Mercurial > repos > devteam > merge_cols
annotate mergeCols.xml @ 2:dd40b1e9eebe draft
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/merge_cols commit dc2e3b631f515e905d5645baa4fb49df8e8cc0d5"
author | devteam |
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date | Wed, 03 Jun 2020 10:22:39 -0400 |
parents | f2aac0c5c60d |
children | ae7843d06f8f |
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dd40b1e9eebe
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/merge_cols commit dc2e3b631f515e905d5645baa4fb49df8e8cc0d5"
devteam
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1 <tool id="mergeCols1" name="Merge Columns" version="1.0.2"> |
0 | 2 <description>together</description> |
2
dd40b1e9eebe
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/merge_cols commit dc2e3b631f515e905d5645baa4fb49df8e8cc0d5"
devteam
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3 <requirements> |
dd40b1e9eebe
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/merge_cols commit dc2e3b631f515e905d5645baa4fb49df8e8cc0d5"
devteam
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4 <requirement type="package" version="3.7">python</requirement> |
dd40b1e9eebe
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/merge_cols commit dc2e3b631f515e905d5645baa4fb49df8e8cc0d5"
devteam
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1
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5 </requirements> |
0 | 6 <command interpreter="python"> |
7 mergeCols.py | |
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f2aac0c5c60d
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greg <greg@bx.psu.edu>
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8 "${input1}" |
f2aac0c5c60d
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greg <greg@bx.psu.edu>
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9 "${out_file1}" |
f2aac0c5c60d
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greg <greg@bx.psu.edu>
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10 "${col1}" |
f2aac0c5c60d
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greg <greg@bx.psu.edu>
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11 "${col2}" |
0 | 12 #for $col in $columns |
13 ${col.datacol} | |
14 #end for | |
15 </command> | |
16 <inputs> | |
17 <param format="tabular" name="input1" type="data" label="Select data" help="Dataset missing? See TIP below."/> | |
18 <param name="col1" label="Merge column" type="data_column" data_ref="input1" /> | |
19 <param name="col2" label="with column" type="data_column" data_ref="input1" help="Need to add more columns? Use controls below."/> | |
20 <repeat name="columns" title="Columns"> | |
21 <param name="datacol" label="Add column" type="data_column" data_ref="input1" /> | |
22 </repeat> | |
23 </inputs> | |
24 <outputs> | |
25 <data format="tabular" name="out_file1" /> | |
26 </outputs> | |
27 <tests> | |
28 <test> | |
29 <param name="input1" value="1.bed"/> | |
30 <param name="col1" value="4" /> | |
31 <param name="col2" value="1" /> | |
32 <param name="datacol" value="6" /> | |
33 <output name="out_file1" file="mergeCols.dat"/> | |
34 </test> | |
35 </tests> | |
36 <help> | |
37 | |
38 .. class:: infomark | |
39 | |
40 **TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert* | |
41 | |
42 ----- | |
43 | |
44 **What it does** | |
45 | |
46 This tool merges columns together. Any number of valid columns can be merged in any order. | |
47 | |
48 ----- | |
49 | |
50 **Example** | |
51 | |
52 Input dataset (five columns: c1, c2, c3, c4, and c5):: | |
53 | |
54 1 10 1000 gene1 chr | |
55 2 100 1500 gene2 chr | |
56 | |
57 merging columns "**c5,c1**" will return:: | |
58 | |
59 1 10 1000 gene1 chr chr1 | |
60 2 100 1500 gene2 chr chr2 | |
61 | |
62 .. class:: warningmark | |
63 | |
64 Note that all original columns are preserved and the result of merge is added as the rightmost column. | |
65 </help> | |
66 </tool> |