comparison tools/ncbi_blast_plus/README.rst @ 18:577d9c12411a draft

v0.1.06, now using BLAST+ 2.2.31

17:697f40151eaf

          Galaxy inputs must still use ``.extra_files_path`` rather than the
          more consise ``.extra_files`` available for output files (Issue #69)
v0.1.05 - Define ``parallelism`` tag via a macro (internal change only).
        - Define wrapper versions via a macro (internal change only).
        - Update citation information now GigaScience paper is out.
======= ======================================================================


Bug Reports
===========

For pushing a release to the test or main "Galaxy Tool Shed", use the following
Planemo commands (which requires you have set your Tool Shed access details in
``~/.planemo.yml`` and that you have access rights on the Tool Shed)::

    $ planemo shed_update --shed_target testtoolshed --check_diff ~/repositories/galaxy_blast/tools/ncbi_blast_plus/
    ...

or::

    $ planemo shed_update --shed_target toolshed --check_diff ~/repositories/galaxy_blast/tools/ncbi_blast_plus/
    ...

To just build and check the tar ball, use::

    $ planemo shed_upload --tar_only  ~/repositories/galaxy_blast/tools/ncbi_blast_plus/

18:577d9c12411a

          Galaxy inputs must still use ``.extra_files_path`` rather than the
          more consise ``.extra_files`` available for output files (Issue #69)
v0.1.05 - Define ``parallelism`` tag via a macro (internal change only).
        - Define wrapper versions via a macro (internal change only).
        - Update citation information now GigaScience paper is out.
v0.1.06 - Now depends on ``package_blast_plus_2_2_31`` in ToolShed.
        - Tests updated for BLAST+ 2.2.31 instead of BLAST+ 2.2.30.
======= ======================================================================


Bug Reports
===========

For pushing a release to the test or main "Galaxy Tool Shed", use the following
Planemo commands (which requires you have set your Tool Shed access details in
``~/.planemo.yml`` and that you have access rights on the Tool Shed)::

    $ planemo shed_update -t testtoolshed --check_diff ~/repositories/galaxy_blast/tools/ncbi_blast_plus/
    ...

or::

    $ planemo shed_update -t toolshed --check_diff ~/repositories/galaxy_blast/tools/ncbi_blast_plus/
    ...

To just build and check the tar ball, use::

    $ planemo shed_upload --tar_only  ~/repositories/galaxy_blast/tools/ncbi_blast_plus/