTGCTGCCGAGGGTCGCAAGGCTA	...........................	27M	27/27	100.0%	27/36	75.0%	0/27	0.0%	2361	NA
+27	phiX2	+	3076	2457	2456	2491	35	CATTTCCATGCGGTGCACTTTATGCGGACACTTCC	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	CATTTCCATGCGGTGCATTTTATGCGGACACTTCC	.................:.................	35M	34/35	97.1%	35/36	97.2%	0/35	0.0%	2455	NA
+28	phiX1	+	2310	1626	1625	1661	36	GTGATTACTTCATGCAGCGTTACCATGATGTTATTT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GTGATTACTTCATGCAGCGTTACCGTGATGTTATTT	........................:...........	36M	35/36	97.2%	36/36	100.0%	0/36	0.0%	1625	NA
+28	phiX1	+	2310	1982	1981	2017	36	GAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGAT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GAAATTTCTATGAATGATGTTTTCCGTTCTGGTGAT	..............x.....................	36M	35/36	97.2%	36/36	100.0%	0/36	0.0%	1981	NA
+28	phiX1	+	2310	2148	2147	2183	36	GCGTACTTATTCGCCACCATGATTATGACCAGTGTT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCGTACTTATTCGCCACCATGATTATTACCAGTGTT	..........................x.........	36M	35/36	97.2%	36/36	100.0%	0/36	0.0%	2147	NA
+28	phiX1	+	2310	2222	2221	2257	36	AAATTTAATGTGACCGTTTATCGCAATCTGCCGACC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	AAATTTAATGTGAACGTTTATCGCAATCTGCCGACC	.............x......................	36M	35/36	97.2%	36/36	100.0%	0/36	0.0%	2221	NA
+28	phiX2	+	3076	171	170	206	36	ACCTGTTTTACAGACACCTAAAGCTACATCGTCAAC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	ACCTGTTTTAAAGACACCTAAAGCTACATCGTCAAC	..........x.........................	36M	35/36	97.2%	36/36	100.0%	0/36	0.0%	170	NA
+28	phiX2	+	3076	1788	1787	1823	36	ATGCTTGGCTTCCATAAGCAGATGGATAACCGCATC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	ATGCTTGGCTTCAATAAGCAGATGGATAACCGCATC	............x.......................	36M	35/36	97.2%	36/36	100.0%	0/36	0.0%	1787	NA
+28	phiX2	+	3076	1918	1917	1945	28	TTCGTGATGAGTTTGTATCTGTTACTGA	HWI-EAS91_1_306UPAAXX	+	36	1	0	28	1	0	28	28	TTCGTGATGAGTTTGTATCTGTTACTGA	............................	28M	28/28	100.0%	28/36	77.8%	0/28	0.0%	1917	NA
+28	phiX2	+	3076	2189	2188	2224	36	GAAATCGCGTAGAGGCTTTGCTATTCAGCGTTTGAT	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GAAATCGCGTAGAGGCTTTACTATTCAGCGTTTGAT	...................:................	36M	35/36	97.2%	36/36	100.0%	0/36	0.0%	2188	NA
+28	phiX2	+	3076	2325	2324	2352	28	GCTTTGCGTGACTATTTTCGTGATATTG	HWI-EAS91_1_306UPAAXX	+	36	1	0	28	1	0	28	28	GCTTTGCGTGACTATTTTCGTGATATTG	............................	28M	28/28	100.0%	28/36	77.8%	0/28	0.0%	2324	NA
+28	phiX2	+	3076	2327	2326	2362	36	TTTGCGTGACTATTTTCGTGATATTGGTCGTATGGT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TTTGCGTGACTATTTTCGTGATATTGTTCGTATGGT	..........................x.........	36M	35/36	97.2%	36/36	100.0%	0/36	0.0%	2326	NA
+28	phiX2	+	3076	2465	2464	2500	36	TGCGGTGCACTTTATGCGGACACTTCCTACAGGTAG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TGCGGTGCATTTTATGCGGACACTTCCTACAGGTAG	.........:..........................	36M	35/36	97.2%	36/36	100.0%	0/36	0.0%	2464	NA
+28	phiX2	+	3076	2507	2506	2542	36	CCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CCCTAATTTGGGTCGTCGGGTACGCAATCGCCGCCA	.........x..........................	36M	35/36	97.2%	36/36	100.0%	0/36	0.0%	2506	NA
+28	phiX2	+	3076	646	645	681	36	TTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAAT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TTGCTTCTGCTCTTGCTTGTGGCGCCATGTCTAAAT	.................x..................	36M	35/36	97.2%	36/36	100.0%	0/36	0.0%	645	NA
+28	phiX2	+	3076	660	659	695	36	GCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCTGGTGGCGCCATGTCTAAATTTTTTGGAGGCGGT	.......................x............	36M	35/36	97.2%	36/36	100.0%	0/36	0.0%	659	NA
+28	phiX2	+	3076	789	788	824	36	CAAGGCTCTAATGTTCCTAACCCTGATGAGGCCGCC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CAAGGCTCTAATGTTCCTAACCCTGATGGGGCCGCC	............................:.......	36M	35/36	97.2%	36/36	100.0%	0/36	0.0%	788	NA
+29	phiX1	+	2310	598	597	626	29	GCTTTCCTGCTCCTGTTGAGTTTATTGCT	HWI-EAS91_1_306UPAAXX	+	36	1	0	29	1	0	29	29	GCTTTCCTGCTCCTGTTGAGTTTATTGCT	.............................	29M	29/29	100.0%	29/36	80.6%	0/29	0.0%	597	NA
+29	phiX2	+	3076	1176	1175	1204	29	CAGAATACGAAAGACCAGGTATATGCACA	HWI-EAS91_1_306UPAAXX	-	36	8	7	36	1	0	29	29	CAGAATACGAAAGACCAGGTATATGCACA	.............................	29M	29/29	100.0%	29/36	80.6%	0/29	0.0%	1168	NA
+29	phiX2	+	3076	1518	1517	1546	29	GGTATTGATAAAGCTGTTGCCGATACTTG	HWI-EAS91_1_306UPAAXX	+	36	1	0	29	1	0	29	29	GGTATTGATAAAGCTGTTGCCGATACTTG	.............................	29M	29/29	100.0%	29/36	80.6%	0/29	0.0%	1517	NA
+29	phiX2	+	3076	2282	2281	2310	29	GTTGGCTGACGACCGATTAGAGGCGTTTT	HWI-EAS91_1_306UPAAXX	+	36	1	0	29	1	0	29	29	GTTGGCTGACGACCGATTAGAGGCGTTTT	.............................	29M	29/29	100.0%	29/36	80.6%	0/29	0.0%	2281	NA
+29	phiX2	+	3076	3048	3047	3076	29	ATAAAAATGATTGGCGTATCCAACCTGCA	HWI-EAS91_1_306UPAAXX	+	36	1	0	29	1	0	29	29	ATAAAAATGATTGGCGTATCCAACCTGCA	.............................	29M	29/29	100.0%	29/36	80.6%	0/29	0.0%	3047	29
+29	phiX2	+	3076	953	952	981	29	TGATAAAGGAAAGGATACTCGTGATTATC	HWI-EAS91_1_306UPAAXX	-	36	8	7	36	1	0	29	29	TGATAAAGGAAAGGATACTCGTGATTATC	.............................	29M	29/29	100.0%	29/36	80.6%	0/29	0.0%	945	NA
+30	phiX1	+	2310	1112	1111	1141	30	GCTGGCGACTCCTTCGAGATGGACGCCGTT	HWI-EAS91_1_306UPAAXX	+	36	1	0	30	1	0	30	30	GCTGGCGACTCCTTCGAGATGGACGCCGTT	..............................	30M	30/30	100.0%	30/36	83.3%	0/30	0.0%	1111	NA
+30	phiX1	+	2310	1702	1701	1731	30	TCCTTTACTTGTCATGCGCTCTAATCTCTG	HWI-EAS91_1_306UPAAXX	+	36	1	0	30	1	0	30	30	TCCTTTACTTGTCATGCGCTCTAATCTCTG	..............................	30M	30/30	100.0%	30/36	83.3%	0/30	0.0%	1701	NA
+30	phiX1	+	2310	624	623	653	30	GCTGCCGTCATTGCTTATTATGTTCATCCC	HWI-EAS91_1_306UPAAXX	+	36	1	0	30	1	0	30	30	GCTGCCGTCATTGCTTATTATGTTCATCCC	..............................	30M	30/30	100.0%	30/36	83.3%	0/30	0.0%	623	NA
+30	phiX1	+	2310	638	637	667	30	TTATTATGTTCATCCCGTCAACATTCAAAC	HWI-EAS91_1_306UPAAXX	+	36	1	0	30	1	0	30	30	TTATTATGTTCATCCCGTCAACATTCAAAC	..............................	30M	30/30	100.0%	30/36	83.3%	0/30	0.0%	637	NA
+30	phiX1	+	2310	81	80	110	30	GAATTACTACTGCTTGTTTACGAATTAAAT	HWI-EAS91_1_306UPAAXX	+	36	1	0	30	1	0	30	30	GAATTACTACTGCTTGTTTACGAATTAAAT	..............................	30M	30/30	100.0%	30/36	83.3%	0/30	0.0%	80	NA
+30	phiX1	+	2310	989	988	1018	30	TGAGGATAAATTATGTCTAATATTCAAACT	HWI-EAS91_1_306UPAAXX	+	36	1	0	30	1	0	30	30	TGAGGATAAATTATGTCTAATATTCAAACT	..............................	30M	30/30	100.0%	30/36	83.3%	0/30	0.0%	988	NA
+30	phiX2	+	3076	1468	1467	1497	30	TTTCTAATGTCGTCACTGATGCTGCTTCTG	HWI-EAS91_1_306UPAAXX	+	36	1	0	30	1	0	30	30	TTTCTAATGTCGTCACTGATGCTGCTTCTG	..............................	30M	30/30	100.0%	30/36	83.3%	0/30	0.0%	1467	NA
+30	phiX2	+	3076	1500	1499	1529	30	GTGGTTGATATTTTTCATGGTATTGATAAA	HWI-EAS91_1_306UPAAXX	+	36	1	0	30	1	0	30	30	GTGGTTGATATTTTTCATGGTATTGATAAA	..............................	30M	30/30	100.0%	30/36	83.3%	0/30	0.0%	1499	NA
+30	phiX2	+	3076	1863	1862	1892	30	GTTGAGTTCGATAATGGTGATATGTATGTT	HWI-EAS91_1_306UPAAXX	+	36	1	0	30	1	0	30	30	GTTGAGTTCGATAATGGTGATATGTATGTT	..............................	30M	30/30	100.0%	30/36	83.3%	0/30	0.0%	1862	NA
+30	phiX2	+	3076	2020	2019	2055	36	GCCCCGAAGGGGACGAAAAATGGTTTTTAGAGAACG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCCCCGAAGGGGACNANAAATGGTTTTTAGAGAACG	..............X.X...................	36M	34/34	100.0%	36/36	100.0%	0/36	0.0%	2019	NA
+30	phiX2	+	3076	2444	2443	2473	30	TAATGGCCGTCTTCATTTCCATGCGGTGCA	HWI-EAS91_1_306UPAAXX	-	36	1	0	30	7	6	36	30	TAATGGCCGTCTTCATTTCCATGCGGTGCA	..............................	30M	30/30	100.0%	30/36	83.3%	0/30	0.0%	2443	NA
+30	phiX2	+	3076	502	501	531	30	GTTTATGTTGGTTTCATGGTTTGGTCTAAC	HWI-EAS91_1_306UPAAXX	-	36	7	6	36	1	0	30	30	GTTTATGTTGGTTTCATGGTTTGGTCTAAC	..............................	30M	30/30	100.0%	30/36	83.3%	0/30	0.0%	495	NA
+30	phiX2	+	3076	858	857	887	30	GGTAAAGGACTTCTTGAAGGTACGTTGCAG	HWI-EAS91_1_306UPAAXX	+	36	1	0	30	1	0	30	30	GGTAAAGGACTTCTTGAAGGTACGTTGCAG	..............................	30M	30/30	100.0%	30/36	83.3%	0/30	0.0%	857	NA
+31	phiX1	+	2310	1346	1345	1376	31	GATACCAATAAAATCCCTAAGCATTTGTTTC	HWI-EAS91_1_306UPAAXX	+	36	1	0	31	1	0	31	31	GATACCAATAAAATCCCTAAGCATTTGTTTC	...............................	31M	31/31	100.0%	31/36	86.1%	0/31	0.0%	1345	NA
+31	phiX1	+	2310	1807	1806	1837	31	TAAACATTCTGTGCCGCGTTTCTTTGTTCCT	HWI-EAS91_1_306UPAAXX	+	36	1	0	31	1	0	31	31	TAAACATTCTGTGCCGCGTTTCTTTGTTCCT	...............................	31M	31/31	100.0%	31/36	86.1%	0/31	0.0%	1806	NA
+31	phiX2	+	3076	1022	1021	1052	31	TGGTGCTGATGCTTCCTCTGCTGGTATGGTT	HWI-EAS91_1_306UPAAXX	+	36	1	0	31	1	0	31	31	TGGTGCTGATGCTTCCTCTGCTGGTATGGTT	...............................	31M	31/31	100.0%	31/36	86.1%	0/31	0.0%	1021	NA
+31	phiX2	+	3076	198	197	228	31	ATCGTCAACGTTATATTTTGATAGTTTGACG	HWI-EAS91_1_306UPAAXX	+	36	1	0	31	1	0	31	31	ATCGTCAACGTTATATTTTGATAGTTTGACG	...............................	31M	31/31	100.0%	31/36	86.1%	0/31	0.0%	197	NA
+31	phiX2	+	3076	2064	2063	2094	31	GTTACGCAGTTTTGCCGCAAGCTGGCTGCTG	HWI-EAS91_1_306UPAAXX	+	36	1	0	31	1	0	31	31	GTTACGCAGTTTTGCCGCAAGCTGGCTGCTG	...............................	31M	31/31	100.0%	31/36	86.1%	0/31	0.0%	2063	NA
+31	phiX2	+	3076	2443	2442	2473	31	CTAATGGCCGTCTTCATTTCCATGCGGTGCA	HWI-EAS91_1_306UPAAXX	-	36	1	0	31	6	5	36	31	CTAATGGCCGTCTTCATTTCCATGCGGTGCA	...............................	31M	31/31	100.0%	31/36	86.1%	0/31	0.0%	2442	NA
+31	phiX2	+	3076	2705	2704	2735	31	TAAATACGTTAACAAAAAGTCAGATATGGAC	HWI-EAS91_1_306UPAAXX	-	36	6	5	36	1	0	31	31	TAAATACGTTAACAAAAAGTCAGATATGGAC	...............................	31M	31/31	100.0%	31/36	86.1%	0/31	0.0%	2699	NA
+31	phiX2	+	3076	331	330	361	31	GCCGACCCTAAATTTTTTGCCTGTTTGGTTC	HWI-EAS91_1_306UPAAXX	+	36	1	0	31	1	0	31	31	GCCGACCCTAAATTTTTTGCCTGTTTGGTTC	...............................	31M	31/31	100.0%	31/36	86.1%	0/31	0.0%	330	NA
+32	phiX1	+	2310	1	0	32	32	GAGTTTTATCGCTTCCATGACGCAGAAGTTAA	HWI-EAS91_1_306UPAAXX	-	36	5	4	36	1	0	32	32	GAGTTTTATCGCTTCCATGACGCAGAAGTTAA	................................	32M	32/32	100.0%	32/36	88.9%	0/32	0.0%	-4	-32
+32	phiX1	+	2310	1266	1265	1297	32	GTGTTAATGCCACTCCTCTCCCGACTGTTAAC	HWI-EAS91_1_306UPAAXX	+	36	1	0	32	1	0	32	32	GTGTTAATGCCACTCCTCTCCCGACTGTTAAC	................................	32M	32/32	100.0%	32/36	88.9%	0/32	0.0%	1265	NA
+32	phiX1	+	2310	801	800	832	32	GCAGAAGAAAACGTGCGTCAAAAATTACGTGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	32	5	4	36	32	GCAGAAGAAAACGTGCGTCAAAAATTACGTGC	................................	32M	32/32	100.0%	32/36	88.9%	0/32	0.0%	800	NA
+32	phiX2	+	3076	1380	1379	1411	32	AAGGTTAGTGCTGAGGTTGACTTAGTTCATCA	HWI-EAS91_1_306UPAAXX	+	36	1	0	32	1	0	32	32	AAGGTTAGTGCTGAGGTTGACTTAGTTCATCA	................................	32M	32/32	100.0%	32/36	88.9%	0/32	0.0%	1379	NA
+32	phiX2	+	3076	2145	2144	2176	32	GGTATTAAGGATGAGTGTTCAAGATTGCTGGA	HWI-EAS91_1_306UPAAXX	+	36	1	0	32	1	0	32	32	GGTATTAAGGATGAGTGTTCAAGATTGCTGGA	................................	32M	32/32	100.0%	32/36	88.9%	0/32	0.0%	2144	NA
+32	phiX2	+	3076	352	351	383	32	TGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCC	HWI-EAS91_1_306UPAAXX	+	36	1	0	32	1	0	32	32	TGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCC	................................	32M	32/32	100.0%	32/36	88.9%	0/32	0.0%	351	NA
+33	phiX1	+	2310	1203	1202	1235	33	TTACTTTTTATGTCCCTCATCGTCACGTTTATG	HWI-EAS91_1_306UPAAXX	+	36	1	0	33	1	0	33	33	TTACTTTTTATGTCCCTCATCGTCACGTTTATG	.................................	33M	33/33	100.0%	33/36	91.7%	0/33	0.0%	1202	NA
+33	phiX1	+	2310	1313	1312	1345	33	GACCATGCCGCTTTTCTTGGCACGATTAACCCT	HWI-EAS91_1_306UPAAXX	+	36	1	0	33	1	0	33	33	GACCATGCCGCTTTTCTTGGCACGATTAACCCT	.................................	33M	33/33	100.0%	33/36	91.7%	0/33	0.0%	1312	NA
+33	phiX1	+	2310	1379	1378	1411	33	GGTTATTTGAATATCTATAACAACTATTTTAAA	HWI-EAS91_1_306UPAAXX	+	36	1	0	33	1	0	33	33	GGTTATTTGAATATCTATAACAACTATTTTAAA	.................................	33M	33/33	100.0%	33/36	91.7%	0/33	0.0%	1378	NA
+33	phiX1	+	2310	1544	1543	1576	33	CGCCAAATGACGACTTCTACCACATCTATTGAC	HWI-EAS91_1_306UPAAXX	-	36	4	3	36	1	0	33	33	CGCCAAATGACGACTTCTACCACATCTATTGAC	.................................	33M	33/33	100.0%	33/36	91.7%	0/33	0.0%	1540	NA
+33	phiX1	+	2310	636	635	668	33	GCTTATTATGTTCATCCCGTCAACATTCAAACG	HWI-EAS91_1_306UPAAXX	+	36	1	0	33	1	0	33	33	GCTTATTATGTTCATCCCGTCAACATTCAAACG	.................................	33M	33/33	100.0%	33/36	91.7%	0/33	0.0%	635	NA
+33	phiX2	+	3076	1470	1469	1502	33	TCTAATGTCGTCACTGATGCTGCTTCTGGTGTG	HWI-EAS91_1_306UPAAXX	+	36	1	0	33	1	0	33	33	TCTAATGTCGTCACTGATGCTGCTTCTGGTGTG	.................................	33M	33/33	100.0%	33/36	91.7%	0/33	0.0%	1469	NA
+33	phiX2	+	3076	1662	1661	1694	33	GGCTTTTTTATGGTTCGTTCTTATTACCCTTCT	HWI-EAS91_1_306UPAAXX	+	36	1	0	33	1	0	33	33	GGCTTTTTTATGGTTCGTTCTTATTACCCTTCT	.................................	33M	33/33	100.0%	33/36	91.7%	0/33	0.0%	1661	NA
+33	phiX2	+	3076	1864	1863	1896	33	TTGAGTTCGATAATGGTGATATGTATGTTGACG	HWI-EAS91_1_306UPAAXX	+	36	1	0	33	1	0	33	33	TTGAGTTCGATAATGGTGATATGTATGTTGACG	.................................	33M	33/33	100.0%	33/36	91.7%	0/33	0.0%	1863	NA
+33	phiX2	+	3076	2253	2252	2285	33	GGTTGGTTTATCGTTTTTGACACTCTCACGTTG	HWI-EAS91_1_306UPAAXX	+	36	1	0	33	1	0	33	33	GGTTGGTTTATCGTTTTTGACACTCTCACGTTG	.................................	33M	33/33	100.0%	33/36	91.7%	0/33	0.0%	2252	NA
+33	phiX2	+	3076	2606	2605	2638	33	GCAGGACGCTTTTTCACGTTCTGGTTGGTTGTG	HWI-EAS91_1_306UPAAXX	+	36	1	0	33	1	0	33	33	GCAGGACGCTTTTTCACGTTCTGGTTGGTTGTG	.................................	33M	33/33	100.0%	33/36	91.7%	0/33	0.0%	2605	NA
+33	phiX2	+	3076	345	344	377	33	TTTTGCCTGTTTGGTTCGCTTTGAGTCTTCTTC	HWI-EAS91_1_306UPAAXX	+	36	1	0	33	1	0	33	33	TTTTGCCTGTTTGGTTCGCTTTGAGTCTTCTTC	.................................	33M	33/33	100.0%	33/36	91.7%	0/33	0.0%	344	NA
+33	phiX2	+	3076	428	427	460	33	GCCATGATGGTGGTTATTATACCGTCAAGGACT	HWI-EAS91_1_306UPAAXX	+	36	1	0	33	1	0	33	33	GCCATGATGGTGGTTATTATACCGTCAAGGACT	.................................	33M	33/33	100.0%	33/36	91.7%	0/33	0.0%	427	NA
+33	phiX2	+	3076	572	571	604	33	AGGTTATTAAAGAGATTATTTGTCTCCAGCCAC	HWI-EAS91_1_306UPAAXX	-	36	4	3	36	1	0	33	33	AGGTTATTAAAGAGATTATTTGTCTCCAGCCAC	.................................	33M	33/33	100.0%	33/36	91.7%	0/33	0.0%	568	NA
+33	phiX2	+	3076	884	883	916	33	GCAGGCTGGCACTTCTGCCGTTTCTGATAAGTT	HWI-EAS91_1_306UPAAXX	+	36	1	0	33	1	0	33	33	GCAGGCTGGCACTTCTGCCGTTTCTGATAAGTT	.................................	33M	33/33	100.0%	33/36	91.7%	0/33	0.0%	883	NA
+34	phiX1	+	2310	1180	1179	1213	34	TATTGACTCTACTGTAGACATTTTTACTTTTTAT	HWI-EAS91_1_306UPAAXX	+	36	1	0	34	1	0	34	34	TATTGACTCTACTGTAGACATTTTTACTTTTTAT	..................................	34M	34/34	100.0%	34/36	94.4%	0/34	0.0%	1179	NA
+34	phiX1	+	2310	1180	1179	1213	34	TATTGACTCTACTGTAGACATTTTTACTTTTTAT	HWI-EAS91_1_306UPAAXX	+	36	1	0	34	1	0	34	34	TATTGACTCTACTGTAGACATTTTTACTTTTTAT	..................................	34M	34/34	100.0%	34/36	94.4%	0/34	0.0%	1179	NA
+34	phiX1	+	2310	1254	1253	1287	34	TCATGAAGGATGGTGTTAATGCCACTCCTCTCCC	HWI-EAS91_1_306UPAAXX	-	36	3	2	36	1	0	34	34	TCATGAAGGATGGTGTTAATGCCACTCCTCTCCC	..................................	34M	34/34	100.0%	34/36	94.4%	0/34	0.0%	1251	NA
+34	phiX1	+	2310	320	319	353	34	TTGACATTTTAAAAGAGCGTGGATTACTATCTGA	HWI-EAS91_1_306UPAAXX	+	36	1	0	34	1	0	34	34	TTGACATTTTAAAAGAGCGTGGATTACTATCTGA	..................................	34M	34/34	100.0%	34/36	94.4%	0/34	0.0%	319	NA
+34	phiX1	+	2310	582	581	615	34	TTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTG	HWI-EAS91_1_306UPAAXX	+	36	1	0	34	1	0	34	34	TTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTG	..................................	34M	34/34	100.0%	34/36	94.4%	0/34	0.0%	581	NA
+34	phiX2	+	3076	1826	1825	1859	34	GCTCTTGGAAGAGATTCTGTCTTTTCGTATGCAG	HWI-EAS91_1_306UPAAXX	+	36	1	0	34	1	0	34	34	GCTCTTGGAAGAGATTCTGTCTTTTCGTATGCAG	..................................	34M	34/34	100.0%	34/36	94.4%	0/34	0.0%	1825	NA
+34	phiX2	+	3076	201	200	234	34	GTCAACGTTATATTTTGATAGTTTGACGGTTAAT	HWI-EAS91_1_306UPAAXX	+	36	1	0	34	1	0	34	34	GTCAACGTTATATTTTGATAGTTTGACGGTTAAT	..................................	34M	34/34	100.0%	34/36	94.4%	0/34	0.0%	200	NA
+34	phiX2	+	3076	2034	2033	2067	34	GAAAAATGGTTTTTAGAGAACGAGAAGACGGTTA	HWI-EAS91_1_306UPAAXX	-	36	3	2	36	1	0	34	34	GAAAAATGGTTTTTAGAGAACGAGAAGACGGTTA	..................................	34M	34/34	100.0%	34/36	94.4%	0/34	0.0%	2031	NA
+34	phiX2	+	3076	2174	2173	2207	34	GGAGGCCTCCACTATGAAATCGCGTAGAGGCTTT	HWI-EAS91_1_306UPAAXX	-	36	1	0	34	3	2	36	34	GGAGGCCTCCACTATGAAATCGCGTAGAGGCTTT	..................................	34M	34/34	100.0%	34/36	94.4%	0/34	0.0%	2173	NA
+34	phiX2	+	3076	2296	2295	2329	34	GATTAGAGGCGTTTTATGATAATCCCAATGCTTT	HWI-EAS91_1_306UPAAXX	+	36	1	0	34	1	0	34	34	GATTAGAGGCGTTTTATGATAATCCCAATGCTTT	..................................	34M	34/34	100.0%	34/36	94.4%	0/34	0.0%	2295	NA
+34	phiX2	+	3076	2475	2474	2508	34	TTTATGCGGACACTTCCTACAGGTAGCGTTGACC	HWI-EAS91_1_306UPAAXX	-	36	3	2	36	1	0	34	34	TTTATGCGGACACTTCCTACAGGTAGCGTTGACC	..................................	34M	34/34	100.0%	34/36	94.4%	0/34	0.0%	2472	NA
+35	phiX1	+	2310	10	9	44	35	CGCTTCCATGACGCAGAAGTTAACACTTTCGGATA	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	CGCTTCCATGACGCAGAAGTTAACACTTTCGGATA	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	8	NA
+35	phiX1	+	2310	1045	1044	1079	35	TTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTC	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	TTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTC	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	1044	NA
+35	phiX1	+	2310	1067	1066	1101	35	GGTCAGATTGGTCGTCTTATTACCATTTCAACTAC	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	GGTCAGATTGGTCGTCTTATTACCATTTCAACTAC	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	1065	NA
+35	phiX1	+	2310	1093	1092	1127	35	TTCAACTACTCCGGTTATCGCTGGCGACTCCTTCG	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	TTCAACTACTCCGGTTATCGCTGGCGACTCCTTCG	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	1092	NA
+35	phiX1	+	2310	1165	1164	1199	35	GCGTCGTGGCCTTGCTATTGACTCTACTGTAGACA	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	GCGTCGTGGCCTTGCTATTGACTCTACTGTAGACA	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	1163	NA
+35	phiX1	+	2310	1172	1171	1206	35	GGCCTTGCTATTGACTCTACTGTAGACATTTTTAC	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	GGCCTTGCTATTGACTCTACTGTAGACATTTTTAC	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	1170	NA
+35	phiX1	+	2310	1249	1248	1283	35	TAAGTTCATGAAGGATGGTGTTAATGCCACTCCTC	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	TAAGTTCATGAAGGATGGTGTTAATGCCACTCCTC	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	1247	NA
+35	phiX1	+	2310	1274	1273	1308	35	GCCACTCCTCTCCCGACTGTTAACACTACTGGTTA	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	GCCACTCCTCTCCCGACTGTTAACACTACTGGTTA	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	1272	NA
+35	phiX1	+	2310	1294	1293	1328	35	TAACACTACTGGTTATATTGACCATGCCGCTTTTC	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	TAACACTACTGGTTATATTGACCATGCCGCTTTTC	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	1292	NA
+35	phiX1	+	2310	1508	1507	1542	35	TGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTC	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	TGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTC	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	1506	NA
+35	phiX1	+	2310	1521	1520	1555	35	TTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACG	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	TTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACG	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	1520	NA
+35	phiX1	+	2310	1552	1551	1586	35	GACGACTTCTACCACATCTATTGACATTATGGGTC	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	GACGACTTCTACCACATCTATTGACATTATGGGTC	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	1550	NA
+35	phiX1	+	2310	1579	1578	1613	35	TATGGGTCTGCAAGCTGCTTATGCTAATTTGCATA	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	TATGGGTCTGCAAGCTGCTTATGCTAATTTGCATA	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	1577	NA
+35	phiX1	+	2310	1613	1612	1647	35	ACTGACCAAGAACGTGATTACTTCATGCAGCGTTA	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	ACTGACCAAGAACGTGATTACTTCATGCAGCGTTA	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	1611	NA
+35	phiX1	+	2310	1877	1876	1911	35	CCGCCTACTGCGACTAAAGAGATTCAGTACCTTAA	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	CCGCCTACTGCGACTAAAGAGATTCAGTACCTTAA	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	1875	NA
+35	phiX1	+	2310	1940	1939	1974	35	ATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCC	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	ATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCC	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	1938	NA
+35	phiX1	+	2310	195	194	229	35	TCAACTAACGATTCTGTCAAAAACTGACGCGTTGG	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	TCAACTAACGATTCTGTCAAAAACTGACGCGTTGG	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	194	NA
+35	phiX1	+	2310	204	203	238	35	GATTCTGTCAAAAACTGACGCGTTGGATGAGGAGA	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	GATTCTGTCAAAAACTGACGCGTTGGATGAGGAGA	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	203	NA
+35	phiX1	+	2310	2112	2111	2146	35	TCATTCAGGAACCGCCTTCTGGTGATTTGCAAGAA	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	TCATTCAGGAACCGCCTTCTGGTGATTTGCAAGAA	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	2110	NA
+35	phiX1	+	2310	2212	2211	2246	35	TAGTCAGGTTAAATTTAATGTGACCGTTTATCGCA	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	TAGTCAGGTTAAATTTAATGTGACCGTTTATCGCA	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	2211	NA
+35	phiX1	+	2310	2254	2253	2288	35	GACCACTCGCGATTCAATCATGACTTCGTGATAAA	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	GACCACTCGCGATTCAATCATGACTTCGTGATAAA	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	2253	NA
+35	phiX1	+	2310	358	357	392	35	GATGCTGTTCAACCACTAATAGGTAAGAAATCATG	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	GATGCTGTTCAACCACTAATAGGTAAGAAATCATG	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	357	NA
+35	phiX1	+	2310	411	410	445	35	TCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAA	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	TCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAA	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	410	NA
+35	phiX1	+	2310	521	520	555	35	TGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTG	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	TGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTG	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	520	NA
+35	phiX1	+	2310	527	526	561	35	TGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTT	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	TGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTT	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	526	NA
+35	phiX1	+	2310	540	539	574	35	GCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGTAC	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	GCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGTAC	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	538	NA
+35	phiX1	+	2310	614	613	648	35	TGAGTTTATTGCTGCCGTCATTGCTTATTATGTTC	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	TGAGTTTATTGCTGCCGTCATTGCTTATTATGTTC	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	613	NA
+35	phiX1	+	2310	646	645	680	35	TTCATCCCGTCAACATTCAAACGGCCTGTCTCATC	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	TTCATCCCGTCAACATTCAAACGGCCTGTCTCATC	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	645	NA
+35	phiX1	+	2310	680	679	714	35	CATGGAAGGCGCTGAATTTACGGAAAACATTATTA	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	CATGGAAGGCGCTGAATTTACGGAAAACATTATTA	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	678	NA
+35	phiX1	+	2310	680	679	714	35	CATGGAAGGCGCTGAATTTACGGAAAACATTATTA	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	CATGGAAGGCGCTGAATTTACGGAAAACATTATTA	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	678	NA
+35	phiX1	+	2310	789	788	823	35	GTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAA	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	GTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAA	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	788	NA
+35	phiX1	+	2310	798	797	832	35	GACGCAGAAGAAAACGTGCGTCAAAAATTACGTGC	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	GACGCAGAAGAAAACGTGCGTCAAAAATTACGTGC	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	796	NA
+35	phiX2	+	3076	11	10	45	35	TAAAAATTTTAATTTTTGCCGCTGAGGGGTTGACC	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	TAAAAATTTTAATTTTTGCCGCTGAGGGGTTGACC	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	10	NA
+35	phiX2	+	3076	1124	1123	1158	35	GCAAAATGAGACTCAAAAAGAGATTGCTGGCATTC	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	GCAAAATGAGACTCAAAAAGAGATTGCTGGCATTC	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	1122	NA
+35	phiX2	+	3076	1498	1497	1532	35	GTGTGGTTGATATTTTTCATGGTATTGATAAAGCT	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	GTGTGGTTGATATTTTTCATGGTATTGATAAAGCT	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	1497	NA
+35	phiX2	+	3076	1507	1506	1541	35	ATATTTTTCATGGTATTGATAAAGCTGTTGCCGAT	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	ATATTTTTCATGGTATTGATAAAGCTGTTGCCGAT	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	1506	NA
+35	phiX2	+	3076	1524	1523	1558	35	GATAAAGCTGTTGCCGATACTTGGAACAATTTCTG	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	GATAAAGCTGTTGCCGATACTTGGAACAATTTCTG	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	1523	NA
+35	phiX2	+	3076	1542	1541	1576	35	ACTTGGAACAATTTCTGGAAAGACGGTAAAGCTGA	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	ACTTGGAACAATTTCTGGAAAGACGGTAAAGCTGA	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	1540	NA
+35	phiX2	+	3076	157	156	191	35	CCAGCTTCTTCGGCACCTGTTTTACAGACACCTAA	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	CCAGCTTCTTCGGCACCTGTTTTACAGACACCTAA	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	155	NA
+35	phiX2	+	3076	1778	1777	1812	35	TCAATCCCCAATGCTTGGCTTCCATAAGCAGATGG	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	TCAATCCCCAATGCTTGGCTTCCATAAGCAGATGG	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	1777	NA
+35	phiX2	+	3076	1888	1887	1922	35	ATGTTGACGGCCATAAGGCTGCTTCTGACGTTCGT	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	ATGTTGACGGCCATAAGGCTGCTTCTGACGTTCGT	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	1886	NA
+35	phiX2	+	3076	1925	1924	1959	35	TGAGTTTGTATCTGTTACTGAGAAGTTAATGGATG	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	TGAGTTTGTATCTGTTACTGAGAAGTTAATGGATG	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	1924	NA
+35	phiX2	+	3076	1985	1984	2019	35	CCCCCAACTTGATATTAATAACACTATAGACCACC	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	CCCCCAACTTGATATTAATAACACTATAGACCACC	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	1983	NA
+35	phiX2	+	3076	1997	1996	2031	35	TATTAATAACACTATAGACCACCGCCCCGAAGGGG	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	TATTAATAACACTATAGACCACCGCCCCGAAGGGG	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	1996	NA
+35	phiX2	+	3076	2222	2221	2256	35	GATGAATGCAATGCGACAGGCTCATGCTGATGGTT	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	GATGAATGCAATGCGACAGGCTCATGCTGATGGTT	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	2220	NA
+35	phiX2	+	3076	2277	2276	2311	35	CTCACGTTGGCTGACGACCGATTAGAGGCGTTTTA	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	CTCACGTTGGCTGACGACCGATTAGAGGCGTTTTA	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	2275	NA
+35	phiX2	+	3076	2309	2308	2343	35	TTATGATAATCCCAATGCTTTGCGTGACTATTTTC	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	TTATGATAATCCCAATGCTTTGCGTGACTATTTTC	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	2308	NA
+35	phiX2	+	3076	2348	2347	2382	35	TATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCA	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	TATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCA	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	2347	NA
+35	phiX2	+	3076	2349	2348	2383	35	ATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCAA	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	ATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCAA	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	2347	NA
+35	phiX2	+	3076	2357	2356	2391	35	TATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAATG	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	TATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAATG	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	2356	NA
+35	phiX2	+	3076	2578	2577	2612	35	ACAGTATGCCCATCGCAGTTCGCTACACGCAGGAC	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	ACAGTATGCCCATCGCAGTTCGCTACACGCAGGAC	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	2576	NA
+35	phiX2	+	3076	2601	2600	2635	35	TACACGCAGGACGCTTTTTCACGTTCTGGTTGGTT	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	TACACGCAGGACGCTTTTTCACGTTCTGGTTGGTT	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	2600	NA
+35	phiX2	+	3076	2816	2815	2850	35	CAGAATCAGAATGAGCCGCAACTTCGGGATGAAAA	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	CAGAATCAGAATGAGCCGCAACTTCGGGATGAAAA	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	2814	NA
+35	phiX2	+	3076	2858	2857	2892	35	AATGACAAATCTGTCCACGGAGTGCTTAATCCAAC	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	AATGACAAATCTGTCCACGGAGTGCTTAATCCAAC	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	2856	NA
+35	phiX2	+	3076	2881	2880	2915	35	GCTTAATCCAACTTACCAAGCTGGGTTACGACGCG	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	GCTTAATCCAACTTACCAAGCTGGGTTACGACGCG	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	2880	NA
+35	phiX2	+	3076	393	392	427	35	CCCGACTGCCTATGATGTTTATCCTTTGAATGGTC	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	CCCGACTGCCTATGATGTTTATCCTTTGAATGGTC	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	391	NA
+35	phiX2	+	3076	420	419	454	35	GAATGGTCGCCATGATGGTGGTTATTATACCGTCA	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	GAATGGTCGCCATGATGGTGGTTATTATACCGTCA	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	419	NA
+35	phiX2	+	3076	433	432	467	35	GATGGTGGTTATTATACCGTCAAGGACTGTGTGAC	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	GATGGTGGTTATTATACCGTCAAGGACTGTGTGAC	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	431	NA
+35	phiX2	+	3076	440	439	474	35	GTTATTATACCGTCAAGGACTGTGTGACTATTGAC	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	GTTATTATACCGTCAAGGACTGTGTGACTATTGAC	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	439	NA
+35	phiX2	+	3076	453	452	487	35	CAAGGACTGTGTGACTATTGACGTCCTTCCCCGTA	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	CAAGGACTGTGTGACTATTGACGTCCTTCCCCGTA	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	451	NA
+35	phiX2	+	3076	502	501	536	35	GTTTATGTTGGTTTCATGGTTTGGTCTAACTTTAC	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	GTTTATGTTGGTTTCATGGTTTGGTCTAACTTTAC	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	500	NA
+35	phiX2	+	3076	533	532	567	35	TTACCGCTACTAAATGCCGCGGATTGGTTTCGCTG	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	TTACCGCTACTAAATGCCGCGGATTGGTTTCGCTG	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	532	NA
+35	phiX2	+	3076	547	546	581	35	TGCCGCGGATTGGTTTCGCTGAATCAGGTTATTAA	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	TGCCGCGGATTGGTTTCGCTGAATCAGGTTATTAA	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	546	NA
+35	phiX2	+	3076	597	596	631	35	CCAGCCACTTAAGTGAGGTGATTTATGTTTGGTGC	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	CCAGCCACTTAAGTGAGGTGATTTATGTTTGGTGC	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	595	NA
+35	phiX2	+	3076	654	653	688	35	GCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGG	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	GCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGG	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	653	NA
+35	phiX2	+	3076	735	734	769	35	GCTACCGATAACAATACTGTAGGCATGGGTGATGC	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	GCTACCGATAACAATACTGTAGGCATGGGTGATGC	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	733	NA
+35	phiX2	+	3076	756	755	790	35	GGCATGGGTGATGCTGGTATTAAATCTGCCATTCA	HWI-EAS91_1_306UPAAXX	+	36	1	0	35	1	0	35	35	GGCATGGGTGATGCTGGTATTAAATCTGCCATTCA	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	755	NA
+35	phiX2	+	3076	816	815	850	35	GAGGCCGCCCCTAGTTTTGTTTCTGGTGCTATGGC	HWI-EAS91_1_306UPAAXX	-	36	2	1	36	1	0	35	35	GAGGCCGCCCCTAGTTTTGTTTCTGGTGCTATGGC	...................................	35M	35/35	100.0%	35/36	97.2%	0/35	0.0%	814	NA
+36	phiX1	+	2310	1002	1001	1037	36	TGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1001	NA
+36	phiX1	+	2310	1002	1001	1037	36	TGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1001	NA
+36	phiX1	+	2310	1012	1011	1047	36	TCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1011	NA
+36	phiX1	+	2310	1014	1013	1049	36	AAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	AAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1013	NA
+36	phiX1	+	2310	1082	1081	1117	36	CTTATTACCATTTCAACTACTCCGGTTATCGCTGGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CTTATTACCATTTCAACTACTCCGGTTATCGCTGGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1081	NA
+36	phiX1	+	2310	1082	1081	1117	36	CTTATTACCATTTCAACTACTCCGGTTATCGCTGGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CTTATTACCATTTCAACTACTCCGGTTATCGCTGGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1081	NA
+36	phiX1	+	2310	1082	1081	1117	36	CTTATTACCATTTCAACTACTCCGGTTATCGCTGGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CTTATTACCATTTCAACTACTCCGGTTATCGCTGGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1081	NA
+36	phiX1	+	2310	1091	1090	1126	36	ATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	ATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1090	NA
+36	phiX1	+	2310	1115	1114	1150	36	GGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1114	NA
+36	phiX1	+	2310	1116	1115	1151	36	GCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1115	NA
+36	phiX1	+	2310	1144	1143	1179	36	CGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1143	NA
+36	phiX1	+	2310	1155	1154	1190	36	TTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1154	NA
+36	phiX1	+	2310	1193	1192	1228	36	GTAGACATTTTTACTTTTTATGTCCCTCATCGTCAC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GTAGACATTTTTACTTTTTATGTCCCTCATCGTCAC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1192	NA
+36	phiX1	+	2310	1193	1192	1228	36	GTAGACATTTTTACTTTTTATGTCCCTCATCGTCAC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GTAGACATTTTTACTTTTTATGTCCCTCATCGTCAC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1192	NA
+36	phiX1	+	2310	1207	1206	1242	36	TTTTTATGTCCCTCATCGTCACGTTTATGGTGAACA	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TTTTTATGTCCCTCATCGTCACGTTTATGGTGAACA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1206	NA
+36	phiX1	+	2310	1214	1213	1249	36	GTCCCTCATCGTCACGTTTATGGTGAACAGTGGATT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GTCCCTCATCGTCACGTTTATGGTGAACAGTGGATT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1213	NA
+36	phiX1	+	2310	1224	1223	1259	36	GTCACGTTTATGGTGAACAGTGGATTAAGTTCATGA	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GTCACGTTTATGGTGAACAGTGGATTAAGTTCATGA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1223	NA
+36	phiX1	+	2310	1229	1228	1264	36	GTTTATGGTGAACAGTGGATTAAGTTCATGAAGGAT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GTTTATGGTGAACAGTGGATTAAGTTCATGAAGGAT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1228	NA
+36	phiX1	+	2310	1242	1241	1277	36	AGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	AGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1241	NA
+36	phiX1	+	2310	1249	1248	1284	36	TAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1248	NA
+36	phiX1	+	2310	1252	1251	1287	36	GTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1251	NA
+36	phiX1	+	2310	1265	1264	1300	36	GGTGTTAATGCCACTCCTCTCCCGACTGTTAACACT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GGTGTTAATGCCACTCCTCTCCCGACTGTTAACACT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1264	NA
+36	phiX1	+	2310	1332	1331	1367	36	GCACGATTAACCCTGATACCAATAAAATCCCTAAGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GCACGATTAACCCTGATACCAATAAAATCCCTAAGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1331	NA
+36	phiX1	+	2310	1364	1363	1399	36	AAGCATTTGTTTCAGGGTTATTTGAATATCTATAAC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	AAGCATTTGTTTCAGGGTTATTTGAATATCTATAAC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1363	NA
+36	phiX1	+	2310	1461	1460	1496	36	AAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	AAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1460	NA
+36	phiX1	+	2310	1514	1513	1549	36	GCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAA	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1513	NA
+36	phiX1	+	2310	1522	1521	1557	36	TCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGAC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGAC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1521	NA
+36	phiX1	+	2310	1529	1528	1564	36	GAGACTGAGCTTTCTCGCCAAATGACGACTTCTACC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GAGACTGAGCTTTCTCGCCAAATGACGACTTCTACC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1528	NA
+36	phiX1	+	2310	1536	1535	1571	36	AGCTTTCTCGCCAAATGACGACTTCTACCACATCTA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	AGCTTTCTCGCCAAATGACGACTTCTACCACATCTA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1535	NA
+36	phiX1	+	2310	154	153	189	36	TTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	153	NA
+36	phiX1	+	2310	1545	1544	1580	36	GCCAAATGACGACTTCTACCACATCTATTGACATTA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GCCAAATGACGACTTCTACCACATCTATTGACATTA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1544	NA
+36	phiX1	+	2310	1554	1553	1589	36	CGACTTCTACCACATCTATTGACATTATGGGTCTGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CGACTTCTACCACATCTATTGACATTATGGGTCTGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1553	NA
+36	phiX1	+	2310	156	155	191	36	GCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	155	NA
+36	phiX1	+	2310	157	156	192	36	CGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	156	NA
+36	phiX1	+	2310	1575	1574	1610	36	ACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	ACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1574	NA
+36	phiX1	+	2310	1579	1578	1614	36	TATGGGTCTGCAAGCTGCTTATGCTAATTTGCATAC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TATGGGTCTGCAAGCTGCTTATGCTAATTTGCATAC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1578	NA
+36	phiX1	+	2310	1580	1579	1615	36	ATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACT	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	ATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1579	NA
+36	phiX1	+	2310	1582	1581	1617	36	GGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1581	NA
+36	phiX1	+	2310	1587	1586	1622	36	TGCAAGCTGCTTATGCTAATTTGCATACTGACCAAG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TGCAAGCTGCTTATGCTAATTTGCATACTGACCAAG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1586	NA
+36	phiX1	+	2310	1588	1587	1623	36	GCAAGCTGCTTATGCTAATTTGCATACTGACCAAGA	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCAAGCTGCTTATGCTAATTTGCATACTGACCAAGA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1587	NA
+36	phiX1	+	2310	1588	1587	1623	36	GCAAGCTGCTTATGCTAATTTGCATACTGACCAAGA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GCAAGCTGCTTATGCTAATTTGCATACTGACCAAGA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1587	NA
+36	phiX1	+	2310	1590	1589	1625	36	AAGCTGCTTATGCTAATTTGCATACTGACCAAGAAC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	AAGCTGCTTATGCTAATTTGCATACTGACCAAGAAC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1589	NA
+36	phiX1	+	2310	1590	1589	1625	36	AAGCTGCTTATGCTAATTTGCATACTGACCAAGAAC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	AAGCTGCTTATGCTAATTTGCATACTGACCAAGAAC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1589	NA
+36	phiX1	+	2310	161	160	196	36	GCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	160	NA
+36	phiX1	+	2310	1655	1654	1690	36	GTTATTTCTTCATTTGGAGGTAAAACCTCTTATGAC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GTTATTTCTTCATTTGGAGGTAAAACCTCTTATGAC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1654	NA
+36	phiX1	+	2310	1657	1656	1692	36	TATTTCTTCATTTGGAGGTAAAACCTCTTATGACGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TATTTCTTCATTTGGAGGTAAAACCTCTTATGACGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1656	NA
+36	phiX1	+	2310	1662	1661	1697	36	CTTCATTTGGAGGTAAAACCTCTTATGACGCTGACA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CTTCATTTGGAGGTAAAACCTCTTATGACGCTGACA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1661	NA
+36	phiX1	+	2310	1665	1664	1700	36	CATTTGGAGGTAAAACCTCTTATGACGCTGACAACC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CATTTGGAGGTAAAACCTCTTATGACGCTGACAACC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1664	NA
+36	phiX1	+	2310	1670	1669	1705	36	GGAGGTAAAACCTCTTATGACGCTGACAACCGTCCT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GGAGGTAAAACCTCTTATGACGCTGACAACCGTCCT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1669	NA
+36	phiX1	+	2310	1674	1673	1709	36	GTAAAACCTCTTATGACGCTGACAACCGTCCTTTAC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GTAAAACCTCTTATGACGCTGACAACCGTCCTTTAC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1673	NA
+36	phiX1	+	2310	1683	1682	1718	36	CTTATGACGCTGACAACCGTCCTTTACTTGTCATGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CTTATGACGCTGACAACCGTCCTTTACTTGTCATGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1682	NA
+36	phiX1	+	2310	1690	1689	1725	36	CGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1689	NA
+36	phiX1	+	2310	1701	1700	1736	36	GTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCAT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCAT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1700	NA
+36	phiX1	+	2310	1707	1706	1742	36	TACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1706	NA
+36	phiX1	+	2310	1719	1718	1754	36	GCTCTAATCTCTGGGCATCTGGCTATGATGTTGATG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCTCTAATCTCTGGGCATCTGGCTATGATGTTGATG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1718	NA
+36	phiX1	+	2310	1721	1720	1756	36	TCTAATCTCTGGGCATCTGGCTATGATGTTGATGGA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TCTAATCTCTGGGCATCTGGCTATGATGTTGATGGA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1720	NA
+36	phiX1	+	2310	1728	1727	1763	36	TCTGGGCATCTGGCTATGATGTTGATGGAACTGACC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TCTGGGCATCTGGCTATGATGTTGATGGAACTGACC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1727	NA
+36	phiX1	+	2310	1728	1727	1763	36	TCTGGGCATCTGGCTATGATGTTGATGGAACTGACC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TCTGGGCATCTGGCTATGATGTTGATGGAACTGACC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1727	NA
+36	phiX1	+	2310	1734	1733	1769	36	CATCTGGCTATGATGTTGATGGAACTGACCAAACGT	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CATCTGGCTATGATGTTGATGGAACTGACCAAACGT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1733	NA
+36	phiX1	+	2310	1764	1763	1799	36	AAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAAC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	AAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAAC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1763	NA
+36	phiX1	+	2310	177	176	212	36	CTTTGCGACCTTTCGCCATCAACTAACGATTCTGTC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CTTTGCGACCTTTCGCCATCAACTAACGATTCTGTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	176	NA
+36	phiX1	+	2310	1775	1774	1810	36	GGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAA	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1774	NA
+36	phiX1	+	2310	1788	1787	1823	36	GTCGTGTTCAACAGACCTATAAACATTCTGTGCCGC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GTCGTGTTCAACAGACCTATAAACATTCTGTGCCGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1787	NA
+36	phiX1	+	2310	1800	1799	1835	36	AGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	AGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1799	NA
+36	phiX1	+	2310	1828	1827	1863	36	CTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1827	NA
+36	phiX1	+	2310	1843	1842	1878	36	TGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1842	NA
+36	phiX1	+	2310	1852	1851	1887	36	GTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1851	NA
+36	phiX1	+	2310	1867	1866	1902	36	TGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1866	NA
+36	phiX1	+	2310	1888	1887	1923	36	GACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1887	NA
+36	phiX1	+	2310	1946	1945	1981	36	GGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1945	NA
+36	phiX1	+	2310	1948	1947	1983	36	CGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1947	NA
+36	phiX1	+	2310	1954	1953	1989	36	TGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1953	NA
+36	phiX1	+	2310	1957	1956	1992	36	TTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTAT	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTAT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1956	NA
+36	phiX1	+	2310	1974	1973	2009	36	CGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTT	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1973	NA
+36	phiX1	+	2310	2004	2003	2039	36	TCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2003	NA
+36	phiX1	+	2310	2059	2058	2094	36	TTATGCGCCTTCGTATGTTTCTCCTGCTTATCACCT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TTATGCGCCTTCGTATGTTTCTCCTGCTTATCACCT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2058	NA
+36	phiX1	+	2310	206	205	241	36	TTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	205	NA
+36	phiX1	+	2310	2071	2070	2106	36	GTATGTTTCTCCTGCTTATCACCTTCTTGAAGGCTT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GTATGTTTCTCCTGCTTATCACCTTCTTGAAGGCTT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2070	NA
+36	phiX1	+	2310	2071	2070	2106	36	GTATGTTTCTCCTGCTTATCACCTTCTTGAAGGCTT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GTATGTTTCTCCTGCTTATCACCTTCTTGAAGGCTT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2070	NA
+36	phiX1	+	2310	2099	2098	2134	36	GAAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GAAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2098	NA
+36	phiX1	+	2310	2100	2099	2135	36	AAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	AAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2099	NA
+36	phiX1	+	2310	2116	2115	2151	36	TCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2115	NA
+36	phiX1	+	2310	2128	2127	2163	36	TTCTGGTGATTTGCAAGAACGCGTACTTATTCGCCA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TTCTGGTGATTTGCAAGAACGCGTACTTATTCGCCA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2127	NA
+36	phiX1	+	2310	2154	2153	2189	36	TTATTCGCCACCATGATTATGACCAGTGTTTCCAGT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TTATTCGCCACCATGATTATGACCAGTGTTTCCAGT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2153	NA
+36	phiX1	+	2310	2160	2159	2195	36	GCCACCATGATTATGACCAGTGTTTCCAGTCCGTTC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCCACCATGATTATGACCAGTGTTTCCAGTCCGTTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2159	NA
+36	phiX1	+	2310	2175	2174	2210	36	ACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	ACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2174	NA
+36	phiX1	+	2310	22	21	57	36	GCAGAAGTTAACACTTTCGGATATTTCTGATGAGTC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCAGAAGTTAACACTTTCGGATATTTCTGATGAGTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	21	NA
+36	phiX1	+	2310	220	219	255	36	GACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	219	NA
+36	phiX1	+	2310	2217	2216	2252	36	AGGTTAAATTTAATGTGACCGTTTATCGCAATCTGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	AGGTTAAATTTAATGTGACCGTTTATCGCAATCTGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2216	NA
+36	phiX1	+	2310	2225	2224	2260	36	TTTAATGTGACCGTTTATCGCAATCTGCCGACCACT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TTTAATGTGACCGTTTATCGCAATCTGCCGACCACT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2224	NA
+36	phiX1	+	2310	2239	2238	2274	36	TTATCGCAATCTGCCGACCACTCGCGATTCAATCAT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TTATCGCAATCTGCCGACCACTCGCGATTCAATCAT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2238	NA
+36	phiX1	+	2310	227	226	262	36	TGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	226	NA
+36	phiX1	+	2310	229	228	264	36	GATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	228	NA
+36	phiX1	+	2310	231	230	266	36	TGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	230	NA
+36	phiX1	+	2310	242	241	277	36	GGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	241	NA
+36	phiX1	+	2310	257	256	292	36	GCACGTTCGTCAAGGACTGGTTTAGATATGAGTCAC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GCACGTTCGTCAAGGACTGGTTTAGATATGAGTCAC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	256	NA
+36	phiX1	+	2310	286	285	321	36	GAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTT	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	285	NA
+36	phiX1	+	2310	289	288	324	36	TCACATTTTGTTCATGGTAGAGATTCTCTTGTTGAC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TCACATTTTGTTCATGGTAGAGATTCTCTTGTTGAC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	288	NA
+36	phiX1	+	2310	305	304	340	36	GTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	304	NA
+36	phiX1	+	2310	318	317	353	36	TGTTGACATTTTAAAAGAGCGTGGATTACTATCTGA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TGTTGACATTTTAAAAGAGCGTGGATTACTATCTGA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	317	NA
+36	phiX1	+	2310	332	331	367	36	AAGAGCGTGGATTACTATCTGAGTCCGATGCTGTTC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	AAGAGCGTGGATTACTATCTGAGTCCGATGCTGTTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	331	NA
+36	phiX1	+	2310	333	332	368	36	AGAGCGTGGATTACTATCTGAGTCCGATGCTGTTCA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	AGAGCGTGGATTACTATCTGAGTCCGATGCTGTTCA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	332	NA
+36	phiX1	+	2310	338	337	373	36	GTGGATTACTATCTGAGTCCGATGCTGTTCAACCAC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GTGGATTACTATCTGAGTCCGATGCTGTTCAACCAC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	337	NA
+36	phiX1	+	2310	339	338	374	36	TGGATTACTATCTGAGTCCGATGCTGTTCAACCACT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TGGATTACTATCTGAGTCCGATGCTGTTCAACCACT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	338	NA
+36	phiX1	+	2310	348	347	383	36	ATCTGAGTCCGATGCTGTTCAACCACTAATAGGTAA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	ATCTGAGTCCGATGCTGTTCAACCACTAATAGGTAA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	347	NA
+36	phiX1	+	2310	349	348	384	36	TCTGAGTCCGATGCTGTTCAACCACTAATAGGTAAG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TCTGAGTCCGATGCTGTTCAACCACTAATAGGTAAG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	348	NA
+36	phiX1	+	2310	379	378	414	36	GGTAAGAAATCATGAGTCAAGTTACTGAACAATCCG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GGTAAGAAATCATGAGTCAAGTTACTGAACAATCCG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	378	NA
+36	phiX1	+	2310	388	387	423	36	TCATGAGTCAAGTTACTGAACAATCCGTACGTTTCC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TCATGAGTCAAGTTACTGAACAATCCGTACGTTTCC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	387	NA
+36	phiX1	+	2310	409	408	444	36	AATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTA	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	AATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	408	NA
+36	phiX1	+	2310	441	440	476	36	ATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTA	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	ATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	440	NA
+36	phiX1	+	2310	441	440	476	36	ATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	ATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	440	NA
+36	phiX1	+	2310	485	484	520	36	TGATTTCGATTTTCTGACGAGTAACAAAGTTTGGAT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TGATTTCGATTTTCTGACGAGTAACAAAGTTTGGAT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	484	NA
+36	phiX1	+	2310	496	495	531	36	TTCTGACGAGTAACAAAGTTTGGATTGCTACTGACC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TTCTGACGAGTAACAAAGTTTGGATTGCTACTGACC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	495	NA
+36	phiX1	+	2310	513	512	548	36	GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	512	NA
+36	phiX1	+	2310	521	520	556	36	TGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	520	NA
+36	phiX1	+	2310	524	523	559	36	TACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	523	NA
+36	phiX1	+	2310	533	532	568	36	CTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	532	NA
+36	phiX1	+	2310	54	53	89	36	AGTCGAAAAATTATCTTGATAAAGCAGGAATTACTA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	AGTCGAAAAATTATCTTGATAAAGCAGGAATTACTA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	53	NA
+36	phiX1	+	2310	555	554	590	36	GAGGCTTGCGTTTATGGTACGCTGGACTTTGTGGGA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GAGGCTTGCGTTTATGGTACGCTGGACTTTGTGGGA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	554	NA
+36	phiX1	+	2310	557	556	592	36	GGCTTGCGTTTATGGTACGCTGGACTTTGTGGGATA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GGCTTGCGTTTATGGTACGCTGGACTTTGTGGGATA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	556	NA
+36	phiX1	+	2310	574	573	609	36	CGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	573	NA
+36	phiX1	+	2310	584	583	619	36	TGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	583	NA
+36	phiX1	+	2310	611	610	646	36	TGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGT	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	610	NA
+36	phiX1	+	2310	613	612	648	36	TTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	612	NA
+36	phiX1	+	2310	615	614	650	36	GAGTTTATTGCTGCCGTCATTGCTTATTATGTTCAT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GAGTTTATTGCTGCCGTCATTGCTTATTATGTTCAT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	614	NA
+36	phiX1	+	2310	632	631	667	36	CATTGCTTATTATGTTCATCCCGTCAACATTCAAAC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CATTGCTTATTATGTTCATCCCGTCAACATTCAAAC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	631	NA
+36	phiX1	+	2310	635	634	670	36	TGCTTATTATGTTCATCCCGTCAACATTCAAACGGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TGCTTATTATGTTCATCCCGTCAACATTCAAACGGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	634	NA
+36	phiX1	+	2310	636	635	671	36	GCTTATTATGTTCATCCCGTCAACATTCAAACGGCC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GCTTATTATGTTCATCCCGTCAACATTCAAACGGCC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	635	NA
+36	phiX1	+	2310	640	639	675	36	ATTATGTTCATCCCGTCAACATTCAAACGGCCTGTC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	ATTATGTTCATCCCGTCAACATTCAAACGGCCTGTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	639	NA
+36	phiX1	+	2310	660	659	695	36	ATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	ATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	659	NA
+36	phiX1	+	2310	72	71	107	36	ATAAAGCAGGAATTACTACTGCTTGTTTACGAATTA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	ATAAAGCAGGAATTACTACTGCTTGTTTACGAATTA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	71	NA
+36	phiX1	+	2310	727	726	762	36	GTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	726	NA
+36	phiX1	+	2310	772	771	807	36	GCGCAGGAAACACTGACGTTCTTACTGACGCAGAAG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCGCAGGAAACACTGACGTTCTTACTGACGCAGAAG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	771	NA
+36	phiX1	+	2310	852	851	887	36	CTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	851	NA
+36	phiX1	+	2310	900	899	935	36	TGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	899	NA
+36	phiX1	+	2310	910	909	945	36	TAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	909	NA
+36	phiX1	+	2310	945	944	980	36	TAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	944	NA
+36	phiX1	+	2310	962	961	997	36	TAATTGCAGGGGCTTCGGCCCCTTACTTGAGGATAA	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TAATTGCAGGGGCTTCGGCCCCTTACTTGAGGATAA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	961	NA
+36	phiX1	+	2310	989	988	1024	36	TGAGGATAAATTATGTCTAATATTCAAACTGGCGCC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TGAGGATAAATTATGTCTAATATTCAAACTGGCGCC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	988	NA
+36	phiX2	+	3076	1001	1000	1036	36	GCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1000	NA
+36	phiX2	+	3076	1003	1002	1038	36	TTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1002	NA
+36	phiX2	+	3076	1016	1015	1051	36	GCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1015	NA
+36	phiX2	+	3076	1034	1033	1069	36	TTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1033	NA
+36	phiX2	+	3076	1058	1057	1093	36	CGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1057	NA
+36	phiX2	+	3076	1085	1084	1120	36	TAAAATGCAACTGGACAATCAGAAAGAGATTGCCGA	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TAAAATGCAACTGGACAATCAGAAAGAGATTGCCGA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1084	NA
+36	phiX2	+	3076	1098	1097	1133	36	GACAATCAGAAAGAGATTGCCGAGATGCAAAATGAG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GACAATCAGAAAGAGATTGCCGAGATGCAAAATGAG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1097	NA
+36	phiX2	+	3076	1110	1109	1145	36	GAGATTGCCGAGATGCAAAATGAGACTCAAAAAGAG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GAGATTGCCGAGATGCAAAATGAGACTCAAAAAGAG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1109	NA
+36	phiX2	+	3076	1149	1148	1184	36	GCTGGCATTCAGTCGGCGACTTCACGCCAGAATACG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCTGGCATTCAGTCGGCGACTTCACGCCAGAATACG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1148	NA
+36	phiX2	+	3076	1154	1153	1189	36	CATTCAGTCGGCGACTTCACGCCAGAATACGAAAGA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CATTCAGTCGGCGACTTCACGCCAGAATACGAAAGA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1153	NA
+36	phiX2	+	3076	1162	1161	1197	36	CGGCGACTTCACGCCAGAATACGAAAGACCAGGTAT	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CGGCGACTTCACGCCAGAATACGAAAGACCAGGTAT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1161	NA
+36	phiX2	+	3076	1194	1193	1229	36	GTATATGCACAAAATGAGATGCTTGCTTATCAACAG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GTATATGCACAAAATGAGATGCTTGCTTATCAACAG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1193	NA
+36	phiX2	+	3076	1210	1209	1245	36	AGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	AGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1209	NA
+36	phiX2	+	3076	1212	1211	1247	36	ATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	ATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1211	NA
+36	phiX2	+	3076	1230	1229	1265	36	AAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	AAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1229	NA
+36	phiX2	+	3076	1234	1233	1269	36	AGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	AGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1233	NA
+36	phiX2	+	3076	1253	1252	1288	36	GTCTATTATGGAAAACACCAATCTTTCCAAGCAACA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GTCTATTATGGAAAACACCAATCTTTCCAAGCAACA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1252	NA
+36	phiX2	+	3076	126	125	161	36	TTCTGATAAGCTGGTTCTCACTTCTGTTACTCCAGC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TTCTGATAAGCTGGTTCTCACTTCTGTTACTCCAGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	125	NA
+36	phiX2	+	3076	126	125	161	36	TTCTGATAAGCTGGTTCTCACTTCTGTTACTCCAGC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TTCTGATAAGCTGGTTCTCACTTCTGTTACTCCAGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	125	NA
+36	phiX2	+	3076	1260	1259	1295	36	ATGGAAAACACCAATCTTTCCAAGCAACAGCAGGTT	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	ATGGAAAACACCAATCTTTCCAAGCAACAGCAGGTT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1259	NA
+36	phiX2	+	3076	1262	1261	1297	36	GGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1261	NA
+36	phiX2	+	3076	1263	1262	1298	36	GAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1262	NA
+36	phiX2	+	3076	1277	1276	1312	36	TTCCAAGCAACAGCAGGTTTCCGAGATTATGCGCCA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TTCCAAGCAACAGCAGGTTTCCGAGATTATGCGCCA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1276	NA
+36	phiX2	+	3076	1282	1281	1317	36	AGCAACAGCAGGTTTCCGAGATTATGCGCCAAATGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	AGCAACAGCAGGTTTCCGAGATTATGCGCCAAATGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1281	NA
+36	phiX2	+	3076	1290	1289	1325	36	CAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1289	NA
+36	phiX2	+	3076	1307	1306	1342	36	GCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1306	NA
+36	phiX2	+	3076	1309	1308	1344	36	GCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1308	NA
+36	phiX2	+	3076	1316	1315	1351	36	GCTTACTCAAGCTCAAACGGCTGGTCAGTATTTTAC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GCTTACTCAAGCTCAAACGGCTGGTCAGTATTTTAC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1315	NA
+36	phiX2	+	3076	1319	1318	1354	36	TACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1318	NA
+36	phiX2	+	3076	132	131	167	36	TAAGCTGGTTCTCACTTCTGTTACTCCAGCTTCTTC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TAAGCTGGTTCTCACTTCTGTTACTCCAGCTTCTTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	131	NA
+36	phiX2	+	3076	1364	1363	1399	36	CAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1363	NA
+36	phiX2	+	3076	1389	1388	1424	36	GCTGAGGTTGACTTAGTTCATCAGCAAACGCAGAAT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCTGAGGTTGACTTAGTTCATCAGCAAACGCAGAAT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1388	NA
+36	phiX2	+	3076	1398	1397	1433	36	GACTTAGTTCATCAGCAAACGCAGAATCAGCGGTAT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GACTTAGTTCATCAGCAAACGCAGAATCAGCGGTAT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1397	NA
+36	phiX2	+	3076	1402	1401	1437	36	TAGTTCATCAGCAAACGCAGAATCAGCGGTATGGCT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TAGTTCATCAGCAAACGCAGAATCAGCGGTATGGCT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1401	NA
+36	phiX2	+	3076	1421	1420	1456	36	GAATCAGCGGTATGGCTCTTCTCATATTGGCGCTAC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GAATCAGCGGTATGGCTCTTCTCATATTGGCGCTAC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1420	NA
+36	phiX2	+	3076	143	142	178	36	TCACTTCTGTTACTCCAGCTTCTTCGGCACCTGTTT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TCACTTCTGTTACTCCAGCTTCTTCGGCACCTGTTT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	142	NA
+36	phiX2	+	3076	1446	1445	1481	36	ATTGGCGCTACTGCAAAGGATATTTCTAATGTCGTC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	ATTGGCGCTACTGCAAAGGATATTTCTAATGTCGTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1445	NA
+36	phiX2	+	3076	1451	1450	1486	36	CGCTACTGCAAAGGATATTTCTAATGTCGTCACTGA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CGCTACTGCAAAGGATATTTCTAATGTCGTCACTGA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1450	NA
+36	phiX2	+	3076	1477	1476	1512	36	TCGTCACTGATGCTGCTTCTGGTGTGGTTGATATTT	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TCGTCACTGATGCTGCTTCTGGTGTGGTTGATATTT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1476	NA
+36	phiX2	+	3076	1539	1538	1574	36	GATACTTGGAACAATTTCTGGAAAGACGGTAAAGCT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GATACTTGGAACAATTTCTGGAAAGACGGTAAAGCT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1538	NA
+36	phiX2	+	3076	1548	1547	1583	36	AACAATTTCTGGAAAGACGGTAAAGCTGATGGTATT	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	AACAATTTCTGGAAAGACGGTAAAGCTGATGGTATT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1547	NA
+36	phiX2	+	3076	1551	1550	1586	36	AATTTCTGGAAAGACGGTAAAGCTGATGGTATTGGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	AATTTCTGGAAAGACGGTAAAGCTGATGGTATTGGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1550	NA
+36	phiX2	+	3076	1552	1551	1587	36	ATTTCTGGAAAGACGGTAAAGCTGATGGTATTGGCT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	ATTTCTGGAAAGACGGTAAAGCTGATGGTATTGGCT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1551	NA
+36	phiX2	+	3076	1553	1552	1588	36	TTTCTGGAAAGACGGTAAAGCTGATGGTATTGGCTC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TTTCTGGAAAGACGGTAAAGCTGATGGTATTGGCTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1552	NA
+36	phiX2	+	3076	1610	1609	1645	36	GTCAGGATTGACACCCTCCCAATTGTATGTTTTCAT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GTCAGGATTGACACCCTCCCAATTGTATGTTTTCAT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1609	NA
+36	phiX2	+	3076	1668	1667	1703	36	TTTATGGTTCGTTCTTATTACCCTTCTGAATGTCAC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TTTATGGTTCGTTCTTATTACCCTTCTGAATGTCAC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1667	NA
+36	phiX2	+	3076	1669	1668	1704	36	TTATGGTTCGTTCTTATTACCCTTCTGAATGTCACG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TTATGGTTCGTTCTTATTACCCTTCTGAATGTCACG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1668	NA
+36	phiX2	+	3076	1672	1671	1707	36	TGGTTCGTTCTTATTACCCTTCTGAATGTCACGCTG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TGGTTCGTTCTTATTACCCTTCTGAATGTCACGCTG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1671	NA
+36	phiX2	+	3076	1678	1677	1713	36	GTTCTTATTACCCTTCTGAATGTCACGCTGATTATT	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GTTCTTATTACCCTTCTGAATGTCACGCTGATTATT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1677	NA
+36	phiX2	+	3076	169	168	204	36	GCACCTGTTTTACAGACACCTAAAGCTACATCGTCA	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCACCTGTTTTACAGACACCTAAAGCTACATCGTCA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	168	NA
+36	phiX2	+	3076	169	168	204	36	GCACCTGTTTTACAGACACCTAAAGCTACATCGTCA	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCACCTGTTTTACAGACACCTAAAGCTACATCGTCA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	168	NA
+36	phiX2	+	3076	1690	1689	1725	36	CTTCTGAATGTCACGCTGATTATTTTGACTTTGAGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CTTCTGAATGTCACGCTGATTATTTTGACTTTGAGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1689	NA
+36	phiX2	+	3076	1695	1694	1730	36	GAATGTCACGCTGATTATTTTGACTTTGAGCGTATC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GAATGTCACGCTGATTATTTTGACTTTGAGCGTATC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1694	NA
+36	phiX2	+	3076	1716	1715	1751	36	GACTTTGAGCGTATCGAGGCTCTTAAACCTGCTATT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GACTTTGAGCGTATCGAGGCTCTTAAACCTGCTATT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1715	NA
+36	phiX2	+	3076	1729	1728	1764	36	TCGAGGCTCTTAAACCTGCTATTGAGGCTTGTGGCA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TCGAGGCTCTTAAACCTGCTATTGAGGCTTGTGGCA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1728	NA
+36	phiX2	+	3076	1733	1732	1768	36	GGCTCTTAAACCTGCTATTGAGGCTTGTGGCATTTC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GGCTCTTAAACCTGCTATTGAGGCTTGTGGCATTTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1732	NA
+36	phiX2	+	3076	1753	1752	1788	36	AGGCTTGTGGCATTTCTACTCTTTCTCAATCCCCAA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	AGGCTTGTGGCATTTCTACTCTTTCTCAATCCCCAA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1752	NA
+36	phiX2	+	3076	1785	1784	1820	36	CCAATGCTTGGCTTCCATAAGCAGATGGATAACCGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CCAATGCTTGGCTTCCATAAGCAGATGGATAACCGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1784	NA
+36	phiX2	+	3076	1788	1787	1823	36	ATGCTTGGCTTCCATAAGCAGATGGATAACCGCATC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	ATGCTTGGCTTCCATAAGCAGATGGATAACCGCATC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1787	NA
+36	phiX2	+	3076	1789	1788	1824	36	TGCTTGGCTTCCATAAGCAGATGGATAACCGCATCA	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TGCTTGGCTTCCATAAGCAGATGGATAACCGCATCA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1788	NA
+36	phiX2	+	3076	1816	1815	1851	36	ACCGCATCAAGCTCTTGGAAGAGATTCTGTCTTTTC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	ACCGCATCAAGCTCTTGGAAGAGATTCTGTCTTTTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1815	NA
+36	phiX2	+	3076	1820	1819	1855	36	CATCAAGCTCTTGGAAGAGATTCTGTCTTTTCGTAT	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CATCAAGCTCTTGGAAGAGATTCTGTCTTTTCGTAT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1819	NA
+36	phiX2	+	3076	1822	1821	1857	36	TCAAGCTCTTGGAAGAGATTCTGTCTTTTCGTATGC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TCAAGCTCTTGGAAGAGATTCTGTCTTTTCGTATGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1821	NA
+36	phiX2	+	3076	1860	1859	1895	36	GGCGTTGAGTTCGATAATGGTGATATGTATGTTGAC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GGCGTTGAGTTCGATAATGGTGATATGTATGTTGAC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1859	NA
+36	phiX2	+	3076	1864	1863	1899	36	TTGAGTTCGATAATGGTGATATGTATGTTGACGGCC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TTGAGTTCGATAATGGTGATATGTATGTTGACGGCC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1863	NA
+36	phiX2	+	3076	1866	1865	1901	36	GAGTTCGATAATGGTGATATGTATGTTGACGGCCAT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GAGTTCGATAATGGTGATATGTATGTTGACGGCCAT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1865	NA
+36	phiX2	+	3076	1882	1881	1917	36	ATATGTATGTTGACGGCCATAAGGCTGCTTCTGACG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	ATATGTATGTTGACGGCCATAAGGCTGCTTCTGACG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1881	NA
+36	phiX2	+	3076	1886	1885	1921	36	GTATGTTGACGGCCATAAGGCTGCTTCTGACGTTCG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GTATGTTGACGGCCATAAGGCTGCTTCTGACGTTCG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1885	NA
+36	phiX2	+	3076	1893	1892	1928	36	GACGGCCATAAGGCTGCTTCTGACGTTCGTGATGAG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GACGGCCATAAGGCTGCTTCTGACGTTCGTGATGAG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1892	NA
+36	phiX2	+	3076	1907	1906	1942	36	TGCTTCTGACGTTCGTGATGAGTTTGTATCTGTTAC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TGCTTCTGACGTTCGTGATGAGTTTGTATCTGTTAC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1906	NA
+36	phiX2	+	3076	1938	1937	1973	36	GTTACTGAGAAGTTAATGGATGAATTGGCACAATGC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GTTACTGAGAAGTTAATGGATGAATTGGCACAATGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1937	NA
+36	phiX2	+	3076	1939	1938	1974	36	TTACTGAGAAGTTAATGGATGAATTGGCACAATGCT	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TTACTGAGAAGTTAATGGATGAATTGGCACAATGCT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1938	NA
+36	phiX2	+	3076	1944	1943	1979	36	GAGAAGTTAATGGATGAATTGGCACAATGCTACAAT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GAGAAGTTAATGGATGAATTGGCACAATGCTACAAT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1943	NA
+36	phiX2	+	3076	1944	1943	1979	36	GAGAAGTTAATGGATGAATTGGCACAATGCTACAAT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GAGAAGTTAATGGATGAATTGGCACAATGCTACAAT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1943	NA
+36	phiX2	+	3076	1946	1945	1981	36	GAAGTTAATGGATGAATTGGCACAATGCTACAATGT	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GAAGTTAATGGATGAATTGGCACAATGCTACAATGT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1945	NA
+36	phiX2	+	3076	1950	1949	1985	36	TTAATGGATGAATTGGCACAATGCTACAATGTGCTC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TTAATGGATGAATTGGCACAATGCTACAATGTGCTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1949	NA
+36	phiX2	+	3076	1972	1971	2007	36	GCTACAATGTGCTCCCCCAACTTGATATTAATAACA	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCTACAATGTGCTCCCCCAACTTGATATTAATAACA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1971	NA
+36	phiX2	+	3076	1972	1971	2007	36	GCTACAATGTGCTCCCCCAACTTGATATTAATAACA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GCTACAATGTGCTCCCCCAACTTGATATTAATAACA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	1971	NA
+36	phiX2	+	3076	2071	2070	2106	36	AGTTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	AGTTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2070	NA
+36	phiX2	+	3076	2094	2093	2129	36	GAACGCCCTCTTAAGGATATTCGCGATGAGTATAAT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GAACGCCCTCTTAAGGATATTCGCGATGAGTATAAT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2093	NA
+36	phiX2	+	3076	2104	2103	2139	36	TTAAGGATATTCGCGATGAGTATAATTACCCCAAAA	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TTAAGGATATTCGCGATGAGTATAATTACCCCAAAA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2103	NA
+36	phiX2	+	3076	2118	2117	2153	36	GATGAGTATAATTACCCCAAAAAGAAAGGTATTAAG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GATGAGTATAATTACCCCAAAAAGAAAGGTATTAAG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2117	NA
+36	phiX2	+	3076	2124	2123	2159	36	TATAATTACCCCAAAAAGAAAGGTATTAAGGATGAG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TATAATTACCCCAAAAAGAAAGGTATTAAGGATGAG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2123	NA
+36	phiX2	+	3076	2130	2129	2165	36	TACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCA	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2129	NA
+36	phiX2	+	3076	2161	2160	2196	36	GTTCAAGATTGCTGGAGGCCTCCACTATGAAATCGC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GTTCAAGATTGCTGGAGGCCTCCACTATGAAATCGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2160	NA
+36	phiX2	+	3076	2229	2228	2264	36	GCAATGCGACAGGCTCATGCTGATGGTTGGTTTATC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCAATGCGACAGGCTCATGCTGATGGTTGGTTTATC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2228	NA
+36	phiX2	+	3076	2241	2240	2276	36	GCTCATGCTGATGGTTGGTTTATCGTTTTTGACACT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCTCATGCTGATGGTTGGTTTATCGTTTTTGACACT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2240	NA
+36	phiX2	+	3076	2250	2249	2285	36	GATGGTTGGTTTATCGTTTTTGACACTCTCACGTTG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GATGGTTGGTTTATCGTTTTTGACACTCTCACGTTG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2249	NA
+36	phiX2	+	3076	2268	2267	2303	36	TTTGACACTCTCACGTTGGCTGACGACCGATTAGAG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TTTGACACTCTCACGTTGGCTGACGACCGATTAGAG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2267	NA
+36	phiX2	+	3076	2286	2285	2321	36	GCTGACGACCGATTAGAGGCGTTTTATGATAATCCC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GCTGACGACCGATTAGAGGCGTTTTATGATAATCCC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2285	NA
+36	phiX2	+	3076	2296	2295	2331	36	GATTAGAGGCGTTTTATGATAATCCCAATGCTTTGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GATTAGAGGCGTTTTATGATAATCCCAATGCTTTGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2295	NA
+36	phiX2	+	3076	2298	2297	2333	36	TTAGAGGCGTTTTATGATAATCCCAATGCTTTGCGT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TTAGAGGCGTTTTATGATAATCCCAATGCTTTGCGT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2297	NA
+36	phiX2	+	3076	2374	2373	2409	36	AGGGTCGCAAGGCTAATGATTCACACGCCGACTGCT	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	AGGGTCGCAAGGCTAATGATTCACACGCCGACTGCT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2373	NA
+36	phiX2	+	3076	2380	2379	2415	36	GCAAGGCTAATGATTCACACGCCGACTGCTATCAGT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCAAGGCTAATGATTCACACGCCGACTGCTATCAGT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2379	NA
+36	phiX2	+	3076	2430	2429	2465	36	GAGTATGGTACAGCTAATGGCCGTCTTCATTTCCAT	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GAGTATGGTACAGCTAATGGCCGTCTTCATTTCCAT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2429	NA
+36	phiX2	+	3076	247	246	282	36	GGTTTTCTTCATTGCATTCAGATGGATACATCTGTC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GGTTTTCTTCATTGCATTCAGATGGATACATCTGTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	246	NA
+36	phiX2	+	3076	247	246	282	36	GGTTTTCTTCATTGCATTCAGATGGATACATCTGTC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GGTTTTCTTCATTGCATTCAGATGGATACATCTGTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	246	NA
+36	phiX2	+	3076	2478	2477	2513	36	ATGCGGACACTTCCTACAGGTAGCGTTGACCCTAAT	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	ATGCGGACACTTCCTACAGGTAGCGTTGACCCTAAT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2477	NA
+36	phiX2	+	3076	2482	2481	2517	36	GGACACTTCCTACAGGTAGCGTTGACCCTAATTTTG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GGACACTTCCTACAGGTAGCGTTGACCCTAATTTTG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2481	NA
+36	phiX2	+	3076	2530	2529	2565	36	GCAATCGCCGCCAGTTAAATAGCTTGCAAAATACGT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCAATCGCCGCCAGTTAAATAGCTTGCAAAATACGT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2529	NA
+36	phiX2	+	3076	2555	2554	2590	36	GCAAAATACGTGGCCTTATGGTTACAGTATGCCCAT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCAAAATACGTGGCCTTATGGTTACAGTATGCCCAT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2554	NA
+36	phiX2	+	3076	2556	2555	2591	36	CAAAATACGTGGCCTTATGGTTACAGTATGCCCATC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CAAAATACGTGGCCTTATGGTTACAGTATGCCCATC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2555	NA
+36	phiX2	+	3076	2574	2573	2609	36	GGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2573	NA
+36	phiX2	+	3076	2581	2580	2616	36	GTATGCCCATCGCAGTTCGCTACACGCAGGACGCTT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GTATGCCCATCGCAGTTCGCTACACGCAGGACGCTT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2580	NA
+36	phiX2	+	3076	2599	2598	2634	36	GCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2598	NA
+36	phiX2	+	3076	2626	2625	2661	36	CTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2625	NA
+36	phiX2	+	3076	2626	2625	2661	36	CTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2625	NA
+36	phiX2	+	3076	2627	2626	2662	36	TGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2626	NA
+36	phiX2	+	3076	2635	2634	2670	36	TGTGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAAG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TGTGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAAG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2634	NA
+36	phiX2	+	3076	264	263	299	36	TCAGATGGATACATCTGTCAACGCCGCTAATCAGGT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TCAGATGGATACATCTGTCAACGCCGCTAATCAGGT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	263	NA
+36	phiX2	+	3076	2640	2639	2675	36	CCTGTTGATGCTAAAGGTGAGCCGCTTAAAGCTACC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CCTGTTGATGCTAAAGGTGAGCCGCTTAAAGCTACC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2639	NA
+36	phiX2	+	3076	2645	2644	2680	36	TGATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTTA	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TGATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTTA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2644	NA
+36	phiX2	+	3076	2647	2646	2682	36	ATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTTATA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	ATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTTATA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2646	NA
+36	phiX2	+	3076	267	266	302	36	GATGGATACATCTGTCAACGCCGCTAATCAGGTTGT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GATGGATACATCTGTCAACGCCGCTAATCAGGTTGT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	266	NA
+36	phiX2	+	3076	2671	2670	2706	36	CTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2670	NA
+36	phiX2	+	3076	2695	2694	2730	36	TCTATGTGGCTAAATACGTTAACAAAAAGTCAGATA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TCTATGTGGCTAAATACGTTAACAAAAAGTCAGATA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2694	NA
+36	phiX2	+	3076	2723	2722	2758	36	GTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2722	NA
+36	phiX2	+	3076	2729	2728	2764	36	TATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2728	NA
+36	phiX2	+	3076	2742	2741	2777	36	GCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCA	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2741	NA
+36	phiX2	+	3076	2763	2762	2798	36	GAATGGAACAACTCACTAAAAACCAAGCTGTCGCTA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GAATGGAACAACTCACTAAAAACCAAGCTGTCGCTA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2762	NA
+36	phiX2	+	3076	2767	2766	2802	36	GGAACAACTCACTAAAAACCAAGCTGTCGCTACTTC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GGAACAACTCACTAAAAACCAAGCTGTCGCTACTTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2766	NA
+36	phiX2	+	3076	2789	2788	2824	36	GCTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2788	NA
+36	phiX2	+	3076	2795	2794	2830	36	GCTACTTCCCAAGAAGCTGTTCAGAATCAGAATGAG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCTACTTCCCAAGAAGCTGTTCAGAATCAGAATGAG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2794	NA
+36	phiX2	+	3076	2797	2796	2832	36	TACTTCCCAAGAAGCTGTTCAGAATCAGAATGAGCC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TACTTCCCAAGAAGCTGTTCAGAATCAGAATGAGCC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2796	NA
+36	phiX2	+	3076	282	281	317	36	CAACGCCGCTAATCAGGTTGTTTCTGTTGGTGCTGA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CAACGCCGCTAATCAGGTTGTTTCTGTTGGTGCTGA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	281	NA
+36	phiX2	+	3076	2841	2840	2876	36	GGGATGAAAATGCTCACAATGACAAATCTGTCCACG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GGGATGAAAATGCTCACAATGACAAATCTGTCCACG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2840	NA
+36	phiX2	+	3076	2842	2841	2877	36	GGATGAAAATGCTCACAATGACAAATCTGTCCACGG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GGATGAAAATGCTCACAATGACAAATCTGTCCACGG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2841	NA
+36	phiX2	+	3076	2847	2846	2882	36	AAAATGCTCACAATGACAAATCTGTCCACGGAGTGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	AAAATGCTCACAATGACAAATCTGTCCACGGAGTGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2846	NA
+36	phiX2	+	3076	2852	2851	2887	36	GCTCACAATGACAAATCTGTCCACGGAGTGCTTAAT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCTCACAATGACAAATCTGTCCACGGAGTGCTTAAT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2851	NA
+36	phiX2	+	3076	2866	2865	2901	36	ATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	ATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2865	NA
+36	phiX2	+	3076	2869	2868	2904	36	TGTCCACGGAGTGCTTAATCCAACTTACCAAGCTGG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TGTCCACGGAGTGCTTAATCCAACTTACCAAGCTGG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2868	NA
+36	phiX2	+	3076	2877	2876	2912	36	GAGTGCTTAATCCAACTTACCAAGCTGGGTTACGAC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GAGTGCTTAATCCAACTTACCAAGCTGGGTTACGAC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2876	NA
+36	phiX2	+	3076	2896	2895	2931	36	CCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2895	NA
+36	phiX2	+	3076	2962	2961	2997	36	GATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	2961	NA
+36	phiX2	+	3076	311	310	346	36	GTGCTGATATTGCTTTTGATGCCGACCCTAAATTTT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GTGCTGATATTGCTTTTGATGCCGACCCTAAATTTT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	310	NA
+36	phiX2	+	3076	358	357	393	36	GTTCGCTTTGAGTCTTCTTCGGTTCCGACTACCCTC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GTTCGCTTTGAGTCTTCTTCGGTTCCGACTACCCTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	357	NA
+36	phiX2	+	3076	379	378	414	36	GTTCCGACTACCCTCCCGACTGCCTATGATGTTTAT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GTTCCGACTACCCTCCCGACTGCCTATGATGTTTAT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	378	NA
+36	phiX2	+	3076	379	378	414	36	GTTCCGACTACCCTCCCGACTGCCTATGATGTTTAT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GTTCCGACTACCCTCCCGACTGCCTATGATGTTTAT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	378	NA
+36	phiX2	+	3076	388	387	423	36	ACCCTCCCGACTGCCTATGATGTTTATCCTTTGAAT	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	ACCCTCCCGACTGCCTATGATGTTTATCCTTTGAAT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	387	NA
+36	phiX2	+	3076	400	399	435	36	GCCTATGATGTTTATCCTTTGAATGGTCGCCATGAT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCCTATGATGTTTATCCTTTGAATGGTCGCCATGAT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	399	NA
+36	phiX2	+	3076	418	417	453	36	TTGAATGGTCGCCATGATGGTGGTTATTATACCGTC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TTGAATGGTCGCCATGATGGTGGTTATTATACCGTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	417	NA
+36	phiX2	+	3076	418	417	453	36	TTGAATGGTCGCCATGATGGTGGTTATTATACCGTC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TTGAATGGTCGCCATGATGGTGGTTATTATACCGTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	417	NA
+36	phiX2	+	3076	428	427	463	36	GCCATGATGGTGGTTATTATACCGTCAAGGACTGTG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCCATGATGGTGGTTATTATACCGTCAAGGACTGTG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	427	NA
+36	phiX2	+	3076	439	438	474	36	GGTTATTATACCGTCAAGGACTGTGTGACTATTGAC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GGTTATTATACCGTCAAGGACTGTGTGACTATTGAC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	438	NA
+36	phiX2	+	3076	444	443	479	36	TTATACCGTCAAGGACTGTGTGACTATTGACGTCCT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TTATACCGTCAAGGACTGTGTGACTATTGACGTCCT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	443	NA
+36	phiX2	+	3076	446	445	481	36	ATACCGTCAAGGACTGTGTGACTATTGACGTCCTTC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	ATACCGTCAAGGACTGTGTGACTATTGACGTCCTTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	445	NA
+36	phiX2	+	3076	452	451	487	36	TCAAGGACTGTGTGACTATTGACGTCCTTCCCCGTA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TCAAGGACTGTGTGACTATTGACGTCCTTCCCCGTA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	451	NA
+36	phiX2	+	3076	453	452	488	36	CAAGGACTGTGTGACTATTGACGTCCTTCCCCGTAC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CAAGGACTGTGTGACTATTGACGTCCTTCCCCGTAC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	452	NA
+36	phiX2	+	3076	456	455	491	36	GGACTGTGTGACTATTGACGTCCTTCCCCGTACGCC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GGACTGTGTGACTATTGACGTCCTTCCCCGTACGCC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	455	NA
+36	phiX2	+	3076	456	455	491	36	GGACTGTGTGACTATTGACGTCCTTCCCCGTACGCC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GGACTGTGTGACTATTGACGTCCTTCCCCGTACGCC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	455	NA
+36	phiX2	+	3076	465	464	500	36	GACTATTGACGTCCTTCCCCGTACGCCGGGCAATAA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GACTATTGACGTCCTTCCCCGTACGCCGGGCAATAA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	464	NA
+36	phiX2	+	3076	505	504	540	36	TATGTTGGTTTCATGGTTTGGTCTAACTTTACCGCT	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TATGTTGGTTTCATGGTTTGGTCTAACTTTACCGCT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	504	NA
+36	phiX2	+	3076	506	505	541	36	ATGTTGGTTTCATGGTTTGGTCTAACTTTACCGCTA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	ATGTTGGTTTCATGGTTTGGTCTAACTTTACCGCTA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	505	NA
+36	phiX2	+	3076	540	539	575	36	TACTAAATGCCGCGGATTGGTTTCGCTGAATCAGGT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TACTAAATGCCGCGGATTGGTTTCGCTGAATCAGGT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	539	NA
+36	phiX2	+	3076	553	552	588	36	GGATTGGTTTCGCTGAATCAGGTTATTAAAGAGATT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GGATTGGTTTCGCTGAATCAGGTTATTAAAGAGATT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	552	NA
+36	phiX2	+	3076	553	552	588	36	GGATTGGTTTCGCTGAATCAGGTTATTAAAGAGATT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GGATTGGTTTCGCTGAATCAGGTTATTAAAGAGATT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	552	NA
+36	phiX2	+	3076	563	562	598	36	CGCTGAATCAGGTTATTAAAGAGATTATTTGTCTCC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CGCTGAATCAGGTTATTAAAGAGATTATTTGTCTCC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	562	NA
+36	phiX2	+	3076	563	562	598	36	CGCTGAATCAGGTTATTAAAGAGATTATTTGTCTCC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CGCTGAATCAGGTTATTAAAGAGATTATTTGTCTCC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	562	NA
+36	phiX2	+	3076	569	568	604	36	ATCAGGTTATTAAAGAGATTATTTGTCTCCAGCCAC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	ATCAGGTTATTAAAGAGATTATTTGTCTCCAGCCAC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	568	NA
+36	phiX2	+	3076	624	623	659	36	TTTGGTGCTATTGCTGGCGGTATTGCTTCTGCTCTT	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TTTGGTGCTATTGCTGGCGGTATTGCTTCTGCTCTT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	623	NA
+36	phiX2	+	3076	633	632	668	36	ATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	ATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	632	NA
+36	phiX2	+	3076	691	690	726	36	GCGGTCAAAAAGCCGCCTCCGGTGGCATTCAAGGTG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCGGTCAAAAAGCCGCCTCCGGTGGCATTCAAGGTG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	690	NA
+36	phiX2	+	3076	705	704	740	36	GCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTACC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTACC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	704	NA
+36	phiX2	+	3076	71	70	106	36	TTAGGAGTTTAATCATGTTTCAGACTTTTATTTCTC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TTAGGAGTTTAATCATGTTTCAGACTTTTATTTCTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	70	NA
+36	phiX2	+	3076	711	710	746	36	GGTGGCATTCAAGGTGATGTGCTTGCTACCGATAAC	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GGTGGCATTCAAGGTGATGTGCTTGCTACCGATAAC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	710	NA
+36	phiX2	+	3076	772	771	807	36	GTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	771	NA
+36	phiX2	+	3076	783	782	818	36	GCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	782	NA
+36	phiX2	+	3076	786	785	821	36	ATTCAAGGCTCTAATGTTCCTAACCCTGATGAGGCC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	ATTCAAGGCTCTAATGTTCCTAACCCTGATGAGGCC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	785	NA
+36	phiX2	+	3076	790	789	825	36	AAGGCTCTAATGTTCCTAACCCTGATGAGGCCGCCC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	AAGGCTCTAATGTTCCTAACCCTGATGAGGCCGCCC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	789	NA
+36	phiX2	+	3076	809	808	844	36	CCCTGATGAGGCCGCCCCTAGTTTTGTTTCTGGTGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	CCCTGATGAGGCCGCCCCTAGTTTTGTTTCTGGTGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	808	NA
+36	phiX2	+	3076	817	816	852	36	AGGCCGCCCCTAGTTTTGTTTCTGGTGCTATGGCTA	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	AGGCCGCCCCTAGTTTTGTTTCTGGTGCTATGGCTA	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	816	NA
+36	phiX2	+	3076	841	840	876	36	GTGCTATGGCTAAAGCTGGTAAAGGACTTCTTGAAG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GTGCTATGGCTAAAGCTGGTAAAGGACTTCTTGAAG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	840	NA
+36	phiX2	+	3076	857	856	892	36	TGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	856	NA
+36	phiX2	+	3076	903	902	938	36	GTTTCTGATAAGTTGCTTGATTTGGTTGGACTTGGT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GTTTCTGATAAGTTGCTTGATTTGGTTGGACTTGGT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	902	NA
+36	phiX2	+	3076	940	939	975	36	GCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTG	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTG	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	939	NA
+36	phiX2	+	3076	951	950	986	36	GCTGATAAAGGAAAGGATACTCGTGATTATCTTGCT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	GCTGATAAAGGAAAGGATACTCGTGATTATCTTGCT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	950	NA
+36	phiX2	+	3076	961	960	996	36	GAAAGGATACTCGTGATTATCTTGCTGCTGCATTTC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	GAAAGGATACTCGTGATTATCTTGCTGCTGCATTTC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	960	NA
+36	phiX2	+	3076	967	966	1002	36	ATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	ATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	966	NA
+36	phiX2	+	3076	968	967	1003	36	TACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCT	HWI-EAS91_1_306UPAAXX	+	36	1	0	36	1	0	36	36	TACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCT	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	967	NA
+36	phiX2	+	3076	974	973	1009	36	TGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGC	HWI-EAS91_1_306UPAAXX	-	36	1	0	36	1	0	36	36	TGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGC	....................................	36M	36/36	100.0%	36/36	100.0%	0/36	0.0%	973	NA
Binary file test-data/phiX.2bit has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/phiX.fasta	Mon Nov 26 09:47:51 2012 -0500
@@ -0,0 +1,79 @@
+>phiX174
+GAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTATCTT
+GATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAATGAGAAA
+ATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATCAACTAACGATTCTG
+TCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTA
+GATATGAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATC
+TGAGTCCGATGCTGTTCAACCACTAATAGGTAAGAAATCATGAGTCAAGTTACTGAACAATCCGTACGTT
+TCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTT
+CGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCT
+TGCGTTTATGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG
+TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTAC
+GGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTA
+CGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAG
+TGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACT
+AAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGC
+CCCTTACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCA
+TCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGAC
+TCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTA
+CTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAA
+GGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTT
+GGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACA
+ACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGC
+TCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTT
+TCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGC
+ATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCGTGATGTTATTTCTTCATTTGGAGGTAAAAC
+CTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTT
+GATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGC
+CGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGAC
+TAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTG
+TATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGT
+TTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTCTCCTGCTTATCACCTTCTTGA
+AGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTACTTATTCGCCACCATGAT
+TATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTT
+ATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGATAAAAGATTGAGTGTGAGGTTATAAC
+GCCGAAGCGGTAAAAATTTTAATTTTTGCCGCTGAGGGGTTGACCAAGCGAAGCGCGGTAGGTTTTCTGC
+TTAGGAGTTTAATCATGTTTCAGACTTTTATTTCTCGCCATAATTCAAACTTTTTTTCTGATAAGCTGGT
+TCTCACTTCTGTTACTCCAGCTTCTTCGGCACCTGTTTTACAGACACCTAAAGCTACATCGTCAACGTTA
+TATTTTGATAGTTTGACGGTTAATGCTGGTAATGGTGGTTTTCTTCATTGCATTCAGATGGATACATCTG
+TCAACGCCGCTAATCAGGTTGTTTCTGTTGGTGCTGATATTGCTTTTGATGCCGACCCTAAATTTTTTGC
+CTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACTACCCTCCCGACTGCCTATGATGTTTATCCTTTG
+AATGGTCGCCATGATGGTGGTTATTATACCGTCAAGGACTGTGTGACTATTGACGTCCTTCCCCGTACGC
+CGGGCAATAATGTTTATGTTGGTTTCATGGTTTGGTCTAACTTTACCGCTACTAAATGCCGCGGATTGGT
+TTCGCTGAATCAGGTTATTAAAGAGATTATTTGTCTCCAGCCACTTAAGTGAGGTGATTTATGTTTGGTG
+CTATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGTCAAAA
+AGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTACCGATAACAATACTGTAGGCATGGGTGATGCT
+GGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAGGCCGCCCCTAGTTTTGTTTCTG
+GTGCTATGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGA
+TAAGTTGCTTGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTAT
+CTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGG
+TTGACGCCGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGA
+GATGCAAAATGAGACTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGAC
+CAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTA
+TGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCA
+AACGGCTGGTCAGTATTTTACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGAC
+TTAGTTCATCAGCAAACGCAGAATCAGCGGTATGGCTCTTCTCATATTGGCGCTACTGCAAAGGATATTT
+CTAATGTCGTCACTGATGCTGCTTCTGGTGTGGTTGATATTTTTCATGGTATTGATAAAGCTGTTGCCGA
+TACTTGGAACAATTTCTGGAAAGACGGTAAAGCTGATGGTATTGGCTCTAATTTGTCTAGGAAATAACCG
+TCAGGATTGACACCCTCCCAATTGTATGTTTTCATGCCTCCAAATCTTGGAGGCTTTTTTATGGTTCGTT
+CTTATTACCCTTCTGAATGTCACGCTGATTATTTTGACTTTGAGCGTATCGAGGCTCTTAAACCTGCTAT
+TGAGGCTTGTGGCATTTCTACTCTTTCTCAATCCCCAATGCTTGGCTTCCATAAGCAGATGGATAACCGC
+ATCAAGCTCTTGGAAGAGATTCTGTCTTTTCGTATGCAGGGCGTTGAGTTCGATAATGGTGATATGTATG
+TTGACGGCCATAAGGCTGCTTCTGACGTTCGTGATGAGTTTGTATCTGTTACTGAGAAGTTAATGGATGA
+ATTGGCACAATGCTACAATGTGCTCCCCCAACTTGATATTAATAACACTATAGACCACCGCCCCGAAGGG
+GACGAAAAATGGTTTTTAGAGAACGAGAAGACGGTTACGCAGTTTTGCCGCAAGCTGGCTGCTGAACGCC
+CTCTTAAGGATATTCGCGATGAGTATAATTACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATT
+GCTGGAGGCCTCCACTATGAAATCGCGTAGAGGCTTTACTATTCAGCGTTTGATGAATGCAATGCGACAG
+GCTCATGCTGATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTT
+ATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCCGAGGGTCG
+CAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTACAGCTAATGGC
+CGTCTTCATTTCCATGCGGTGCATTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTC
+GTCGGGTACGCAATCGCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCAT
+CGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAG
+CCGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACGTTAACAAAAAGTCAGATA
+TGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAAAACCAAGCTGTCGCTACT
+TCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACAATGACAAATCTG
+TCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGC
+AGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACC
+TGTGACGACAAATCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCA
+
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/phiX_split.fasta	Mon Nov 26 09:47:51 2012 -0500
@@ -0,0 +1,79 @@
+>phiX1
+GAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTATCTT
+GATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAATGAGAAA
+ATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATCAACTAACGATTCTG
+TCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTA
+GATATGAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATC
+TGAGTCCGATGCTGTTCAACCACTAATAGGTAAGAAATCATGAGTCAAGTTACTGAACAATCCGTACGTT
+TCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTT
+CGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCT
+TGCGTTTATGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG
+TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTAC
+GGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTA
+CGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCGGAAGGAG
+TGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACT
+AAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGC
+CCCTTACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCA
+TCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGAC
+TCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTA
+CTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAA
+GGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTT
+GGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACA
+ACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGC
+TCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTT
+TCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGC
+ATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAAC
+CTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTT
+GATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGC
+CGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGAC
+TAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTG
+TATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGT
+TTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTCTCCTGCTTATCACCTTCTTGA
+AGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTACTTATTCGCCACCATGAT
+TATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTT
+ATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGATAAAAGATTGAGTGTGAGGTTATAAC
+>phiX2
+GCCGAAGCGGTAAAAATTTTAATTTTTGCCGCTGAGGGGTTGACCAAGCGAAGCGCGGTAGGTTTTCTGC
+TTAGGAGTTTAATCATGTTTCAGACTTTTATTTCTCGCCATAATTCAAACTTTTTTTCTGATAAGCTGGT
+TCTCACTTCTGTTACTCCAGCTTCTTCGGCACCTGTTTTACAGACACCTAAAGCTACATCGTCAACGTTA
+TATTTTGATAGTTTGACGGTTAATGCTGGTAATGGTGGTTTTCTTCATTGCATTCAGATGGATACATCTG
+TCAACGCCGCTAATCAGGTTGTTTCTGTTGGTGCTGATATTGCTTTTGATGCCGACCCTAAATTTTTTGC
+CTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACTACCCTCCCGACTGCCTATGATGTTTATCCTTTG
+AATGGTCGCCATGATGGTGGTTATTATACCGTCAAGGACTGTGTGACTATTGACGTCCTTCCCCGTACGC
+CGGGCAATAACGTTTATGTTGGTTTCATGGTTTGGTCTAACTTTACCGCTACTAAATGCCGCGGATTGGT
+TTCGCTGAATCAGGTTATTAAAGAGATTATTTGTCTCCAGCCACTTAAGTGAGGTGATTTATGTTTGGTG
+CTATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGTCAAAA
+AGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTACCGATAACAATACTGTAGGCATGGGTGATGCT
+GGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAGGCCGCCCCTAGTTTTGTTTCTG
+GTGCTATGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGA
+TAAGTTGCTTGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTAT
+CTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGG
+TTGACGCCGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGA
+GATGCAAAATGAGACTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGAC
+CAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTA
+TGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCA
+AACGGCTGGTCAGTATTTTACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGAC
+TTAGTTCATCAGCAAACGCAGAATCAGCGGTATGGCTCTTCTCATATTGGCGCTACTGCAAAGGATATTT
+CTAATGTCGTCACTGATGCTGCTTCTGGTGTGGTTGATATTTTTCATGGTATTGATAAAGCTGTTGCCGA
+TACTTGGAACAATTTCTGGAAAGACGGTAAAGCTGATGGTATTGGCTCTAATTTGTCTAGGAAATAACCG
+TCAGGATTGACACCCTCCCAATTGTATGTTTTCATGCCTCCAAATCTTGGAGGCTTTTTTATGGTTCGTT
+CTTATTACCCTTCTGAATGTCACGCTGATTATTTTGACTTTGAGCGTATCGAGGCTCTTAAACCTGCTAT
+TGAGGCTTGTGGCATTTCTACTCTTTCTCAATCCCCAATGCTTGGCTTCCATAAGCAGATGGATAACCGC
+ATCAAGCTCTTGGAAGAGATTCTGTCTTTTCGTATGCAGGGCGTTGAGTTCGATAATGGTGATATGTATG
+TTGACGGCCATAAGGCTGCTTCTGACGTTCGTGATGAGTTTGTATCTGTTACTGAGAAGTTAATGGATGA
+ATTGGCACAATGCTACAATGTGCTCCCCCAACTTGATATTAATAACACTATAGACCACCGCCCCGAAGGG
+GACGAAAAATGGTTTTTAGAGAACGAGAAGACGGTTACGCAGTTTTGCCGCAAGCTGGCTGCTGAACGCC
+CTCTTAAGGATATTCGCGATGAGTATAATTACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATT
+GCTGGAGGCCTCCACTATGAAATCGCGTAGAGGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAG
+GCTCATGCTGATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTT
+ATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCCGAGGGTCG
+CAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTACAGCTAATGGC
+CGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTC
+GTCGGGTACGCAATCGCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCAT
+CGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAG
+CCGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACGTTAACAAAAAGTCAGATA
+TGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAAAACCAAGCTGTCGCTACT
+TCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACAATGACAAATCTG
+TCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGC
+AGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACC
+TGTGACGACAAATCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCA
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/lastz_seqs.loc.sample	Mon Nov 26 09:47:51 2012 -0500
@@ -0,0 +1,30 @@
+#This is a sample file distributed with Galaxy that enables tools
+#to use a directory of 2bit genome files for use with Lastz. You will
+#need to supply these files and then create a lastz_seqs.loc file
+#similar to this one (store it in this directory) that points to
+#the directories in which those files are stored. The lastz_seqs.loc
+#file has this format (white space characters are TAB characters):
+#
+#<unique_build_id>	<display_name>		<file_path>
+#
+#So, for example, if your lastz_seqs.loc began like this:
+#
+#hg18	Human (Homo sapiens): hg18		/depot/data2/galaxy/twobit/hg18.2bit
+#hg19	Human (Homo sapiens): hg19		/depot/data2/galaxy/twobit/hg19.2bit
+#mm9	Mouse (Mus musculus): mm9		/depot/data2/galaxy/twobit/mm9.2bit
+#
+#then your /depot/data2/galaxy/twobit/ directory
+#would need to contain the following 2bit files:
+#
+#-rw-r--r--  1 james    universe 830134 2005-09-13 10:12 hg18.2bit
+#-rw-r--r--  1 james    universe 527388 2005-09-13 10:12 hg19.2bit
+#-rw-r--r--  1 james    universe 269808 2005-09-13 10:12 mm9.2bit
+#
+#Your lastz_seqs.loc file should include an entry per line for 
+#each file you have stored that you want to be available. Note that 
+#your files should all have the extension '2bit'.
+#
+#Note that for backwards compatibility with workflows, the unique ID of
+#an entry must be the path that was in the original loc file, because that
+#is the value stored in the workflow for that parameter. 
+#
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_data_table_conf.xml.sample	Mon Nov 26 09:47:51 2012 -0500
@@ -0,0 +1,8 @@
+<!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc-->
+<tables>
+    <!-- Locations of 2bit sequence files for use in Lastz -->
+    <table name="lastz_seqs" comment_char="#">
+        <columns>value, name, path</columns>
+        <file path="tool-data/lastz_seqs.loc" />
+    </table>
+</tables>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Nov 26 09:47:51 2012 -0500
@@ -0,0 +1,26 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="lastz" version="1.02.00">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url" target_filename="lastz-distrib-1.02.00.tar.gz">http://www.bx.psu.edu/miller_lab/dist/lastz-1.02.00.tar.gz</action>
+                <action type="shell_command">make</action>
+                <action type="move_file">
+                    <source>src/lastz</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+                <action type="move_file">
+                    <source>src/lastz_D</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful for sequences produced by NGS sequencing technologies such as Roche 454.
+        </readme>
+    </package>
+</tool_dependency>
+