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view ncbi_blast_plus/test-data/tblastn_four_human_vs_rhodopsin.tabular @ 1:27d7e1deada4 draft

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Uploaded v0.0.12 of the NCBI BLAST+ wrappers. Implements genetic code option for translation searches. Changes <parallelism> to 1000 sequences at a time (to cope with very large sets of queries where BLAST+ can become memory hungry). Include warning that BLAST+ with subject FASTA gives pairwise e-values.
author peterjc
date Thu, 23 Aug 2012 07:24:38 -0400
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sp|P08100|OPSD_HUMAN	gi|57163782|ref|NM_001009242.1|	96.55	348	12	0	1	348	1	1044	0.0	 732
sp|P08100|OPSD_HUMAN	gi|2734705|gb|U59921.1|BBU59921	84.80	342	51	1	1	341	42	1067	0.0	 646
sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	93.24	74	5	0	239	312	3147	3368	1e-72	 151
sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	91.53	59	5	0	177	235	2855	3031	1e-72	 126
sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	96.40	111	4	0	11	121	1	333	1e-64	 229
sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	93.22	59	4	0	119	177	1404	1580	1e-32	 122
sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	88.46	26	3	0	312	337	4222	4299	6e-13	57.7
sp|P08100|OPSD_HUMAN	gi|283855822|gb|GQ290312.1|	95.09	326	16	0	11	336	1	978	0.0	 658
sp|P08100|OPSD_HUMAN	gi|18148870|dbj|AB062417.1|	93.39	348	23	0	1	348	1	1044	0.0	 711
sp|P08100|OPSD_HUMAN	gi|12583664|dbj|AB043817.1|	82.16	342	60	1	1	341	23	1048	0.0	 626