Mercurial > repos > devteam > ncbi_blast_plus
comparison tools/ncbi_blast_plus/README.rst @ 18:577d9c12411a draft
v0.1.06, now using BLAST+ 2.2.31
author | peterjc |
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date | Mon, 07 Sep 2015 04:44:24 -0400 |
parents | 697f40151eaf |
children | 7f3c448e119b |
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17:697f40151eaf | 18:577d9c12411a |
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219 Galaxy inputs must still use ``.extra_files_path`` rather than the | 219 Galaxy inputs must still use ``.extra_files_path`` rather than the |
220 more consise ``.extra_files`` available for output files (Issue #69) | 220 more consise ``.extra_files`` available for output files (Issue #69) |
221 v0.1.05 - Define ``parallelism`` tag via a macro (internal change only). | 221 v0.1.05 - Define ``parallelism`` tag via a macro (internal change only). |
222 - Define wrapper versions via a macro (internal change only). | 222 - Define wrapper versions via a macro (internal change only). |
223 - Update citation information now GigaScience paper is out. | 223 - Update citation information now GigaScience paper is out. |
224 v0.1.06 - Now depends on ``package_blast_plus_2_2_31`` in ToolShed. | |
225 - Tests updated for BLAST+ 2.2.31 instead of BLAST+ 2.2.30. | |
224 ======= ====================================================================== | 226 ======= ====================================================================== |
225 | 227 |
226 | 228 |
227 Bug Reports | 229 Bug Reports |
228 =========== | 230 =========== |
243 | 245 |
244 For pushing a release to the test or main "Galaxy Tool Shed", use the following | 246 For pushing a release to the test or main "Galaxy Tool Shed", use the following |
245 Planemo commands (which requires you have set your Tool Shed access details in | 247 Planemo commands (which requires you have set your Tool Shed access details in |
246 ``~/.planemo.yml`` and that you have access rights on the Tool Shed):: | 248 ``~/.planemo.yml`` and that you have access rights on the Tool Shed):: |
247 | 249 |
248 $ planemo shed_update --shed_target testtoolshed --check_diff ~/repositories/galaxy_blast/tools/ncbi_blast_plus/ | 250 $ planemo shed_update -t testtoolshed --check_diff ~/repositories/galaxy_blast/tools/ncbi_blast_plus/ |
249 ... | 251 ... |
250 | 252 |
251 or:: | 253 or:: |
252 | 254 |
253 $ planemo shed_update --shed_target toolshed --check_diff ~/repositories/galaxy_blast/tools/ncbi_blast_plus/ | 255 $ planemo shed_update -t toolshed --check_diff ~/repositories/galaxy_blast/tools/ncbi_blast_plus/ |
254 ... | 256 ... |
255 | 257 |
256 To just build and check the tar ball, use:: | 258 To just build and check the tar ball, use:: |
257 | 259 |
258 $ planemo shed_upload --tar_only ~/repositories/galaxy_blast/tools/ncbi_blast_plus/ | 260 $ planemo shed_upload --tar_only ~/repositories/galaxy_blast/tools/ncbi_blast_plus/ |