Mercurial > repos > devteam > lastz
changeset 3:d054d95585b1 draft
Uploaded a tool dependency definition that defines a complex repository dependency on package_lastz_1_02_00.
| author | devteam |
|---|---|
| date | Fri, 21 Feb 2014 14:25:04 -0500 |
| parents | 12d4359b7e2f |
| children | 60afcc2c1d05 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 1 insertions(+), 21 deletions(-) [+] |
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--- a/tool_dependencies.xml Mon Apr 01 15:24:44 2013 -0400 +++ b/tool_dependencies.xml Fri Feb 21 14:25:04 2014 -0500 @@ -1,26 +1,6 @@ <?xml version="1.0"?> <tool_dependency> <package name="lastz" version="1.02.00"> - <install version="1.0"> - <actions> - <action type="download_by_url" target_filename="lastz-distrib-1.02.00.tar.gz">http://www.bx.psu.edu/miller_lab/dist/lastz-1.02.00.tar.gz</action> - <action type="shell_command">make</action> - <action type="move_file"> - <source>src/lastz</source> - <destination>$INSTALL_DIR/bin</destination> - </action> - <action type="move_file"> - <source>src/lastz_D</source> - <destination>$INSTALL_DIR/bin</destination> - </action> - <action type="set_environment"> - <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> - </action> - </actions> - </install> - <readme> -LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful for sequences produced by NGS sequencing technologies such as Roche 454. - </readme> + <repository changeset_revision="1d4a5e764543" name="package_lastz_1_02_00" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency> -