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changeset 21:7538e2bfcd41 draft

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v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
author peterjc
date Wed, 19 Apr 2017 05:27:19 -0400
parents 3034ce97dd33
children 6f386c5dc4fb
files test-data/blastn_arabidopsis.extended.tabular test-data/blastn_arabidopsis.standard.tabular test-data/blastn_chimera_vs_rhodopsin_db.tabular test-data/blastn_chimera_vs_three_human_and_rhodopsin_db.tabular test-data/blastn_chimera_vs_three_human_db.tabular test-data/blastn_chimera_vs_three_human_max1.tabular test-data/blastn_chimera_vs_three_human_max1.txt test-data/blastn_rhodopsin_vs_three_human.columns.tabular test-data/blastn_rhodopsin_vs_three_human.tabular test-data/blastn_rhodopsin_vs_three_human.xml test-data/blastn_rhodopsin_vs_three_human_converted.tabular test-data/blastp_four_human_vs_rhodopsin.tabular test-data/blastp_four_human_vs_rhodopsin.xml test-data/blastp_four_human_vs_rhodopsin_converted.tabular test-data/blastp_four_human_vs_rhodopsin_converted_ext.tabular test-data/blastp_four_human_vs_rhodopsin_ext.tabular test-data/blastp_human_vs_pdb_seg_no_converted_ext.tabular test-data/blastp_human_vs_pdb_seg_no_converted_std.tabular test-data/blastp_rhodopsin_vs_four_human.tabular test-data/blastp_sample_converted.tabular test-data/blastx_rhodopsin_vs_four_human.tabular test-data/blastx_rhodopsin_vs_four_human.xml test-data/blastx_rhodopsin_vs_four_human_all.tabular test-data/blastx_rhodopsin_vs_four_human_converted.tabular test-data/blastx_rhodopsin_vs_four_human_converted_ext.tabular test-data/blastx_rhodopsin_vs_four_human_ext.tabular test-data/blastx_sample_converted.tabular test-data/cd00003_and_cd00008.pin test-data/four_human_proteins.dbinfo.txt test-data/four_human_proteins.fasta.log.txt test-data/four_human_proteins.fasta.pin test-data/four_human_proteins_taxid.fasta.log.txt test-data/four_human_proteins_taxid.fasta.pin test-data/rhodopsin_bufo.fasta test-data/rhodopsin_nucs.dbinfo.txt test-data/rhodopsin_nucs.fasta.log.txt test-data/rhodopsin_nucs.fasta.nin test-data/rhodopsin_nucs.fasta.nsq test-data/rhodopsin_nucs.no_gi.fasta test-data/tblastn_four_human_vs_rhodopsin.html test-data/tblastn_four_human_vs_rhodopsin.tabular test-data/tblastn_four_human_vs_rhodopsin.xml test-data/tblastn_four_human_vs_rhodopsin_deflines.tabular test-data/tblastn_four_human_vs_rhodopsin_ext.tabular test-data/tblastx_rhodopsin_vs_three_human.tabular test-data/three_human_mRNA.dbinfo.txt test-data/three_human_mRNA.fasta.log.txt test-data/three_human_mRNA.fasta.nin tools/ncbi_blast_plus/README.rst tools/ncbi_blast_plus/blastxml_to_tabular.py tools/ncbi_blast_plus/check_no_duplicates.py tools/ncbi_blast_plus/ncbi_blastdbcmd_wrapper.xml tools/ncbi_blast_plus/ncbi_macros.xml tools/ncbi_blast_plus/ncbi_tblastn_wrapper.xml tools/ncbi_blast_plus/tool_dependencies.xml
diffstat 55 files changed, 960 insertions(+), 2639 deletions(-) [+]
line wrap: on
line diff
--- a/test-data/blastn_arabidopsis.extended.tabular	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/blastn_arabidopsis.extended.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -1,1 +1,1 @@
-chunk_of_plant	chrIII	100.00	630	0	0	1	630	4341	4970	0.0	1164	chrIII	630	630	630	0	100.00	1	1	GATGTTCAATACTGTTTCCAACAAAAAGATTGTTGTCCTCGAGTTCGCCTTCAAGAAAGACACGAGAGAGACTCCAGCCATTGACGTCTGCAAAGGTTTGTTAGGAGACAAGGCCCGAATCAGCATCTATGATCCACAAGTCACGGAAGAACAAATCCAAAGAGACTTAACCATGAACACATTCGACTGGGACCATCCACTTCACCTCCAACCCATGAGTCCAACCACTGTGAAACAAGTCTCAGTTGCTTGGGACGCTTACGCTGCCACCAAAGACGCCCACGGAATCTGCTTGTTAACCGAGTGGGACGAGTATAAGACGCTTGACTATGAGCGGATTTTTGAAAACATGCAGAAACCAGCGTTTGTCTTCGATGGCAGAAATGTTTTTGATGCAGAGAAGCTGAGGAAGATAGGGTTTATTGTTTACTCTATTGGTAAGCCGTTGGACCAGTGGCACATGCCTGCTCTTGCTTAGCTCAGACTCTTTGCCCTTTCTCAAGATTTGGATTGTTTTTCTCTCTGTTGCTTATATCAAATAATTTGTTCTGTTTCTTCTTGACGAGATATTTTCCTATACTTATTATGTTGGTTAGAACAAGAGACTAGGTTTGGTTATTATTGCTAACT	GATGTTCAATACTGTTTCCAACAAAAAGATTGTTGTCCTCGAGTTCGCCTTCAAGAAAGACACGAGAGAGACTCCAGCCATTGACGTCTGCAAAGGTTTGTTAGGAGACAAGGCCCGAATCAGCATCTATGATCCACAAGTCACGGAAGAACAAATCCAAAGAGACTTAACCATGAACACATTCGACTGGGACCATCCACTTCACCTCCAACCCATGAGTCCAACCACTGTGAAACAAGTCTCAGTTGCTTGGGACGCTTACGCTGCCACCAAAGACGCCCACGGAATCTGCTTGTTAACCGAGTGGGACGAGTATAAGACGCTTGACTATGAGCGGATTTTTGAAAACATGCAGAAACCAGCGTTTGTCTTCGATGGCAGAAATGTTTTTGATGCAGAGAAGCTGAGGAAGATAGGGTTTATTGTTTACTCTATTGGTAAGCCGTTGGACCAGTGGCACATGCCTGCTCTTGCTTAGCTCAGACTCTTTGCCCTTTCTCAAGATTTGGATTGTTTTTCTCTCTGTTGCTTATATCAAATAATTTGTTCTGTTTCTTCTTGACGAGATATTTTCCTATACTTATTATGTTGGTTAGAACAAGAGACTAGGTTTGGTTATTATTGCTAACT	630	23459830	gi|240255695|ref|NC_003074.8| Arabidopsis thaliana chromosome 3, complete sequence
+chunk_of_plant	chrIII	100.000	630	0	0	1	630	4341	4970	0.0	1164	chrIII	630	630	630	0	100.00	1	1	GATGTTCAATACTGTTTCCAACAAAAAGATTGTTGTCCTCGAGTTCGCCTTCAAGAAAGACACGAGAGAGACTCCAGCCATTGACGTCTGCAAAGGTTTGTTAGGAGACAAGGCCCGAATCAGCATCTATGATCCACAAGTCACGGAAGAACAAATCCAAAGAGACTTAACCATGAACACATTCGACTGGGACCATCCACTTCACCTCCAACCCATGAGTCCAACCACTGTGAAACAAGTCTCAGTTGCTTGGGACGCTTACGCTGCCACCAAAGACGCCCACGGAATCTGCTTGTTAACCGAGTGGGACGAGTATAAGACGCTTGACTATGAGCGGATTTTTGAAAACATGCAGAAACCAGCGTTTGTCTTCGATGGCAGAAATGTTTTTGATGCAGAGAAGCTGAGGAAGATAGGGTTTATTGTTTACTCTATTGGTAAGCCGTTGGACCAGTGGCACATGCCTGCTCTTGCTTAGCTCAGACTCTTTGCCCTTTCTCAAGATTTGGATTGTTTTTCTCTCTGTTGCTTATATCAAATAATTTGTTCTGTTTCTTCTTGACGAGATATTTTCCTATACTTATTATGTTGGTTAGAACAAGAGACTAGGTTTGGTTATTATTGCTAACT	GATGTTCAATACTGTTTCCAACAAAAAGATTGTTGTCCTCGAGTTCGCCTTCAAGAAAGACACGAGAGAGACTCCAGCCATTGACGTCTGCAAAGGTTTGTTAGGAGACAAGGCCCGAATCAGCATCTATGATCCACAAGTCACGGAAGAACAAATCCAAAGAGACTTAACCATGAACACATTCGACTGGGACCATCCACTTCACCTCCAACCCATGAGTCCAACCACTGTGAAACAAGTCTCAGTTGCTTGGGACGCTTACGCTGCCACCAAAGACGCCCACGGAATCTGCTTGTTAACCGAGTGGGACGAGTATAAGACGCTTGACTATGAGCGGATTTTTGAAAACATGCAGAAACCAGCGTTTGTCTTCGATGGCAGAAATGTTTTTGATGCAGAGAAGCTGAGGAAGATAGGGTTTATTGTTTACTCTATTGGTAAGCCGTTGGACCAGTGGCACATGCCTGCTCTTGCTTAGCTCAGACTCTTTGCCCTTTCTCAAGATTTGGATTGTTTTTCTCTCTGTTGCTTATATCAAATAATTTGTTCTGTTTCTTCTTGACGAGATATTTTCCTATACTTATTATGTTGGTTAGAACAAGAGACTAGGTTTGGTTATTATTGCTAACT	630	23459830	gi|240255695|ref|NC_003074.8| Arabidopsis thaliana chromosome 3, complete sequence
--- a/test-data/blastn_arabidopsis.standard.tabular	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/blastn_arabidopsis.standard.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -1,1 +1,1 @@
-chunk_of_plant	chrIII	100.00	630	0	0	1	630	4341	4970	0.0	1164
+chunk_of_plant	chrIII	100.000	630	0	0	1	630	4341	4970	0.0	1164
--- a/test-data/blastn_chimera_vs_rhodopsin_db.tabular	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/blastn_chimera_vs_rhodopsin_db.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -1,8 +1,8 @@
-chimera	gi|57163782|ref|NM_001009242.1|	92.31	1014	78	0	8881	9894	34	1047	0.0	1441
-chimera	gi|283855822|gb|GQ290312.1|	91.53	956	81	0	8881	9836	4	959	0.0	1317
-chimera	gi|18148870|dbj|AB062417.1|	87.65	1012	123	2	8884	9894	37	1047	0.0	1175
-chimera	gi|283855845|gb|GQ290303.1|	91.52	330	28	0	8881	9210	4	333	8e-130	455
-chimera	gi|283855845|gb|GQ290303.1|	91.36	243	19	2	9542	9783	3127	3368	1e-92	331
-chimera	gi|283855845|gb|GQ290303.1|	94.22	173	10	0	9208	9380	1410	1582	1e-72	265
-chimera	gi|283855845|gb|GQ290303.1|	92.94	170	12	0	9375	9544	2854	3023	2e-67	248
-chimera	gi|283855845|gb|GQ290303.1|	95.59	68	3	0	9781	9848	4222	4289	7e-26	110
+chimera	NM_001009242	92.308	1014	78	0	8881	9894	34	1047	0.0	1441
+chimera	GQ290312	91.527	956	81	0	8881	9836	4	959	0.0	1317
+chimera	AB062417	87.586	1015	124	2	8881	9894	34	1047	0.0	1175
+chimera	GQ290303	91.515	330	28	0	8881	9210	4	333	8.28e-130	455
+chimera	GQ290303	91.358	243	19	2	9542	9783	3127	3368	1.46e-92	331
+chimera	GQ290303	94.220	173	10	0	9208	9380	1410	1582	1.50e-72	265
+chimera	GQ290303	92.941	170	12	0	9375	9544	2854	3023	1.51e-67	248
+chimera	GQ290303	95.588	68	3	0	9781	9848	4222	4289	7.43e-26	110
--- a/test-data/blastn_chimera_vs_three_human_and_rhodopsin_db.tabular	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/blastn_chimera_vs_three_human_and_rhodopsin_db.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -1,11 +1,11 @@
-chimera	ENA|AB011145|AB011145.1	100.00	4560	0	0	1	4560	121	4680	0.0	8421
-chimera	ENA|M10051|M10051.1	99.93	4331	3	0	4560	8890	60	4390	0.0	7982
-chimera	ENA|BC112106|BC112106.1	100.00	1093	0	0	8881	9973	121	1213	0.0	2019
-chimera	gi|57163782|ref|NM_001009242.1|	92.31	1014	78	0	8881	9894	34	1047	0.0	1441
-chimera	gi|283855822|gb|GQ290312.1|	91.53	956	81	0	8881	9836	4	959	0.0	1317
-chimera	gi|18148870|dbj|AB062417.1|	87.65	1012	123	2	8884	9894	37	1047	0.0	1175
-chimera	gi|283855845|gb|GQ290303.1|	91.52	330	28	0	8881	9210	4	333	2e-129	455
-chimera	gi|283855845|gb|GQ290303.1|	91.36	243	19	2	9542	9783	3127	3368	3e-92	331
-chimera	gi|283855845|gb|GQ290303.1|	94.22	173	10	0	9208	9380	1410	1582	3e-72	265
-chimera	gi|283855845|gb|GQ290303.1|	92.94	170	12	0	9375	9544	2854	3023	3e-67	248
-chimera	gi|283855845|gb|GQ290303.1|	95.59	68	3	0	9781	9848	4222	4289	2e-25	110
+chimera	ENA|AB011145|AB011145.1	100.000	4560	0	0	1	4560	121	4680	0.0	8421
+chimera	ENA|M10051|M10051.1	99.931	4331	3	0	4560	8890	60	4390	0.0	7982
+chimera	ENA|BC112106|BC112106.1	100.000	1093	0	0	8881	9973	121	1213	0.0	2019
+chimera	NM_001009242	92.308	1014	78	0	8881	9894	34	1047	0.0	1441
+chimera	GQ290312	91.527	956	81	0	8881	9836	4	959	0.0	1317
+chimera	AB062417	87.586	1015	124	2	8881	9894	34	1047	0.0	1175
+chimera	GQ290303	91.515	330	28	0	8881	9210	4	333	1.70e-129	455
+chimera	GQ290303	91.358	243	19	2	9542	9783	3127	3368	2.98e-92	331
+chimera	GQ290303	94.220	173	10	0	9208	9380	1410	1582	3.07e-72	265
+chimera	GQ290303	92.941	170	12	0	9375	9544	2854	3023	3.09e-67	248
+chimera	GQ290303	95.588	68	3	0	9781	9848	4222	4289	1.52e-25	110
--- a/test-data/blastn_chimera_vs_three_human_db.tabular	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/blastn_chimera_vs_three_human_db.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -1,3 +1,3 @@
-chimera	ENA|AB011145|AB011145.1	100.00	4560	0	0	1	4560	121	4680	0.0	8421
-chimera	ENA|M10051|M10051.1	99.93	4331	3	0	4560	8890	60	4390	0.0	7982
-chimera	ENA|BC112106|BC112106.1	100.00	1093	0	0	8881	9973	121	1213	0.0	2019
+chimera	ENA|AB011145|AB011145.1	100.000	4560	0	0	1	4560	121	4680	0.0	8421
+chimera	ENA|M10051|M10051.1	99.931	4331	3	0	4560	8890	60	4390	0.0	7982
+chimera	ENA|BC112106|BC112106.1	100.000	1093	0	0	8881	9973	121	1213	0.0	2019
--- a/test-data/blastn_chimera_vs_three_human_max1.tabular	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/blastn_chimera_vs_three_human_max1.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -1,1 +1,1 @@
-chimera	ENA|AB011145|AB011145.1	100.00	4560	0	0	1	4560	121	4680	0.0	8421
+chimera	ENA|AB011145|AB011145.1	100.000	4560	0	0	1	4560	121	4680	0.0	8421
--- a/test-data/blastn_chimera_vs_three_human_max1.txt	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/blastn_chimera_vs_three_human_max1.txt	Wed Apr 19 05:27:19 2017 -0400
@@ -1,4 +1,4 @@
-BLASTN 2.2.31+
+BLASTN 2.5.0+
 
 
 Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
@@ -346,7 +346,7 @@
 
 
   Database: Just 3 human mRNA sequences
-    Posted date:  Jul 4, 2015  3:35 PM
+    Posted date:  Dec 2, 2016  10:38 AM
   Number of letters in database: 10,732
   Number of sequences in database:  3
 
--- a/test-data/blastn_rhodopsin_vs_three_human.columns.tabular	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/blastn_rhodopsin_vs_three_human.columns.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -1,7 +1,7 @@
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	92.07	1047	1213
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	91.59	4301	1213
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	91.36	4301	1213
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	94.22	4301	1213
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	92.94	4301	1213
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	91.55	983	1213
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	87.50	1047	1213
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	92.073	1047	1213
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	91.592	4301	1213
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	91.358	4301	1213
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	94.220	4301	1213
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	92.941	4301	1213
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	91.554	983	1213
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	87.500	1047	1213
--- a/test-data/blastn_rhodopsin_vs_three_human.tabular	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/blastn_rhodopsin_vs_three_human.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -1,7 +1,7 @@
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	92.07	1047	83	0	1	1047	88	1134	0.0	1474
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	91.59	333	28	0	1	333	118	450	4e-132	460
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	91.36	243	19	2	3127	3368	782	1023	3e-93	331
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	94.22	173	10	0	1410	1582	448	620	3e-73	265
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	92.94	170	12	0	2854	3023	615	784	3e-68	248
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	91.55	959	81	0	1	959	118	1076	0.0	1323
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	87.50	1048	129	2	1	1047	88	1134	0.0	1208
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	92.073	1047	83	0	1	1047	88	1134	0.0	1474
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	91.592	333	28	0	1	333	118	450	8.03e-132	460
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	91.358	243	19	2	3127	3368	782	1023	6.57e-93	331
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	94.220	173	10	0	1410	1582	448	620	6.76e-73	265
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	92.941	170	12	0	2854	3023	615	784	6.81e-68	248
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	91.554	959	81	0	1	959	118	1076	0.0	1323
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	87.500	1048	129	2	1	1047	88	1134	0.0	1208
--- a/test-data/blastn_rhodopsin_vs_three_human.xml	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/blastn_rhodopsin_vs_three_human.xml	Wed Apr 19 05:27:19 2017 -0400
@@ -2,7 +2,7 @@
 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
 <BlastOutput>
   <BlastOutput_program>blastn</BlastOutput_program>
-  <BlastOutput_version>BLASTN 2.2.31+</BlastOutput_version>
+  <BlastOutput_version>BLASTN 2.5.0+</BlastOutput_version>
   <BlastOutput_reference>Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), &quot;A greedy algorithm for aligning DNA sequences&quot;, J Comput Biol 2000; 7(1-2):203-14.</BlastOutput_reference>
   <BlastOutput_db></BlastOutput_db>
   <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
@@ -25,49 +25,9 @@
   <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
   <Iteration_query-len>1047</Iteration_query-len>
 <Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>15</Statistics_hsp-len>
-      <Statistics_eff-space>4933992</Statistics_eff-space>
-      <Statistics_kappa>0.46</Statistics_kappa>
-      <Statistics_lambda>1.28</Statistics_lambda>
-      <Statistics_entropy>0.85</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>2</Iteration_iter-num>
-  <Iteration_query-ID>Query_1</Iteration_query-ID>
-  <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
-  <Iteration_query-len>1047</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>15</Statistics_hsp-len>
-      <Statistics_eff-space>4933992</Statistics_eff-space>
-      <Statistics_kappa>0.46</Statistics_kappa>
-      <Statistics_lambda>1.28</Statistics_lambda>
-      <Statistics_entropy>0.85</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>3</Iteration_iter-num>
-  <Iteration_query-ID>Query_1</Iteration_query-ID>
-  <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
-  <Iteration_query-len>1047</Iteration_query-len>
-<Iteration_hits>
 <Hit>
   <Hit_num>1</Hit_num>
-  <Hit_id>Subject_3</Hit_id>
+  <Hit_id>ENA|BC112106|BC112106.1</Hit_id>
   <Hit_def>ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds</Hit_def>
   <Hit_accession>Subject_3</Hit_accession>
   <Hit_len>1213</Hit_len>
@@ -98,8 +58,8 @@
     <Statistics>
       <Statistics_db-num>0</Statistics_db-num>
       <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>15</Statistics_hsp-len>
-      <Statistics_eff-space>4933992</Statistics_eff-space>
+      <Statistics_hsp-len>16</Statistics_hsp-len>
+      <Statistics_eff-space>11015204</Statistics_eff-space>
       <Statistics_kappa>0.46</Statistics_kappa>
       <Statistics_lambda>1.28</Statistics_lambda>
       <Statistics_entropy>0.85</Statistics_entropy>
@@ -107,47 +67,7 @@
   </Iteration_stat>
 </Iteration>
 <Iteration>
-  <Iteration_iter-num>4</Iteration_iter-num>
-  <Iteration_query-ID>Query_2</Iteration_query-ID>
-  <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
-  <Iteration_query-len>1574</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>15</Statistics_hsp-len>
-      <Statistics_eff-space>7453579</Statistics_eff-space>
-      <Statistics_kappa>0.46</Statistics_kappa>
-      <Statistics_lambda>1.28</Statistics_lambda>
-      <Statistics_entropy>0.85</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>5</Iteration_iter-num>
-  <Iteration_query-ID>Query_2</Iteration_query-ID>
-  <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
-  <Iteration_query-len>1574</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>15</Statistics_hsp-len>
-      <Statistics_eff-space>7453579</Statistics_eff-space>
-      <Statistics_kappa>0.46</Statistics_kappa>
-      <Statistics_lambda>1.28</Statistics_lambda>
-      <Statistics_entropy>0.85</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>6</Iteration_iter-num>
+  <Iteration_iter-num>2</Iteration_iter-num>
   <Iteration_query-ID>Query_2</Iteration_query-ID>
   <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
   <Iteration_query-len>1574</Iteration_query-len>
@@ -157,28 +77,8 @@
     <Statistics>
       <Statistics_db-num>0</Statistics_db-num>
       <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>15</Statistics_hsp-len>
-      <Statistics_eff-space>7453579</Statistics_eff-space>
-      <Statistics_kappa>0.46</Statistics_kappa>
-      <Statistics_lambda>1.28</Statistics_lambda>
-      <Statistics_entropy>0.85</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>7</Iteration_iter-num>
-  <Iteration_query-ID>Query_3</Iteration_query-ID>
-  <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
-  <Iteration_query-len>4301</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
       <Statistics_hsp-len>16</Statistics_hsp-len>
-      <Statistics_eff-space>20482300</Statistics_eff-space>
+      <Statistics_eff-space>16645672</Statistics_eff-space>
       <Statistics_kappa>0.46</Statistics_kappa>
       <Statistics_lambda>1.28</Statistics_lambda>
       <Statistics_entropy>0.85</Statistics_entropy>
@@ -187,34 +87,14 @@
   <Iteration_message>No hits found</Iteration_message>
 </Iteration>
 <Iteration>
-  <Iteration_iter-num>8</Iteration_iter-num>
-  <Iteration_query-ID>Query_3</Iteration_query-ID>
-  <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
-  <Iteration_query-len>4301</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>16</Statistics_hsp-len>
-      <Statistics_eff-space>20482300</Statistics_eff-space>
-      <Statistics_kappa>0.46</Statistics_kappa>
-      <Statistics_lambda>1.28</Statistics_lambda>
-      <Statistics_entropy>0.85</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>9</Iteration_iter-num>
+  <Iteration_iter-num>3</Iteration_iter-num>
   <Iteration_query-ID>Query_3</Iteration_query-ID>
   <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
   <Iteration_query-len>4301</Iteration_query-len>
 <Iteration_hits>
 <Hit>
   <Hit_num>1</Hit_num>
-  <Hit_id>Subject_3</Hit_id>
+  <Hit_id>ENA|BC112106|BC112106.1</Hit_id>
   <Hit_def>ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds</Hit_def>
   <Hit_accession>Subject_3</Hit_accession>
   <Hit_len>1213</Hit_len>
@@ -223,7 +103,7 @@
       <Hsp_num>1</Hsp_num>
       <Hsp_bit-score>460.936</Hsp_bit-score>
       <Hsp_score>249</Hsp_score>
-      <Hsp_evalue>3.59583e-132</Hsp_evalue>
+      <Hsp_evalue>8.03308e-132</Hsp_evalue>
       <Hsp_query-from>1</Hsp_query-from>
       <Hsp_query-to>333</Hsp_query-to>
       <Hsp_hit-from>118</Hsp_hit-from>
@@ -242,7 +122,7 @@
       <Hsp_num>2</Hsp_num>
       <Hsp_bit-score>331.671</Hsp_bit-score>
       <Hsp_score>179</Hsp_score>
-      <Hsp_evalue>2.94161e-93</Hsp_evalue>
+      <Hsp_evalue>6.57155e-93</Hsp_evalue>
       <Hsp_query-from>3127</Hsp_query-from>
       <Hsp_query-to>3368</Hsp_query-to>
       <Hsp_hit-from>782</Hsp_hit-from>
@@ -261,7 +141,7 @@
       <Hsp_num>3</Hsp_num>
       <Hsp_bit-score>265.191</Hsp_bit-score>
       <Hsp_score>143</Hsp_score>
-      <Hsp_evalue>3.02604e-73</Hsp_evalue>
+      <Hsp_evalue>6.76016e-73</Hsp_evalue>
       <Hsp_query-from>1410</Hsp_query-from>
       <Hsp_query-to>1582</Hsp_query-to>
       <Hsp_hit-from>448</Hsp_hit-from>
@@ -280,7 +160,7 @@
       <Hsp_num>4</Hsp_num>
       <Hsp_bit-score>248.571</Hsp_bit-score>
       <Hsp_score>134</Hsp_score>
-      <Hsp_evalue>3.04752e-68</Hsp_evalue>
+      <Hsp_evalue>6.80816e-68</Hsp_evalue>
       <Hsp_query-from>2854</Hsp_query-from>
       <Hsp_query-to>3023</Hsp_query-to>
       <Hsp_hit-from>615</Hsp_hit-from>
@@ -302,8 +182,8 @@
     <Statistics>
       <Statistics_db-num>0</Statistics_db-num>
       <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>16</Statistics_hsp-len>
-      <Statistics_eff-space>20482300</Statistics_eff-space>
+      <Statistics_hsp-len>17</Statistics_hsp-len>
+      <Statistics_eff-space>45757404</Statistics_eff-space>
       <Statistics_kappa>0.46</Statistics_kappa>
       <Statistics_lambda>1.28</Statistics_lambda>
       <Statistics_entropy>0.85</Statistics_entropy>
@@ -311,54 +191,14 @@
   </Iteration_stat>
 </Iteration>
 <Iteration>
-  <Iteration_iter-num>10</Iteration_iter-num>
-  <Iteration_query-ID>Query_4</Iteration_query-ID>
-  <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def>
-  <Iteration_query-len>983</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>15</Statistics_hsp-len>
-      <Statistics_eff-space>4628008</Statistics_eff-space>
-      <Statistics_kappa>0.46</Statistics_kappa>
-      <Statistics_lambda>1.28</Statistics_lambda>
-      <Statistics_entropy>0.85</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>11</Iteration_iter-num>
-  <Iteration_query-ID>Query_4</Iteration_query-ID>
-  <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def>
-  <Iteration_query-len>983</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>15</Statistics_hsp-len>
-      <Statistics_eff-space>4628008</Statistics_eff-space>
-      <Statistics_kappa>0.46</Statistics_kappa>
-      <Statistics_lambda>1.28</Statistics_lambda>
-      <Statistics_entropy>0.85</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>12</Iteration_iter-num>
+  <Iteration_iter-num>4</Iteration_iter-num>
   <Iteration_query-ID>Query_4</Iteration_query-ID>
   <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def>
   <Iteration_query-len>983</Iteration_query-len>
 <Iteration_hits>
 <Hit>
   <Hit_num>1</Hit_num>
-  <Hit_id>Subject_3</Hit_id>
+  <Hit_id>ENA|BC112106|BC112106.1</Hit_id>
   <Hit_def>ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds</Hit_def>
   <Hit_accession>Subject_3</Hit_accession>
   <Hit_len>1213</Hit_len>
@@ -389,8 +229,8 @@
     <Statistics>
       <Statistics_db-num>0</Statistics_db-num>
       <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>15</Statistics_hsp-len>
-      <Statistics_eff-space>4628008</Statistics_eff-space>
+      <Statistics_hsp-len>16</Statistics_hsp-len>
+      <Statistics_eff-space>10331428</Statistics_eff-space>
       <Statistics_kappa>0.46</Statistics_kappa>
       <Statistics_lambda>1.28</Statistics_lambda>
       <Statistics_entropy>0.85</Statistics_entropy>
@@ -398,54 +238,14 @@
   </Iteration_stat>
 </Iteration>
 <Iteration>
-  <Iteration_iter-num>13</Iteration_iter-num>
-  <Iteration_query-ID>Query_5</Iteration_query-ID>
-  <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def>
-  <Iteration_query-len>1047</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>15</Statistics_hsp-len>
-      <Statistics_eff-space>4933992</Statistics_eff-space>
-      <Statistics_kappa>0.46</Statistics_kappa>
-      <Statistics_lambda>1.28</Statistics_lambda>
-      <Statistics_entropy>0.85</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>14</Iteration_iter-num>
-  <Iteration_query-ID>Query_5</Iteration_query-ID>
-  <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def>
-  <Iteration_query-len>1047</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>15</Statistics_hsp-len>
-      <Statistics_eff-space>4933992</Statistics_eff-space>
-      <Statistics_kappa>0.46</Statistics_kappa>
-      <Statistics_lambda>1.28</Statistics_lambda>
-      <Statistics_entropy>0.85</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>15</Iteration_iter-num>
+  <Iteration_iter-num>5</Iteration_iter-num>
   <Iteration_query-ID>Query_5</Iteration_query-ID>
   <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def>
   <Iteration_query-len>1047</Iteration_query-len>
 <Iteration_hits>
 <Hit>
   <Hit_num>1</Hit_num>
-  <Hit_id>Subject_3</Hit_id>
+  <Hit_id>ENA|BC112106|BC112106.1</Hit_id>
   <Hit_def>ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds</Hit_def>
   <Hit_accession>Subject_3</Hit_accession>
   <Hit_len>1213</Hit_len>
@@ -476,8 +276,8 @@
     <Statistics>
       <Statistics_db-num>0</Statistics_db-num>
       <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>15</Statistics_hsp-len>
-      <Statistics_eff-space>4933992</Statistics_eff-space>
+      <Statistics_hsp-len>16</Statistics_hsp-len>
+      <Statistics_eff-space>11015204</Statistics_eff-space>
       <Statistics_kappa>0.46</Statistics_kappa>
       <Statistics_lambda>1.28</Statistics_lambda>
       <Statistics_entropy>0.85</Statistics_entropy>
@@ -485,7 +285,7 @@
   </Iteration_stat>
 </Iteration>
 <Iteration>
-  <Iteration_iter-num>16</Iteration_iter-num>
+  <Iteration_iter-num>6</Iteration_iter-num>
   <Iteration_query-ID>Query_6</Iteration_query-ID>
   <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def>
   <Iteration_query-len>1344</Iteration_query-len>
@@ -495,48 +295,8 @@
     <Statistics>
       <Statistics_db-num>0</Statistics_db-num>
       <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>15</Statistics_hsp-len>
-      <Statistics_eff-space>6353949</Statistics_eff-space>
-      <Statistics_kappa>0.46</Statistics_kappa>
-      <Statistics_lambda>1.28</Statistics_lambda>
-      <Statistics_entropy>0.85</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>17</Iteration_iter-num>
-  <Iteration_query-ID>Query_6</Iteration_query-ID>
-  <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def>
-  <Iteration_query-len>1344</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>15</Statistics_hsp-len>
-      <Statistics_eff-space>6353949</Statistics_eff-space>
-      <Statistics_kappa>0.46</Statistics_kappa>
-      <Statistics_lambda>1.28</Statistics_lambda>
-      <Statistics_entropy>0.85</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>18</Iteration_iter-num>
-  <Iteration_query-ID>Query_6</Iteration_query-ID>
-  <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def>
-  <Iteration_query-len>1344</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>15</Statistics_hsp-len>
-      <Statistics_eff-space>6353949</Statistics_eff-space>
+      <Statistics_hsp-len>16</Statistics_hsp-len>
+      <Statistics_eff-space>14188352</Statistics_eff-space>
       <Statistics_kappa>0.46</Statistics_kappa>
       <Statistics_lambda>1.28</Statistics_lambda>
       <Statistics_entropy>0.85</Statistics_entropy>
--- a/test-data/blastn_rhodopsin_vs_three_human_converted.tabular	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/blastn_rhodopsin_vs_three_human_converted.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -1,7 +1,7 @@
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	92.07	1047	83	0	1	1047	88	1134	0.0	1474
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	91.59	333	28	0	1	333	118	450	4e-132	460
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	91.36	243	19	2	3127	3368	782	1023	3e-93	331
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	94.22	173	10	0	1410	1582	448	620	3e-73	265
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	92.94	170	12	0	2854	3023	615	784	3e-68	248
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	91.55	959	81	0	1	959	118	1076	0.0	1323
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	87.50	1048	129	2	1	1047	88	1134	0.0	1208
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	92.073	1047	83	0	1	1047	88	1134	0.0	1474
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	91.592	333	28	0	1	333	118	450	8e-132	460
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	91.358	243	19	2	3127	3368	782	1023	7e-93	331
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	94.220	173	10	0	1410	1582	448	620	7e-73	265
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	92.941	170	12	0	2854	3023	615	784	7e-68	248
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	91.554	959	81	0	1	959	118	1076	0.0	1323
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	87.500	1048	129	2	1	1047	88	1134	0.0	1208
--- a/test-data/blastp_four_human_vs_rhodopsin.tabular	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/blastp_four_human_vs_rhodopsin.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -1,6 +1,6 @@
-sp|P08100|OPSD_HUMAN	gi|57163783|ref|NP_001009242.1|	96.55	348	12	0	1	348	1	348	0.0	701
-sp|P08100|OPSD_HUMAN	gi|3024260|sp|P56514.1|OPSD_BUFBU	84.80	342	51	1	1	341	1	342	0.0	619
-sp|P08100|OPSD_HUMAN	gi|283855846|gb|ADB45242.1|	94.82	328	17	0	11	338	1	328	0.0	653
-sp|P08100|OPSD_HUMAN	gi|283855823|gb|ADB45229.1|	94.82	328	17	0	11	338	1	328	0.0	631
-sp|P08100|OPSD_HUMAN	gi|223523|prf||0811197A	93.10	348	23	1	1	348	1	347	0.0	673
-sp|P08100|OPSD_HUMAN	gi|12583665|dbj|BAB21486.1|	82.16	342	60	1	1	341	1	342	0.0	599
+P08100	NP_001009242	96.552	348	12	0	1	348	1	348	0.0	701
+P08100	0811197A	93.103	348	23	1	1	348	1	347	0.0	673
+P08100	ADB45242	94.817	328	17	0	11	338	1	328	0.0	653
+P08100	ADB45229	94.817	328	17	0	11	338	1	328	0.0	631
+P08100	P56514	84.795	342	51	1	1	341	1	342	0.0	619
+P08100	BAB21486	82.164	342	60	1	1	341	1	342	0.0	599
--- a/test-data/blastp_four_human_vs_rhodopsin.xml	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/blastp_four_human_vs_rhodopsin.xml	Wed Apr 19 05:27:19 2017 -0400
@@ -2,10 +2,10 @@
 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
 <BlastOutput>
   <BlastOutput_program>blastp</BlastOutput_program>
-  <BlastOutput_version>BLASTP 2.2.31+</BlastOutput_version>
+  <BlastOutput_version>BLASTP 2.5.0+</BlastOutput_version>
   <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
   <BlastOutput_db></BlastOutput_db>
-  <BlastOutput_query-ID>sp|Q9BS26|ERP44_HUMAN</BlastOutput_query-ID>
+  <BlastOutput_query-ID>Q9BS26</BlastOutput_query-ID>
   <BlastOutput_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</BlastOutput_query-def>
   <BlastOutput_query-len>406</BlastOutput_query-len>
   <BlastOutput_param>
@@ -20,7 +20,7 @@
 <BlastOutput_iterations>
 <Iteration>
   <Iteration_iter-num>1</Iteration_iter-num>
-  <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID>
+  <Iteration_query-ID>Q9BS26</Iteration_query-ID>
   <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
   <Iteration_query-len>406</Iteration_query-len>
 <Iteration_hits>
@@ -29,8 +29,8 @@
     <Statistics>
       <Statistics_db-num>0</Statistics_db-num>
       <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>30</Statistics_hsp-len>
-      <Statistics_eff-space>119568</Statistics_eff-space>
+      <Statistics_hsp-len>42</Statistics_hsp-len>
+      <Statistics_eff-space>657748</Statistics_eff-space>
       <Statistics_kappa>0.041</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
@@ -40,17 +40,17 @@
 </Iteration>
 <Iteration>
   <Iteration_iter-num>2</Iteration_iter-num>
-  <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID>
-  <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
-  <Iteration_query-len>406</Iteration_query-len>
+  <Iteration_query-ID>Q9NSY1</Iteration_query-ID>
+  <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def>
+  <Iteration_query-len>1161</Iteration_query-len>
 <Iteration_hits>
 </Iteration_hits>
   <Iteration_stat>
     <Statistics>
       <Statistics_db-num>0</Statistics_db-num>
       <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>30</Statistics_hsp-len>
-      <Statistics_eff-space>119568</Statistics_eff-space>
+      <Statistics_hsp-len>50</Statistics_hsp-len>
+      <Statistics_eff-space>1954249</Statistics_eff-space>
       <Statistics_kappa>0.041</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
@@ -60,17 +60,17 @@
 </Iteration>
 <Iteration>
   <Iteration_iter-num>3</Iteration_iter-num>
-  <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID>
-  <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
-  <Iteration_query-len>406</Iteration_query-len>
+  <Iteration_query-ID>P06213</Iteration_query-ID>
+  <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def>
+  <Iteration_query-len>1382</Iteration_query-len>
 <Iteration_hits>
 </Iteration_hits>
   <Iteration_stat>
     <Statistics>
       <Statistics_db-num>0</Statistics_db-num>
       <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>30</Statistics_hsp-len>
-      <Statistics_eff-space>119568</Statistics_eff-space>
+      <Statistics_hsp-len>51</Statistics_hsp-len>
+      <Statistics_eff-space>2333243</Statistics_eff-space>
       <Statistics_kappa>0.041</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
@@ -80,307 +80,7 @@
 </Iteration>
 <Iteration>
   <Iteration_iter-num>4</Iteration_iter-num>
-  <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID>
-  <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
-  <Iteration_query-len>406</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>30</Statistics_hsp-len>
-      <Statistics_eff-space>119568</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>5</Iteration_iter-num>
-  <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID>
-  <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
-  <Iteration_query-len>406</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>30</Statistics_hsp-len>
-      <Statistics_eff-space>119568</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>6</Iteration_iter-num>
-  <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID>
-  <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
-  <Iteration_query-len>406</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>30</Statistics_hsp-len>
-      <Statistics_eff-space>119568</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>7</Iteration_iter-num>
-  <Iteration_query-ID>sp|Q9NSY1|BMP2K_HUMAN</Iteration_query-ID>
-  <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def>
-  <Iteration_query-len>1161</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>38</Statistics_hsp-len>
-      <Statistics_eff-space>348130</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>8</Iteration_iter-num>
-  <Iteration_query-ID>sp|Q9NSY1|BMP2K_HUMAN</Iteration_query-ID>
-  <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def>
-  <Iteration_query-len>1161</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>38</Statistics_hsp-len>
-      <Statistics_eff-space>348130</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>9</Iteration_iter-num>
-  <Iteration_query-ID>sp|Q9NSY1|BMP2K_HUMAN</Iteration_query-ID>
-  <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def>
-  <Iteration_query-len>1161</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>38</Statistics_hsp-len>
-      <Statistics_eff-space>348130</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>10</Iteration_iter-num>
-  <Iteration_query-ID>sp|Q9NSY1|BMP2K_HUMAN</Iteration_query-ID>
-  <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def>
-  <Iteration_query-len>1161</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>38</Statistics_hsp-len>
-      <Statistics_eff-space>348130</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>11</Iteration_iter-num>
-  <Iteration_query-ID>sp|Q9NSY1|BMP2K_HUMAN</Iteration_query-ID>
-  <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def>
-  <Iteration_query-len>1161</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>38</Statistics_hsp-len>
-      <Statistics_eff-space>348130</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>12</Iteration_iter-num>
-  <Iteration_query-ID>sp|Q9NSY1|BMP2K_HUMAN</Iteration_query-ID>
-  <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def>
-  <Iteration_query-len>1161</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>38</Statistics_hsp-len>
-      <Statistics_eff-space>348130</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>13</Iteration_iter-num>
-  <Iteration_query-ID>sp|P06213|INSR_HUMAN</Iteration_query-ID>
-  <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def>
-  <Iteration_query-len>1382</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>39</Statistics_hsp-len>
-      <Statistics_eff-space>414987</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>14</Iteration_iter-num>
-  <Iteration_query-ID>sp|P06213|INSR_HUMAN</Iteration_query-ID>
-  <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def>
-  <Iteration_query-len>1382</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>39</Statistics_hsp-len>
-      <Statistics_eff-space>414987</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>15</Iteration_iter-num>
-  <Iteration_query-ID>sp|P06213|INSR_HUMAN</Iteration_query-ID>
-  <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def>
-  <Iteration_query-len>1382</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>39</Statistics_hsp-len>
-      <Statistics_eff-space>414987</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>16</Iteration_iter-num>
-  <Iteration_query-ID>sp|P06213|INSR_HUMAN</Iteration_query-ID>
-  <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def>
-  <Iteration_query-len>1382</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>39</Statistics_hsp-len>
-      <Statistics_eff-space>414987</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>17</Iteration_iter-num>
-  <Iteration_query-ID>sp|P06213|INSR_HUMAN</Iteration_query-ID>
-  <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def>
-  <Iteration_query-len>1382</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>39</Statistics_hsp-len>
-      <Statistics_eff-space>414987</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>18</Iteration_iter-num>
-  <Iteration_query-ID>sp|P06213|INSR_HUMAN</Iteration_query-ID>
-  <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def>
-  <Iteration_query-len>1382</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>39</Statistics_hsp-len>
-      <Statistics_eff-space>414987</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>19</Iteration_iter-num>
-  <Iteration_query-ID>sp|P08100|OPSD_HUMAN</Iteration_query-ID>
+  <Iteration_query-ID>P08100</Iteration_query-ID>
   <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def>
   <Iteration_query-len>348</Iteration_query-len>
 <Iteration_hits>
@@ -412,74 +112,36 @@
     </Hsp>
   </Hit_hsps>
 </Hit>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>29</Statistics_hsp-len>
-      <Statistics_eff-space>101761</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>20</Iteration_iter-num>
-  <Iteration_query-ID>sp|P08100|OPSD_HUMAN</Iteration_query-ID>
-  <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def>
-  <Iteration_query-len>348</Iteration_query-len>
-<Iteration_hits>
 <Hit>
-  <Hit_num>1</Hit_num>
-  <Hit_id>gi|3024260|sp|P56514.1|OPSD_BUFBU</Hit_id>
-  <Hit_def>RecName: Full=Rhodopsin</Hit_def>
-  <Hit_accession>P56514</Hit_accession>
-  <Hit_len>354</Hit_len>
+  <Hit_num>2</Hit_num>
+  <Hit_id>gi|223523|prf||0811197A</Hit_id>
+  <Hit_def>rhodopsin [Bos taurus]</Hit_def>
+  <Hit_accession>0811197A</Hit_accession>
+  <Hit_len>347</Hit_len>
   <Hit_hsps>
     <Hsp>
       <Hsp_num>1</Hsp_num>
-      <Hsp_bit-score>619.002</Hsp_bit-score>
-      <Hsp_score>1595</Hsp_score>
+      <Hsp_bit-score>673.315</Hsp_bit-score>
+      <Hsp_score>1736</Hsp_score>
       <Hsp_evalue>0</Hsp_evalue>
       <Hsp_query-from>1</Hsp_query-from>
-      <Hsp_query-to>341</Hsp_query-to>
+      <Hsp_query-to>348</Hsp_query-to>
       <Hsp_hit-from>1</Hsp_hit-from>
-      <Hsp_hit-to>342</Hsp_hit-to>
+      <Hsp_hit-to>347</Hsp_hit-to>
       <Hsp_query-frame>0</Hsp_query-frame>
       <Hsp_hit-frame>0</Hsp_hit-frame>
-      <Hsp_identity>290</Hsp_identity>
-      <Hsp_positive>322</Hsp_positive>
+      <Hsp_identity>324</Hsp_identity>
+      <Hsp_positive>336</Hsp_positive>
       <Hsp_gaps>1</Hsp_gaps>
-      <Hsp_align-len>342</Hsp_align-len>
-      <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE</Hsp_qseq>
-      <Hsp_hseq>MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE</Hsp_hseq>
-      <Hsp_midline>MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S++GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF++QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA  SKTE</Hsp_midline>
+      <Hsp_align-len>348</Hsp_align-len>
+      <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq>
+      <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGID-YTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_hseq>
+      <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGID YT   E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline>
     </Hsp>
   </Hit_hsps>
 </Hit>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>29</Statistics_hsp-len>
-      <Statistics_eff-space>101761</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>21</Iteration_iter-num>
-  <Iteration_query-ID>sp|P08100|OPSD_HUMAN</Iteration_query-ID>
-  <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def>
-  <Iteration_query-len>348</Iteration_query-len>
-<Iteration_hits>
 <Hit>
-  <Hit_num>1</Hit_num>
+  <Hit_num>3</Hit_num>
   <Hit_id>gi|283855846|gb|ADB45242.1|</Hit_id>
   <Hit_def>rhodopsin [Cynopterus brachyotis]</Hit_def>
   <Hit_accession>ADB45242</Hit_accession>
@@ -506,27 +168,8 @@
     </Hsp>
   </Hit_hsps>
 </Hit>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>29</Statistics_hsp-len>
-      <Statistics_eff-space>101761</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>22</Iteration_iter-num>
-  <Iteration_query-ID>sp|P08100|OPSD_HUMAN</Iteration_query-ID>
-  <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def>
-  <Iteration_query-len>348</Iteration_query-len>
-<Iteration_hits>
 <Hit>
-  <Hit_num>1</Hit_num>
+  <Hit_num>4</Hit_num>
   <Hit_id>gi|283855823|gb|ADB45229.1|</Hit_id>
   <Hit_def>rhodopsin [Myotis pilosus]</Hit_def>
   <Hit_accession>ADB45229</Hit_accession>
@@ -553,74 +196,36 @@
     </Hsp>
   </Hit_hsps>
 </Hit>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>29</Statistics_hsp-len>
-      <Statistics_eff-space>101761</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>23</Iteration_iter-num>
-  <Iteration_query-ID>sp|P08100|OPSD_HUMAN</Iteration_query-ID>
-  <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def>
-  <Iteration_query-len>348</Iteration_query-len>
-<Iteration_hits>
 <Hit>
-  <Hit_num>1</Hit_num>
-  <Hit_id>gi|223523|prf||0811197A</Hit_id>
-  <Hit_def>rhodopsin [Bos taurus]</Hit_def>
-  <Hit_accession>0811197A</Hit_accession>
-  <Hit_len>347</Hit_len>
+  <Hit_num>5</Hit_num>
+  <Hit_id>gi|3024260|sp|P56514.1|OPSD_BUFBU</Hit_id>
+  <Hit_def>RecName: Full=Rhodopsin</Hit_def>
+  <Hit_accession>P56514</Hit_accession>
+  <Hit_len>354</Hit_len>
   <Hit_hsps>
     <Hsp>
       <Hsp_num>1</Hsp_num>
-      <Hsp_bit-score>673.315</Hsp_bit-score>
-      <Hsp_score>1736</Hsp_score>
+      <Hsp_bit-score>619.002</Hsp_bit-score>
+      <Hsp_score>1595</Hsp_score>
       <Hsp_evalue>0</Hsp_evalue>
       <Hsp_query-from>1</Hsp_query-from>
-      <Hsp_query-to>348</Hsp_query-to>
+      <Hsp_query-to>341</Hsp_query-to>
       <Hsp_hit-from>1</Hsp_hit-from>
-      <Hsp_hit-to>347</Hsp_hit-to>
+      <Hsp_hit-to>342</Hsp_hit-to>
       <Hsp_query-frame>0</Hsp_query-frame>
       <Hsp_hit-frame>0</Hsp_hit-frame>
-      <Hsp_identity>324</Hsp_identity>
-      <Hsp_positive>336</Hsp_positive>
+      <Hsp_identity>290</Hsp_identity>
+      <Hsp_positive>322</Hsp_positive>
       <Hsp_gaps>1</Hsp_gaps>
-      <Hsp_align-len>348</Hsp_align-len>
-      <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq>
-      <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGID-YTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_hseq>
-      <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGID YT   E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline>
+      <Hsp_align-len>342</Hsp_align-len>
+      <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE</Hsp_qseq>
+      <Hsp_hseq>MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE</Hsp_hseq>
+      <Hsp_midline>MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S++GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF++QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA  SKTE</Hsp_midline>
     </Hsp>
   </Hit_hsps>
 </Hit>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>29</Statistics_hsp-len>
-      <Statistics_eff-space>101761</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>24</Iteration_iter-num>
-  <Iteration_query-ID>sp|P08100|OPSD_HUMAN</Iteration_query-ID>
-  <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def>
-  <Iteration_query-len>348</Iteration_query-len>
-<Iteration_hits>
 <Hit>
-  <Hit_num>1</Hit_num>
+  <Hit_num>6</Hit_num>
   <Hit_id>gi|12583665|dbj|BAB21486.1|</Hit_id>
   <Hit_def>fresh water form rod opsin [Conger myriaster]</Hit_def>
   <Hit_accession>BAB21486</Hit_accession>
@@ -652,8 +257,8 @@
     <Statistics>
       <Statistics_db-num>0</Statistics_db-num>
       <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>29</Statistics_hsp-len>
-      <Statistics_eff-space>101761</Statistics_eff-space>
+      <Statistics_hsp-len>41</Statistics_hsp-len>
+      <Statistics_eff-space>556591</Statistics_eff-space>
       <Statistics_kappa>0.041</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
--- a/test-data/blastp_four_human_vs_rhodopsin_converted.tabular	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/blastp_four_human_vs_rhodopsin_converted.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -1,6 +1,6 @@
-sp|P08100|OPSD_HUMAN	gi|57163783|ref|NP_001009242.1|	96.55	348	12	0	1	348	1	348	0.0	701
-sp|P08100|OPSD_HUMAN	gi|3024260|sp|P56514.1|OPSD_BUFBU	84.80	342	51	1	1	341	1	342	0.0	619
-sp|P08100|OPSD_HUMAN	gi|283855846|gb|ADB45242.1|	94.82	328	17	0	11	338	1	328	0.0	653
-sp|P08100|OPSD_HUMAN	gi|283855823|gb|ADB45229.1|	94.82	328	17	0	11	338	1	328	0.0	631
-sp|P08100|OPSD_HUMAN	gi|223523|prf||0811197A	93.10	348	23	1	1	348	1	347	0.0	673
-sp|P08100|OPSD_HUMAN	gi|12583665|dbj|BAB21486.1|	82.16	342	60	1	1	341	1	342	0.0	599
+P08100	gi|57163783|ref|NP_001009242.1|	96.552	348	12	0	1	348	1	348	0.0	701
+P08100	gi|223523|prf||0811197A	93.103	348	23	1	1	348	1	347	0.0	673
+P08100	gi|283855846|gb|ADB45242.1|	94.817	328	17	0	11	338	1	328	0.0	653
+P08100	gi|283855823|gb|ADB45229.1|	94.817	328	17	0	11	338	1	328	0.0	631
+P08100	gi|3024260|sp|P56514.1|OPSD_BUFBU	84.795	342	51	1	1	341	1	342	0.0	619
+P08100	gi|12583665|dbj|BAB21486.1|	82.164	342	60	1	1	341	1	342	0.0	599
--- a/test-data/blastp_four_human_vs_rhodopsin_converted_ext.tabular	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/blastp_four_human_vs_rhodopsin_converted_ext.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -1,6 +1,6 @@
-sp|P08100|OPSD_HUMAN	gi|57163783|ref|NP_001009242.1|	96.55	348	12	0	1	348	1	348	0.0	701	gi|57163783|ref|NP_001009242.1|	1808	336	343	0	98.56	1	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA	348	348	rhodopsin [Felis catus]
-sp|P08100|OPSD_HUMAN	gi|3024260|sp|P56514.1|OPSD_BUFBU	84.80	342	51	1	1	341	1	342	0.0	619	gi|3024260|sp|P56514.1|OPSD_BUFBU	1595	290	322	1	94.15	1	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE	MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE	348	354	RecName: Full=Rhodopsin
-sp|P08100|OPSD_HUMAN	gi|283855846|gb|ADB45242.1|	94.82	328	17	0	11	338	1	328	0.0	653	gi|283855846|gb|ADB45242.1|	1684	311	321	0	97.87	1	1	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS	VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS	348	328	rhodopsin [Cynopterus brachyotis]
-sp|P08100|OPSD_HUMAN	gi|283855823|gb|ADB45229.1|	94.82	328	17	0	11	338	1	328	0.0	631	gi|283855823|gb|ADB45229.1|	1627	311	323	0	98.48	1	1	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS	VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS	348	328	rhodopsin [Myotis pilosus]
-sp|P08100|OPSD_HUMAN	gi|223523|prf||0811197A	93.10	348	23	1	1	348	1	347	0.0	673	gi|223523|prf||0811197A	1736	324	336	1	96.55	1	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGID-YTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA	348	347	rhodopsin [Bos taurus]
-sp|P08100|OPSD_HUMAN	gi|12583665|dbj|BAB21486.1|	82.16	342	60	1	1	341	1	342	0.0	599	gi|12583665|dbj|BAB21486.1|	1544	281	314	1	91.81	1	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE	MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE	348	354	fresh water form rod opsin [Conger myriaster]
+P08100	gi|57163783|ref|NP_001009242.1|	96.552	348	12	0	1	348	1	348	0.0	701	gi|57163783|ref|NP_001009242.1|	1808	336	343	0	98.56	1	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA	348	348	rhodopsin [Felis catus]
+P08100	gi|223523|prf||0811197A	93.103	348	23	1	1	348	1	347	0.0	673	gi|223523|prf||0811197A	1736	324	336	1	96.55	1	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGID-YTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA	348	347	rhodopsin [Bos taurus]
+P08100	gi|283855846|gb|ADB45242.1|	94.817	328	17	0	11	338	1	328	0.0	653	gi|283855846|gb|ADB45242.1|	1684	311	321	0	97.87	1	1	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS	VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS	348	328	rhodopsin [Cynopterus brachyotis]
+P08100	gi|283855823|gb|ADB45229.1|	94.817	328	17	0	11	338	1	328	0.0	631	gi|283855823|gb|ADB45229.1|	1627	311	323	0	98.48	1	1	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS	VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS	348	328	rhodopsin [Myotis pilosus]
+P08100	gi|3024260|sp|P56514.1|OPSD_BUFBU	84.795	342	51	1	1	341	1	342	0.0	619	gi|3024260|sp|P56514.1|OPSD_BUFBU	1595	290	322	1	94.15	1	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE	MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE	348	354	RecName: Full=Rhodopsin
+P08100	gi|12583665|dbj|BAB21486.1|	82.164	342	60	1	1	341	1	342	0.0	599	gi|12583665|dbj|BAB21486.1|	1544	281	314	1	91.81	1	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE	MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE	348	354	fresh water form rod opsin [Conger myriaster]
--- a/test-data/blastp_four_human_vs_rhodopsin_ext.tabular	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/blastp_four_human_vs_rhodopsin_ext.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -1,6 +1,6 @@
-sp|P08100|OPSD_HUMAN	gi|57163783|ref|NP_001009242.1|	96.55	348	12	0	1	348	1	348	0.0	701	gi|57163783|ref|NP_001009242.1|	1808	336	343	0	98.56	1	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA	348	348	N/A
-sp|P08100|OPSD_HUMAN	gi|3024260|sp|P56514.1|OPSD_BUFBU	84.80	342	51	1	1	341	1	342	0.0	619	gi|3024260|sp|P56514.1|OPSD_BUFBU	1595	290	322	1	94.15	1	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE	MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE	348	354	N/A
-sp|P08100|OPSD_HUMAN	gi|283855846|gb|ADB45242.1|	94.82	328	17	0	11	338	1	328	0.0	653	gi|283855846|gb|ADB45242.1|	1684	311	321	0	97.87	1	1	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS	VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS	348	328	N/A
-sp|P08100|OPSD_HUMAN	gi|283855823|gb|ADB45229.1|	94.82	328	17	0	11	338	1	328	0.0	631	gi|283855823|gb|ADB45229.1|	1627	311	323	0	98.48	1	1	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS	VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS	348	328	N/A
-sp|P08100|OPSD_HUMAN	gi|223523|prf||0811197A	93.10	348	23	1	1	348	1	347	0.0	673	gi|223523|prf||0811197A	1736	324	336	1	96.55	1	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGID-YTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA	348	347	N/A
-sp|P08100|OPSD_HUMAN	gi|12583665|dbj|BAB21486.1|	82.16	342	60	1	1	341	1	342	0.0	599	gi|12583665|dbj|BAB21486.1|	1544	281	314	1	91.81	1	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE	MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE	348	354	N/A
+P08100	NP_001009242	96.552	348	12	0	1	348	1	348	0.0	701	gi|57163783|ref|NP_001009242.1|	1808	336	343	0	98.56	1	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA	348	348	N/A
+P08100	0811197A	93.103	348	23	1	1	348	1	347	0.0	673	gi|223523|prf||0811197A	1736	324	336	1	96.55	1	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGID-YTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA	348	347	N/A
+P08100	ADB45242	94.817	328	17	0	11	338	1	328	0.0	653	gi|283855846|gb|ADB45242.1|	1684	311	321	0	97.87	1	1	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS	VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS	348	328	N/A
+P08100	ADB45229	94.817	328	17	0	11	338	1	328	0.0	631	gi|283855823|gb|ADB45229.1|	1627	311	323	0	98.48	1	1	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS	VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS	348	328	N/A
+P08100	P56514	84.795	342	51	1	1	341	1	342	0.0	619	gi|3024260|sp|P56514.1|OPSD_BUFBU	1595	290	322	1	94.15	1	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE	MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE	348	354	N/A
+P08100	BAB21486	82.164	342	60	1	1	341	1	342	0.0	599	gi|12583665|dbj|BAB21486.1|	1544	281	314	1	91.81	1	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE	MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE	348	354	N/A
--- a/test-data/blastp_human_vs_pdb_seg_no_converted_ext.tabular	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/blastp_human_vs_pdb_seg_no_converted_ext.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -1,8 +1,8 @@
-sp|Q9BS26|ERP44_HUMAN	gi|193885198|pdb|2R2J|A	97.11	381	11	0	26	406	2	382	0.0	768	gi|193885198|pdb|2R2J|A	1982	370	372	0	97.64	1	1	PVTTEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFGDVSKPERYSGDNIIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHADCDKFRHPLLHIQKTPADCPVIAIDSFRHMYVFGDFKDVLIPGKLKQFVFDLHSGKLHREFHHGPDPTDTAPGEQAQDVASSPPESSFQKLAPSEYRYTLLRDRDEL	PLGSEITSLDTENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFGDVSKPERYSGDNIIYKPPGHSAPDXVYLGAXTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHXKEDTESLEIFQNEVARQLISEKGTINFLHADCDKFRHPLLHIQKTPADCPVIAIDSFRHXYVFGDFKDVLIPGKLKQFVFDLHSGKLHREFHHGPDPTDTAPGEQAQDVASSPPESSFQKLAPSEYRYTLLRDRDEL	406	382	Chain A, Crystal Structure Of Human Erp44
-sp|Q9BS26|ERP44_HUMAN	gi|88192228|pdb|2B5E|A	25.17	290	193	8	25	306	10	283	4e-20	95.1	gi|88192228|pdb|2B5E|A;gi|206581884|pdb|3BOA|A	235	73	133	24	45.86	1	1	TPVTTEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKR-EYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFGDVSKPERYSGDNI---IYKPPGHSAPDMVYLGA---MTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHADCDKF-RH	APEDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK-----NITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVVADLPAYLANETFVTPVIVQSGKIDADFNATFYSMANKHFNDYDFVSA--------ENADDDFKLSIYLPSAMDEP-VVYNGKKADIADADVFEKWLQVEALPYFGEIDGSVFAQYVESGLPLGYLFY--NDEEELEEYKPLFTELAKKNRGLMNFVSIDARKFGRH	406	504	Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase<>Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase.
-sp|Q9NSY1|BMP2K_HUMAN	gi|73536291|pdb|2BUJ|A	29.39	279	182	8	40	308	21	294	1e-22	105	gi|73536291|pdb|2BUJ|A;gi|73536292|pdb|2BUJ|B	262	82	130	15	46.59	1	1	GVRVFAVGRHQVTLEESLAEGGFSTVFLVR-THGGIRCALKRMYVNNMPDLNVCKREITIMKELSGHKNIVGYLDCAVNSISDNVWEVLILMEYCRAGQVVNQMNKKLQTG--FTEPEVLQIFCDTCEAVARLHQCKTPIIHRDLKVENILLNDGGNYVLCDFGSATNKFLNPQKDG-VNVVEEEIKKYTTLSYRAPEMINLYGGKPITTKADIWALGCLLYKLCFFTLPF------GESQVAICDGNFTIPDNSRYSRNIHCLIRFMLEPDPEHRPDI	GHMVIIDNKHYLFIQK-LGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREAD-MHRLFNHPNILRLVAYCLRERGAKH-EAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIH--AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLSIPQSPRHSSALWQLLNSMMTVDPHQRPHI	1161	317	Chain A, Crystal Structure Of The Human Serine-Threonine Kinase 16 In Complex With Staurosporine<>Chain B, Crystal Structure Of The Human Serine-Threonine Kinase 16 In Complex With Staurosporine
-sp|Q9NSY1|BMP2K_HUMAN	gi|270346335|pdb|2WQM|A	27.21	272	166	12	53	311	36	288	6e-17	86.3	gi|270346335|pdb|2WQM|A;gi|270346336|pdb|2WQN|A	212	74	129	32	47.43	1	1	LEESLAEGGFSTVFLVRTH-GGIRCALKRMYVNNMPDLNV---CKREITIMKELSGHKNIVGYLDCAVNSISDNVWEVLILMEYCRAGQVVNQMN--KKLQTGFTEPEVLQIFCDTCEAVARLHQCKTPIIHRDLKVENILLNDGGNYVLCDFGSATNKFLNPQKDGVNVVEEEIKKYTTLSYRAPEMINLYGGKPITTKADIWALGCLLYKLCFFTLPFGESQV---AICD----GNFTIPDNSRYSRNIHCLIRFMLEPDPEHRPDIFQV	IEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLN-HPNVIKYY---ASFIEDN--ELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRR--VMHRDIKPANVFITATGVVKLGDLG--LGRFFSSKTTAAHSL------VGTPYYMSPERIHENG---YNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDVTYV	1161	310	Chain A, Structure Of Apo Human Nek7<>Chain A, Structure Of Adp-Bound Human Nek7
-sp|P06213|INSR_HUMAN	gi|116667097|pdb|2DTG|E	95.91	928	7	2	28	955	1	897	0.0	1846	gi|116667097|pdb|2DTG|E	4781	890	893	31	96.23	1	1	HLYPGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNYIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRKTSSGTGAEDPRPSRKRRSLGDVGNVTVAVPTVAAFPNTSSTSVPTSPEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCVSRKHFALERGCRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSNIA	HLYPGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFV------------PRPSRKRRSLGDVGNA-------------------GNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSNIA	1382	897	Chain E, Insulin Receptor (Ir) Ectodomain In Complex With Fab's
-sp|P06213|INSR_HUMAN	gi|114794482|pdb|2HR7|A	99.59	485	2	0	28	512	1	485	0.0	1016	gi|114794482|pdb|2HR7|A;gi|114794483|pdb|2HR7|B	2628	483	485	0	100.00	1	1	HLYPGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNYIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKI	HLYPGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDKASCENELLKFSYIRTSFDKI	1382	486	Chain A, Insulin Receptor (Domains 1-3)<>Chain B, Insulin Receptor (Domains 1-3)
-sp|P08100|OPSD_HUMAN	gi|16975387|pdb|1JFP|A	93.39	348	23	0	1	348	1	348	0.0	681	gi|16975387|pdb|1JFP|A;gi|22219255|pdb|1LN6|A;gi|157878065|pdb|1GZM|A;gi|157878066|pdb|1GZM|B;gi|157878298|pdb|1HZX|A;gi|157878299|pdb|1HZX|B;gi|157878979|pdb|1L9H|A;gi|157878980|pdb|1L9H|B;gi|157880263|pdb|1U19|A;gi|157880264|pdb|1U19|B;gi|157883606|pdb|2G87|A;gi|157883607|pdb|2G87|B;gi|157883830|pdb|2HPY|A;gi|157883831|pdb|2HPY|B;gi|157883860|pdb|2I35|A;gi|157883861|pdb|2I36|A;gi|157883862|pdb|2I36|B;gi|157883863|pdb|2I36|C;gi|157883864|pdb|2I37|A;gi|157883865|pdb|2I37|B;gi|157883866|pdb|2I37|C;gi|159795066|pdb|2PED|A;gi|159795067|pdb|2PED|B;gi|192988480|pdb|3CAP|A;gi|192988481|pdb|3CAP|B;gi|195927457|pdb|3C9L|A;gi|197107530|pdb|1F88|A;gi|197107531|pdb|1F88|B;gi|206582030|pdb|3DQB|A	1756	325	337	0	96.84	1	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA	348	348	Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)<>Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)<>Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form<>Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form<>Chain A, Crystal Structure Of Bovine Rhodopsin<>Chain B, Crystal Structure Of Bovine Rhodopsin<>Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms Resolution<>Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms Resolution<>Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms Resolution<>Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms Resolution<>Chain A, Crystallographic Model Of Bathorhodopsin<>Chain B, Crystallographic Model Of Bathorhodopsin<>Chain A, Crystallographic Model Of Lumirhodopsin<>Chain B, Crystallographic Model Of Lumirhodopsin<>Chain A, Crystal Structure Of Rhombohedral Crystal Form Of Ground- State Rhodopsin<>Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State Rhodopsin<>Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State Rhodopsin<>Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State Rhodopsin<>Chain A, Crystal Structure Of A Photoactivated Rhodopsin<>Chain B, Crystal Structure Of A Photoactivated Rhodopsin<>Chain C, Crystal Structure Of A Photoactivated Rhodopsin<>Chain A, Crystallographic Model Of 9-Cis-Rhodopsin<>Chain B, Crystallographic Model Of 9-Cis-Rhodopsin<>Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled Receptor Rhodopsin In Its Ligand-Free State<>Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled Receptor Rhodopsin In Its Ligand-Free State<>Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal Crystal Form<>Chain A, Crystal Structure Of Bovine Rhodopsin<>Chain B, Crystal Structure Of Bovine Rhodopsin<>Chain A, Crystal Structure Of The Active G-Protein-Coupled Receptor Opsin In Complex With A C-Terminal Peptide Derived From The Galpha Subunit Of Transducin
-sp|P08100|OPSD_HUMAN	gi|195927458|pdb|3C9M|A	93.10	348	24	0	1	348	1	348	0.0	674	gi|195927458|pdb|3C9M|A	1738	324	335	0	96.26	1	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	MCGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA	348	348	Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form
+sp|Q9BS26|ERP44_HUMAN	gi|193885198|pdb|2R2J|A	97.113	381	11	0	26	406	2	382	0.0	768	gi|193885198|pdb|2R2J|A	1982	370	372	0	97.64	1	1	PVTTEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFGDVSKPERYSGDNIIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHADCDKFRHPLLHIQKTPADCPVIAIDSFRHMYVFGDFKDVLIPGKLKQFVFDLHSGKLHREFHHGPDPTDTAPGEQAQDVASSPPESSFQKLAPSEYRYTLLRDRDEL	PLGSEITSLDTENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFGDVSKPERYSGDNIIYKPPGHSAPDXVYLGAXTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHXKEDTESLEIFQNEVARQLISEKGTINFLHADCDKFRHPLLHIQKTPADCPVIAIDSFRHXYVFGDFKDVLIPGKLKQFVFDLHSGKLHREFHHGPDPTDTAPGEQAQDVASSPPESSFQKLAPSEYRYTLLRDRDEL	406	382	Chain A, Crystal Structure Of Human Erp44
+sp|Q9BS26|ERP44_HUMAN	gi|88192228|pdb|2B5E|A	25.172	290	193	8	25	306	10	283	4e-20	95.1	gi|88192228|pdb|2B5E|A;gi|206581884|pdb|3BOA|A	235	73	133	24	45.86	1	1	TPVTTEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKR-EYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFGDVSKPERYSGDNI---IYKPPGHSAPDMVYLGA---MTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHADCDKF-RH	APEDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK-----NITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVVADLPAYLANETFVTPVIVQSGKIDADFNATFYSMANKHFNDYDFVSA--------ENADDDFKLSIYLPSAMDEP-VVYNGKKADIADADVFEKWLQVEALPYFGEIDGSVFAQYVESGLPLGYLFY--NDEEELEEYKPLFTELAKKNRGLMNFVSIDARKFGRH	406	504	Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase<>Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase.
+sp|Q9NSY1|BMP2K_HUMAN	gi|73536291|pdb|2BUJ|A	29.391	279	182	8	40	308	21	294	1e-22	105	gi|73536291|pdb|2BUJ|A;gi|73536292|pdb|2BUJ|B	262	82	130	15	46.59	1	1	GVRVFAVGRHQVTLEESLAEGGFSTVFLVR-THGGIRCALKRMYVNNMPDLNVCKREITIMKELSGHKNIVGYLDCAVNSISDNVWEVLILMEYCRAGQVVNQMNKKLQTG--FTEPEVLQIFCDTCEAVARLHQCKTPIIHRDLKVENILLNDGGNYVLCDFGSATNKFLNPQKDG-VNVVEEEIKKYTTLSYRAPEMINLYGGKPITTKADIWALGCLLYKLCFFTLPF------GESQVAICDGNFTIPDNSRYSRNIHCLIRFMLEPDPEHRPDI	GHMVIIDNKHYLFIQK-LGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREAD-MHRLFNHPNILRLVAYCLRERGAKH-EAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIH--AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLSIPQSPRHSSALWQLLNSMMTVDPHQRPHI	1161	317	Chain A, Crystal Structure Of The Human Serine-Threonine Kinase 16 In Complex With Staurosporine<>Chain B, Crystal Structure Of The Human Serine-Threonine Kinase 16 In Complex With Staurosporine
+sp|Q9NSY1|BMP2K_HUMAN	gi|270346335|pdb|2WQM|A	27.206	272	166	12	53	311	36	288	6e-17	86.3	gi|270346335|pdb|2WQM|A;gi|270346336|pdb|2WQN|A	212	74	129	32	47.43	1	1	LEESLAEGGFSTVFLVRTH-GGIRCALKRMYVNNMPDLNV---CKREITIMKELSGHKNIVGYLDCAVNSISDNVWEVLILMEYCRAGQVVNQMN--KKLQTGFTEPEVLQIFCDTCEAVARLHQCKTPIIHRDLKVENILLNDGGNYVLCDFGSATNKFLNPQKDGVNVVEEEIKKYTTLSYRAPEMINLYGGKPITTKADIWALGCLLYKLCFFTLPFGESQV---AICD----GNFTIPDNSRYSRNIHCLIRFMLEPDPEHRPDIFQV	IEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLN-HPNVIKYY---ASFIEDN--ELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRR--VMHRDIKPANVFITATGVVKLGDLG--LGRFFSSKTTAAHSL------VGTPYYMSPERIHENG---YNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDVTYV	1161	310	Chain A, Structure Of Apo Human Nek7<>Chain A, Structure Of Adp-Bound Human Nek7
+sp|P06213|INSR_HUMAN	gi|116667097|pdb|2DTG|E	95.905	928	7	2	28	955	1	897	0.0	1846	gi|116667097|pdb|2DTG|E	4781	890	893	31	96.23	1	1	HLYPGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNYIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRKTSSGTGAEDPRPSRKRRSLGDVGNVTVAVPTVAAFPNTSSTSVPTSPEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCVSRKHFALERGCRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSNIA	HLYPGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFV------------PRPSRKRRSLGDVGNA-------------------GNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSNIA	1382	897	Chain E, Insulin Receptor (Ir) Ectodomain In Complex With Fab's
+sp|P06213|INSR_HUMAN	gi|114794482|pdb|2HR7|A	99.588	485	2	0	28	512	1	485	0.0	1016	gi|114794482|pdb|2HR7|A;gi|114794483|pdb|2HR7|B	2628	483	485	0	100.00	1	1	HLYPGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNYIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKI	HLYPGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDKASCENELLKFSYIRTSFDKI	1382	486	Chain A, Insulin Receptor (Domains 1-3)<>Chain B, Insulin Receptor (Domains 1-3)
+sp|P08100|OPSD_HUMAN	gi|16975387|pdb|1JFP|A	93.391	348	23	0	1	348	1	348	0.0	681	gi|16975387|pdb|1JFP|A;gi|22219255|pdb|1LN6|A;gi|157878065|pdb|1GZM|A;gi|157878066|pdb|1GZM|B;gi|157878298|pdb|1HZX|A;gi|157878299|pdb|1HZX|B;gi|157878979|pdb|1L9H|A;gi|157878980|pdb|1L9H|B;gi|157880263|pdb|1U19|A;gi|157880264|pdb|1U19|B;gi|157883606|pdb|2G87|A;gi|157883607|pdb|2G87|B;gi|157883830|pdb|2HPY|A;gi|157883831|pdb|2HPY|B;gi|157883860|pdb|2I35|A;gi|157883861|pdb|2I36|A;gi|157883862|pdb|2I36|B;gi|157883863|pdb|2I36|C;gi|157883864|pdb|2I37|A;gi|157883865|pdb|2I37|B;gi|157883866|pdb|2I37|C;gi|159795066|pdb|2PED|A;gi|159795067|pdb|2PED|B;gi|192988480|pdb|3CAP|A;gi|192988481|pdb|3CAP|B;gi|195927457|pdb|3C9L|A;gi|197107530|pdb|1F88|A;gi|197107531|pdb|1F88|B;gi|206582030|pdb|3DQB|A	1756	325	337	0	96.84	1	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA	348	348	Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)<>Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)<>Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form<>Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form<>Chain A, Crystal Structure Of Bovine Rhodopsin<>Chain B, Crystal Structure Of Bovine Rhodopsin<>Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms Resolution<>Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms Resolution<>Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms Resolution<>Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms Resolution<>Chain A, Crystallographic Model Of Bathorhodopsin<>Chain B, Crystallographic Model Of Bathorhodopsin<>Chain A, Crystallographic Model Of Lumirhodopsin<>Chain B, Crystallographic Model Of Lumirhodopsin<>Chain A, Crystal Structure Of Rhombohedral Crystal Form Of Ground- State Rhodopsin<>Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State Rhodopsin<>Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State Rhodopsin<>Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State Rhodopsin<>Chain A, Crystal Structure Of A Photoactivated Rhodopsin<>Chain B, Crystal Structure Of A Photoactivated Rhodopsin<>Chain C, Crystal Structure Of A Photoactivated Rhodopsin<>Chain A, Crystallographic Model Of 9-Cis-Rhodopsin<>Chain B, Crystallographic Model Of 9-Cis-Rhodopsin<>Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled Receptor Rhodopsin In Its Ligand-Free State<>Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled Receptor Rhodopsin In Its Ligand-Free State<>Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal Crystal Form<>Chain A, Crystal Structure Of Bovine Rhodopsin<>Chain B, Crystal Structure Of Bovine Rhodopsin<>Chain A, Crystal Structure Of The Active G-Protein-Coupled Receptor Opsin In Complex With A C-Terminal Peptide Derived From The Galpha Subunit Of Transducin
+sp|P08100|OPSD_HUMAN	gi|195927458|pdb|3C9M|A	93.103	348	24	0	1	348	1	348	0.0	674	gi|195927458|pdb|3C9M|A	1738	324	335	0	96.26	1	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	MCGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA	348	348	Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form
--- a/test-data/blastp_human_vs_pdb_seg_no_converted_std.tabular	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/blastp_human_vs_pdb_seg_no_converted_std.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -1,8 +1,8 @@
-sp|Q9BS26|ERP44_HUMAN	gi|193885198|pdb|2R2J|A	97.11	381	11	0	26	406	2	382	0.0	768
-sp|Q9BS26|ERP44_HUMAN	gi|88192228|pdb|2B5E|A	25.17	290	193	8	25	306	10	283	4e-20	95.1
-sp|Q9NSY1|BMP2K_HUMAN	gi|73536291|pdb|2BUJ|A	29.39	279	182	8	40	308	21	294	1e-22	105
-sp|Q9NSY1|BMP2K_HUMAN	gi|270346335|pdb|2WQM|A	27.21	272	166	12	53	311	36	288	6e-17	86.3
-sp|P06213|INSR_HUMAN	gi|116667097|pdb|2DTG|E	95.91	928	7	2	28	955	1	897	0.0	1846
-sp|P06213|INSR_HUMAN	gi|114794482|pdb|2HR7|A	99.59	485	2	0	28	512	1	485	0.0	1016
-sp|P08100|OPSD_HUMAN	gi|16975387|pdb|1JFP|A	93.39	348	23	0	1	348	1	348	0.0	681
-sp|P08100|OPSD_HUMAN	gi|195927458|pdb|3C9M|A	93.10	348	24	0	1	348	1	348	0.0	674
+sp|Q9BS26|ERP44_HUMAN	gi|193885198|pdb|2R2J|A	97.113	381	11	0	26	406	2	382	0.0	768
+sp|Q9BS26|ERP44_HUMAN	gi|88192228|pdb|2B5E|A	25.172	290	193	8	25	306	10	283	4e-20	95.1
+sp|Q9NSY1|BMP2K_HUMAN	gi|73536291|pdb|2BUJ|A	29.391	279	182	8	40	308	21	294	1e-22	105
+sp|Q9NSY1|BMP2K_HUMAN	gi|270346335|pdb|2WQM|A	27.206	272	166	12	53	311	36	288	6e-17	86.3
+sp|P06213|INSR_HUMAN	gi|116667097|pdb|2DTG|E	95.905	928	7	2	28	955	1	897	0.0	1846
+sp|P06213|INSR_HUMAN	gi|114794482|pdb|2HR7|A	99.588	485	2	0	28	512	1	485	0.0	1016
+sp|P08100|OPSD_HUMAN	gi|16975387|pdb|1JFP|A	93.391	348	23	0	1	348	1	348	0.0	681
+sp|P08100|OPSD_HUMAN	gi|195927458|pdb|3C9M|A	93.103	348	24	0	1	348	1	348	0.0	674
--- a/test-data/blastp_rhodopsin_vs_four_human.tabular	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/blastp_rhodopsin_vs_four_human.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -1,6 +1,6 @@
-gi|57163783|ref|NP_001009242.1|	sp|P08100|OPSD_HUMAN	96.55	348	12	0	1	348	1	348	0.0	701
-gi|3024260|sp|P56514.1|OPSD_BUFBU	sp|P08100|OPSD_HUMAN	83.33	354	53	2	1	354	1	348	0.0	605
-gi|283855846|gb|ADB45242.1|	sp|P08100|OPSD_HUMAN	94.82	328	17	0	1	328	11	338	0.0	630
-gi|283855823|gb|ADB45229.1|	sp|P08100|OPSD_HUMAN	94.82	328	17	0	1	328	11	338	0.0	630
-gi|223523|prf||0811197A	sp|P08100|OPSD_HUMAN	93.10	348	23	1	1	347	1	348	0.0	651
-gi|12583665|dbj|BAB21486.1|	sp|P08100|OPSD_HUMAN	81.09	349	65	1	1	349	1	348	0.0	587
+gi|57163783|ref|NP_001009242.1|	sp|P08100|OPSD_HUMAN	96.552	348	12	0	1	348	1	348	0.0	701
+gi|3024260|sp|P56514.1|OPSD_BUFBU	sp|P08100|OPSD_HUMAN	83.333	354	53	2	1	354	1	348	0.0	605
+gi|283855846|gb|ADB45242.1|	sp|P08100|OPSD_HUMAN	94.817	328	17	0	1	328	11	338	0.0	630
+gi|283855823|gb|ADB45229.1|	sp|P08100|OPSD_HUMAN	94.817	328	17	0	1	328	11	338	0.0	630
+gi|223523|prf||0811197A	sp|P08100|OPSD_HUMAN	93.103	348	23	1	1	347	1	348	0.0	651
+gi|12583665|dbj|BAB21486.1|	sp|P08100|OPSD_HUMAN	81.089	349	65	1	1	349	1	348	0.0	587
--- a/test-data/blastp_sample_converted.tabular	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/blastp_sample_converted.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -1,9 +1,9 @@
-Sample	gi|119953746|ref|YP_950551.1|	96.90	516	16	0	1	516	27	542	0.0	949
-Sample	gi|148986157|ref|ZP_01819143.1|	41.27	252	115	3	49	300	679	897	2e-41	174
-Sample	gi|77411259|ref|ZP_00787609.1|	41.00	261	143	2	50	310	655	904	8e-39	165
-Sample	gi|76786754|ref|YP_329383.1|	39.46	261	147	2	50	310	655	904	7e-37	159
-Sample	gi|153811333|ref|ZP_01964001.1|	29.98	557	277	18	3	516	573	1059	2e-36	157
-Sample	gi|56962696|ref|YP_174422.1|	28.79	389	228	8	48	433	123	465	3e-33	146
-Sample	gi|50914476|ref|YP_060448.1|	43.82	178	100	0	50	227	655	832	5e-33	146
-Sample	gi|29374987|ref|NP_814140.1|	25.46	432	244	8	73	482	545	920	7e-31	139
-Sample	gi|163941333|ref|YP_001646217.1|	27.19	434	287	7	61	480	142	560	8e-31	138
+Sample	gi|119953746|ref|YP_950551.1|	96.899	516	16	0	1	516	27	542	0.0	949
+Sample	gi|148986157|ref|ZP_01819143.1|	41.270	252	115	3	49	300	679	897	2e-41	174
+Sample	gi|77411259|ref|ZP_00787609.1|	40.996	261	143	2	50	310	655	904	8e-39	165
+Sample	gi|76786754|ref|YP_329383.1|	39.464	261	147	2	50	310	655	904	7e-37	159
+Sample	gi|153811333|ref|ZP_01964001.1|	29.982	557	277	18	3	516	573	1059	2e-36	157
+Sample	gi|56962696|ref|YP_174422.1|	28.792	389	228	8	48	433	123	465	3e-33	146
+Sample	gi|50914476|ref|YP_060448.1|	43.820	178	100	0	50	227	655	832	5e-33	146
+Sample	gi|29374987|ref|NP_814140.1|	25.463	432	244	8	73	482	545	920	7e-31	139
+Sample	gi|163941333|ref|YP_001646217.1|	27.189	434	287	7	61	480	142	560	8e-31	138
--- a/test-data/blastx_rhodopsin_vs_four_human.tabular	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/blastx_rhodopsin_vs_four_human.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -1,10 +1,10 @@
-gi|57163782|ref|NM_001009242.1|	sp|P08100|OPSD_HUMAN	96.55	348	12	0	1	1044	1	348	0.0	639
-gi|2734705|gb|U59921.1|BBU59921	sp|P08100|OPSD_HUMAN	85.24	332	49	0	42	1037	1	332	0.0	551
-gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	96.40	111	4	0	1	333	11	121	3e-67	220
-gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	92.31	65	5	0	3174	3368	248	312	2e-35	127
-gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	91.53	59	5	0	2855	3031	177	235	2e-33	121
-gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	93.22	59	4	0	1404	1580	119	177	1e-25	97.1
-gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	88.46	26	3	0	4222	4299	312	337	1e-12	57.0
-gi|283855822|gb|GQ290312.1|	sp|P08100|OPSD_HUMAN	95.09	326	16	0	1	978	11	336	0.0	589
-gi|18148870|dbj|AB062417.1|	sp|P08100|OPSD_HUMAN	93.39	348	23	0	1	1044	1	348	0.0	619
-gi|12583664|dbj|AB043817.1|	sp|P08100|OPSD_HUMAN	81.68	333	61	0	23	1021	1	333	0.0	532
+gi|57163782|ref|NM_001009242.1|	sp|P08100|OPSD_HUMAN	96.552	348	12	0	1	1044	1	348	0.0	639
+gi|2734705|gb|U59921.1|BBU59921	sp|P08100|OPSD_HUMAN	85.241	332	49	0	42	1037	1	332	0.0	551
+gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	96.396	111	4	0	1	333	11	121	3.78e-67	220
+gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	92.308	65	5	0	3174	3368	248	312	4.13e-35	127
+gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	91.525	59	5	0	2855	3031	177	235	3.99e-33	121
+gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	93.220	59	4	0	1404	1580	119	177	7.46e-25	97.1
+gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	88.462	26	3	0	4222	4299	312	337	1.13e-11	57.0
+gi|283855822|gb|GQ290312.1|	sp|P08100|OPSD_HUMAN	95.092	326	16	0	1	978	11	336	0.0	589
+gi|18148870|dbj|AB062417.1|	sp|P08100|OPSD_HUMAN	93.391	348	23	0	1	1044	1	348	0.0	619
+gi|12583664|dbj|AB043817.1|	sp|P08100|OPSD_HUMAN	81.682	333	61	0	23	1021	1	333	0.0	532
--- a/test-data/blastx_rhodopsin_vs_four_human.xml	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/blastx_rhodopsin_vs_four_human.xml	Wed Apr 19 05:27:19 2017 -0400
@@ -2,7 +2,7 @@
 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
 <BlastOutput>
   <BlastOutput_program>blastx</BlastOutput_program>
-  <BlastOutput_version>BLASTX 2.2.31+</BlastOutput_version>
+  <BlastOutput_version>BLASTX 2.5.0+</BlastOutput_version>
   <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
   <BlastOutput_db></BlastOutput_db>
   <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
@@ -24,69 +24,9 @@
   <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
   <Iteration_query-len>1047</Iteration_query-len>
 <Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>30</Statistics_hsp-len>
-      <Statistics_eff-space>119944</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>2</Iteration_iter-num>
-  <Iteration_query-ID>Query_1</Iteration_query-ID>
-  <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
-  <Iteration_query-len>1047</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>30</Statistics_hsp-len>
-      <Statistics_eff-space>119944</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>3</Iteration_iter-num>
-  <Iteration_query-ID>Query_1</Iteration_query-ID>
-  <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
-  <Iteration_query-len>1047</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>30</Statistics_hsp-len>
-      <Statistics_eff-space>119944</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>4</Iteration_iter-num>
-  <Iteration_query-ID>Query_1</Iteration_query-ID>
-  <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
-  <Iteration_query-len>1047</Iteration_query-len>
-<Iteration_hits>
 <Hit>
   <Hit_num>1</Hit_num>
-  <Hit_id>Subject_4</Hit_id>
+  <Hit_id>sp|P08100|OPSD_HUMAN</Hit_id>
   <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
   <Hit_accession>Subject_4</Hit_accession>
   <Hit_len>348</Hit_len>
@@ -117,8 +57,8 @@
     <Statistics>
       <Statistics_db-num>0</Statistics_db-num>
       <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>30</Statistics_hsp-len>
-      <Statistics_eff-space>119944</Statistics_eff-space>
+      <Statistics_hsp-len>45</Statistics_hsp-len>
+      <Statistics_eff-space>947568</Statistics_eff-space>
       <Statistics_kappa>0.041</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
@@ -126,74 +66,14 @@
   </Iteration_stat>
 </Iteration>
 <Iteration>
-  <Iteration_iter-num>5</Iteration_iter-num>
-  <Iteration_query-ID>Query_2</Iteration_query-ID>
-  <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
-  <Iteration_query-len>1574</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>33</Statistics_hsp-len>
-      <Statistics_eff-space>183143</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>6</Iteration_iter-num>
-  <Iteration_query-ID>Query_2</Iteration_query-ID>
-  <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
-  <Iteration_query-len>1574</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>33</Statistics_hsp-len>
-      <Statistics_eff-space>183143</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>7</Iteration_iter-num>
-  <Iteration_query-ID>Query_2</Iteration_query-ID>
-  <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
-  <Iteration_query-len>1574</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>33</Statistics_hsp-len>
-      <Statistics_eff-space>183143</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>8</Iteration_iter-num>
+  <Iteration_iter-num>2</Iteration_iter-num>
   <Iteration_query-ID>Query_2</Iteration_query-ID>
   <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
   <Iteration_query-len>1574</Iteration_query-len>
 <Iteration_hits>
 <Hit>
   <Hit_num>1</Hit_num>
-  <Hit_id>Subject_4</Hit_id>
+  <Hit_id>sp|P08100|OPSD_HUMAN</Hit_id>
   <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
   <Hit_accession>Subject_4</Hit_accession>
   <Hit_len>348</Hit_len>
@@ -224,8 +104,8 @@
     <Statistics>
       <Statistics_db-num>0</Statistics_db-num>
       <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>33</Statistics_hsp-len>
-      <Statistics_eff-space>183143</Statistics_eff-space>
+      <Statistics_hsp-len>48</Statistics_hsp-len>
+      <Statistics_eff-space>1477980</Statistics_eff-space>
       <Statistics_kappa>0.041</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
@@ -233,74 +113,14 @@
   </Iteration_stat>
 </Iteration>
 <Iteration>
-  <Iteration_iter-num>9</Iteration_iter-num>
-  <Iteration_query-ID>Query_3</Iteration_query-ID>
-  <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
-  <Iteration_query-len>4301</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>40</Statistics_hsp-len>
-      <Statistics_eff-space>509838</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>10</Iteration_iter-num>
-  <Iteration_query-ID>Query_3</Iteration_query-ID>
-  <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
-  <Iteration_query-len>4301</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>40</Statistics_hsp-len>
-      <Statistics_eff-space>509838</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>11</Iteration_iter-num>
-  <Iteration_query-ID>Query_3</Iteration_query-ID>
-  <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
-  <Iteration_query-len>4301</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>40</Statistics_hsp-len>
-      <Statistics_eff-space>509838</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>12</Iteration_iter-num>
+  <Iteration_iter-num>3</Iteration_iter-num>
   <Iteration_query-ID>Query_3</Iteration_query-ID>
   <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
   <Iteration_query-len>4301</Iteration_query-len>
 <Iteration_hits>
 <Hit>
   <Hit_num>1</Hit_num>
-  <Hit_id>Subject_4</Hit_id>
+  <Hit_id>sp|P08100|OPSD_HUMAN</Hit_id>
   <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
   <Hit_accession>Subject_4</Hit_accession>
   <Hit_len>348</Hit_len>
@@ -309,7 +129,7 @@
       <Hsp_num>1</Hsp_num>
       <Hsp_bit-score>220.705</Hsp_bit-score>
       <Hsp_score>561</Hsp_score>
-      <Hsp_evalue>3.21377e-67</Hsp_evalue>
+      <Hsp_evalue>3.78353e-67</Hsp_evalue>
       <Hsp_query-from>1</Hsp_query-from>
       <Hsp_query-to>333</Hsp_query-to>
       <Hsp_hit-from>11</Hsp_hit-from>
@@ -328,7 +148,7 @@
       <Hsp_num>2</Hsp_num>
       <Hsp_bit-score>127.487</Hsp_bit-score>
       <Hsp_score>319</Hsp_score>
-      <Hsp_evalue>1.95079e-35</Hsp_evalue>
+      <Hsp_evalue>4.12812e-35</Hsp_evalue>
       <Hsp_query-from>3174</Hsp_query-from>
       <Hsp_query-to>3368</Hsp_query-to>
       <Hsp_hit-from>248</Hsp_hit-from>
@@ -347,7 +167,7 @@
       <Hsp_num>3</Hsp_num>
       <Hsp_bit-score>121.709</Hsp_bit-score>
       <Hsp_score>304</Hsp_score>
-      <Hsp_evalue>1.62516e-33</Hsp_evalue>
+      <Hsp_evalue>3.99023e-33</Hsp_evalue>
       <Hsp_query-from>2855</Hsp_query-from>
       <Hsp_query-to>3031</Hsp_query-to>
       <Hsp_hit-from>177</Hsp_hit-from>
@@ -366,7 +186,7 @@
       <Hsp_num>4</Hsp_num>
       <Hsp_bit-score>97.0561</Hsp_bit-score>
       <Hsp_score>240</Hsp_score>
-      <Hsp_evalue>1.16473e-25</Hsp_evalue>
+      <Hsp_evalue>7.46148e-25</Hsp_evalue>
       <Hsp_query-from>1404</Hsp_query-from>
       <Hsp_query-to>1580</Hsp_query-to>
       <Hsp_hit-from>119</Hsp_hit-from>
@@ -385,7 +205,7 @@
       <Hsp_num>5</Hsp_num>
       <Hsp_bit-score>56.9954</Hsp_bit-score>
       <Hsp_score>136</Hsp_score>
-      <Hsp_evalue>1.23645e-12</Hsp_evalue>
+      <Hsp_evalue>1.12842e-11</Hsp_evalue>
       <Hsp_query-from>4222</Hsp_query-from>
       <Hsp_query-to>4299</Hsp_query-to>
       <Hsp_hit-from>312</Hsp_hit-from>
@@ -407,8 +227,8 @@
     <Statistics>
       <Statistics_db-num>0</Statistics_db-num>
       <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>40</Statistics_hsp-len>
-      <Statistics_eff-space>509838</Statistics_eff-space>
+      <Statistics_hsp-len>55</Statistics_hsp-len>
+      <Statistics_eff-space>4240106</Statistics_eff-space>
       <Statistics_kappa>0.041</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
@@ -416,74 +236,14 @@
   </Iteration_stat>
 </Iteration>
 <Iteration>
-  <Iteration_iter-num>13</Iteration_iter-num>
-  <Iteration_query-ID>Query_4</Iteration_query-ID>
-  <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def>
-  <Iteration_query-len>983</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>29</Statistics_hsp-len>
-      <Statistics_eff-space>112346</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>14</Iteration_iter-num>
-  <Iteration_query-ID>Query_4</Iteration_query-ID>
-  <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def>
-  <Iteration_query-len>983</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>29</Statistics_hsp-len>
-      <Statistics_eff-space>112346</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>15</Iteration_iter-num>
-  <Iteration_query-ID>Query_4</Iteration_query-ID>
-  <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def>
-  <Iteration_query-len>983</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>29</Statistics_hsp-len>
-      <Statistics_eff-space>112346</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>16</Iteration_iter-num>
+  <Iteration_iter-num>4</Iteration_iter-num>
   <Iteration_query-ID>Query_4</Iteration_query-ID>
   <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def>
   <Iteration_query-len>983</Iteration_query-len>
 <Iteration_hits>
 <Hit>
   <Hit_num>1</Hit_num>
-  <Hit_id>Subject_4</Hit_id>
+  <Hit_id>sp|P08100|OPSD_HUMAN</Hit_id>
   <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
   <Hit_accession>Subject_4</Hit_accession>
   <Hit_len>348</Hit_len>
@@ -514,8 +274,8 @@
     <Statistics>
       <Statistics_db-num>0</Statistics_db-num>
       <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>29</Statistics_hsp-len>
-      <Statistics_eff-space>112346</Statistics_eff-space>
+      <Statistics_hsp-len>44</Statistics_hsp-len>
+      <Statistics_eff-space>883243</Statistics_eff-space>
       <Statistics_kappa>0.041</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
@@ -523,74 +283,14 @@
   </Iteration_stat>
 </Iteration>
 <Iteration>
-  <Iteration_iter-num>17</Iteration_iter-num>
-  <Iteration_query-ID>Query_5</Iteration_query-ID>
-  <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def>
-  <Iteration_query-len>1047</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>30</Statistics_hsp-len>
-      <Statistics_eff-space>119944</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>18</Iteration_iter-num>
-  <Iteration_query-ID>Query_5</Iteration_query-ID>
-  <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def>
-  <Iteration_query-len>1047</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>30</Statistics_hsp-len>
-      <Statistics_eff-space>119944</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>19</Iteration_iter-num>
-  <Iteration_query-ID>Query_5</Iteration_query-ID>
-  <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def>
-  <Iteration_query-len>1047</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>30</Statistics_hsp-len>
-      <Statistics_eff-space>119944</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>20</Iteration_iter-num>
+  <Iteration_iter-num>5</Iteration_iter-num>
   <Iteration_query-ID>Query_5</Iteration_query-ID>
   <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def>
   <Iteration_query-len>1047</Iteration_query-len>
 <Iteration_hits>
 <Hit>
   <Hit_num>1</Hit_num>
-  <Hit_id>Subject_4</Hit_id>
+  <Hit_id>sp|P08100|OPSD_HUMAN</Hit_id>
   <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
   <Hit_accession>Subject_4</Hit_accession>
   <Hit_len>348</Hit_len>
@@ -621,8 +321,8 @@
     <Statistics>
       <Statistics_db-num>0</Statistics_db-num>
       <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>30</Statistics_hsp-len>
-      <Statistics_eff-space>119944</Statistics_eff-space>
+      <Statistics_hsp-len>45</Statistics_hsp-len>
+      <Statistics_eff-space>947568</Statistics_eff-space>
       <Statistics_kappa>0.041</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
@@ -630,74 +330,14 @@
   </Iteration_stat>
 </Iteration>
 <Iteration>
-  <Iteration_iter-num>21</Iteration_iter-num>
-  <Iteration_query-ID>Query_6</Iteration_query-ID>
-  <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def>
-  <Iteration_query-len>1344</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>32</Statistics_hsp-len>
-      <Statistics_eff-space>155584</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>22</Iteration_iter-num>
-  <Iteration_query-ID>Query_6</Iteration_query-ID>
-  <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def>
-  <Iteration_query-len>1344</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>32</Statistics_hsp-len>
-      <Statistics_eff-space>155584</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>23</Iteration_iter-num>
-  <Iteration_query-ID>Query_6</Iteration_query-ID>
-  <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def>
-  <Iteration_query-len>1344</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>32</Statistics_hsp-len>
-      <Statistics_eff-space>155584</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>24</Iteration_iter-num>
+  <Iteration_iter-num>6</Iteration_iter-num>
   <Iteration_query-ID>Query_6</Iteration_query-ID>
   <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def>
   <Iteration_query-len>1344</Iteration_query-len>
 <Iteration_hits>
 <Hit>
   <Hit_num>1</Hit_num>
-  <Hit_id>Subject_4</Hit_id>
+  <Hit_id>sp|P08100|OPSD_HUMAN</Hit_id>
   <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
   <Hit_accession>Subject_4</Hit_accession>
   <Hit_len>348</Hit_len>
@@ -728,8 +368,8 @@
     <Statistics>
       <Statistics_db-num>0</Statistics_db-num>
       <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>32</Statistics_hsp-len>
-      <Statistics_eff-space>155584</Statistics_eff-space>
+      <Statistics_hsp-len>47</Statistics_hsp-len>
+      <Statistics_eff-space>1246709</Statistics_eff-space>
       <Statistics_kappa>0.041</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
--- a/test-data/blastx_rhodopsin_vs_four_human_all.tabular	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/blastx_rhodopsin_vs_four_human_all.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -1,10 +1,10 @@
-gi|57163782|ref|NM_001009242.1|	sp|P08100|OPSD_HUMAN	96.55	348	12	0	1	1044	1	348	0.0	639	sp|P08100|OPSD_HUMAN	1647	336	343	0	98.56	1	0	MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	1047	348	N/A	0	gi|57163782|ref|NM_001009242.1|	gi|57163782|ref|NM_001009242.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	1/0	15KA71FL4TS79VA9ML34VI71LI7SASA21LI13TA1GV11	99	33	N/A	N/A	N/A	N/A	N/A
-gi|2734705|gb|U59921.1|BBU59921	sp|P08100|OPSD_HUMAN	85.24	332	49	0	42	1037	1	332	0.0	551	sp|P08100|OPSD_HUMAN	1419	283	315	0	94.88	3	0	MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDD	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE	1574	348	N/A	0	gi|2734705|gb|U59921.1|BBU59921	gi|2734705|gb|U59921.1|BBU59921	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	3/0	10IV1MF2KA20YF1IM1CA7LV7ML5IV17FV1NDHL4CG3VS1ML1ST1MLNH3IVLF1AP3YNVL36SG4VI7IV3SA2VA3LA9ML5VI26LM8RQ2CF30VIFA13FY2STNH3EN7VI7SASA9LM8IL2LI6FL1ED1DE	63	21	N/A	N/A	N/A	N/A	N/A
-gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	96.40	111	4	0	1	333	11	121	3e-67	220	sp|P08100|OPSD_HUMAN	561	107	109	0	98.20	1	0	VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG	4301	348	N/A	0	gi|283855845|gb|GQ290303.1|	gi|283855845|gb|GQ290303.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	1/0	5KA9HY61FL4TS28	22	3	N/A	N/A	N/A	N/A	N/A
-gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	92.31	65	5	0	3174	3368	248	312	2e-35	127	sp|P08100|OPSD_HUMAN	319	60	64	0	98.46	3	0	KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ	KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ	4301	348	N/A	0	gi|283855845|gb|GQ290303.1|	gi|283855845|gb|GQ290303.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	3/0	18LV3GS19LI7SASA13	22	2	N/A	N/A	N/A	N/A	N/A
-gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	91.53	59	5	0	2855	3031	177	235	2e-33	121	sp|P08100|OPSD_HUMAN	304	54	57	0	96.61	2	0	RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS	RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA	4301	348	N/A	0	gi|283855845|gb|GQ290303.1|	gi|283855845|gb|GQ290303.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	2/0	6ML34VI14VARASA	22	1	N/A	N/A	N/A	N/A	N/A
-gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	93.22	59	4	0	1404	1580	119	177	1e-25	97.1	sp|P08100|OPSD_HUMAN	240	55	56	0	94.92	3	0	LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR	LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR	4301	348	N/A	0	gi|283855845|gb|GQ290303.1|	gi|283855845|gb|GQ290303.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	3/0	1AG36LV1LF13VA4	22	1	N/A	N/A	N/A	N/A	N/A
-gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	88.46	26	3	0	4222	4299	312	337	1e-12	57.0	sp|P08100|OPSD_HUMAN	136	23	24	0	92.31	1	0	QFRNCMLTTLCCGKNPLGDDEASTTA	QFRNCMLTTICCGKNPLGDDEASATV	4301	348	N/A	0	gi|283855845|gb|GQ290303.1|	gi|283855845|gb|GQ290303.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	1/0	9LI13TA1AV	22	1	N/A	N/A	N/A	N/A	N/A
-gi|283855822|gb|GQ290312.1|	sp|P08100|OPSD_HUMAN	95.09	326	16	0	1	978	11	336	0.0	589	sp|P08100|OPSD_HUMAN	1518	310	322	0	98.77	1	0	VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT	983	348	N/A	0	gi|283855822|gb|GQ290312.1|	gi|283855822|gb|GQ290312.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	1/0	5KA66ND4FL4TS5ML7AP49LV25ML34VI40VI6LV19VI11SASA21LI13TA1	99	33	N/A	N/A	N/A	N/A	N/A
-gi|18148870|dbj|AB062417.1|	sp|P08100|OPSD_HUMAN	93.39	348	23	0	1	1044	1	348	0.0	619	sp|P08100|OPSD_HUMAN	1596	325	337	0	96.84	1	0	MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	1047	348	N/A	0	gi|18148870|dbj|AB062417.1|	gi|18148870|dbj|AB062417.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	1/0	15KA9AY22MV38FL4TS79VA9ML10PLHKEP1TV14IT2LM1VI47LV3GS11DN14TSSA1VI17VL2LI13TA13	99	33	N/A	N/A	N/A	N/A	N/A
-gi|12583664|dbj|AB043817.1|	sp|P08100|OPSD_HUMAN	81.68	333	61	0	23	1021	1	333	0.0	532	sp|P08100|OPSD_HUMAN	1371	272	307	0	92.19	2	0	MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDG	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA	1344	348	N/A	0	gi|12583664|dbj|AB043817.1|	gi|12583664|dbj|AB043817.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	2/0	10IV1MF22AQ2AM1SA4FL2IVAL12IVEQ23FL4TS1ML3ML12IL14CS8WYMV5VMTS6SN6MAVF2TV6LA3FA20RLAK1GEIV10TVCV2ST2LMAIVI1SF4RQ2CF12EA3RK2RK6VI4SA2VI9WF8TN9SA5SA1LI3MV3CM6HN2IL2LI6FLEGEDEDDEGA	74	25	N/A	N/A	N/A	N/A	N/A
+gi|57163782|ref|NM_001009242.1|	sp|P08100|OPSD_HUMAN	96.552	348	12	0	1	1044	1	348	0.0	639	sp|P08100|OPSD_HUMAN	1647	336	343	0	98.56	1	0	MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	1047	348	N/A	0	gi|57163782|ref|NM_001009242.1|	gi|57163782|ref|NM_001009242.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	1/0	15KA71FL4TS79VA9ML34VI71LI7SASA21LI13TA1GV11	99	33	N/A	N/A	N/A	N/A	N/A
+gi|2734705|gb|U59921.1|BBU59921	sp|P08100|OPSD_HUMAN	85.241	332	49	0	42	1037	1	332	0.0	551	sp|P08100|OPSD_HUMAN	1419	283	315	0	94.88	3	0	MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDD	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE	1574	348	N/A	0	gi|2734705|gb|U59921.1|BBU59921	gi|2734705|gb|U59921.1|BBU59921	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	3/0	10IV1MF2KA20YF1IM1CA7LV7ML5IV17FV1NDHL4CG3VS1ML1ST1MLNH3IVLF1AP3YNVL36SG4VI7IV3SA2VA3LA9ML5VI26LM8RQ2CF30VIFA13FY2STNH3EN7VI7SASA9LM8IL2LI6FL1ED1DE	63	21	N/A	N/A	N/A	N/A	N/A
+gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	96.396	111	4	0	1	333	11	121	3.78e-67	220	sp|P08100|OPSD_HUMAN	561	107	109	0	98.20	1	0	VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG	4301	348	N/A	0	gi|283855845|gb|GQ290303.1|	gi|283855845|gb|GQ290303.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	1/0	5KA9HY61FL4TS28	22	3	N/A	N/A	N/A	N/A	N/A
+gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	92.308	65	5	0	3174	3368	248	312	4.13e-35	127	sp|P08100|OPSD_HUMAN	319	60	64	0	98.46	3	0	KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ	KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ	4301	348	N/A	0	gi|283855845|gb|GQ290303.1|	gi|283855845|gb|GQ290303.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	3/0	18LV3GS19LI7SASA13	22	2	N/A	N/A	N/A	N/A	N/A
+gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	91.525	59	5	0	2855	3031	177	235	3.99e-33	121	sp|P08100|OPSD_HUMAN	304	54	57	0	96.61	2	0	RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS	RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA	4301	348	N/A	0	gi|283855845|gb|GQ290303.1|	gi|283855845|gb|GQ290303.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	2/0	6ML34VI14VARASA	22	1	N/A	N/A	N/A	N/A	N/A
+gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	93.220	59	4	0	1404	1580	119	177	7.46e-25	97.1	sp|P08100|OPSD_HUMAN	240	55	56	0	94.92	3	0	LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR	LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR	4301	348	N/A	0	gi|283855845|gb|GQ290303.1|	gi|283855845|gb|GQ290303.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	3/0	1AG36LV1LF13VA4	22	1	N/A	N/A	N/A	N/A	N/A
+gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	88.462	26	3	0	4222	4299	312	337	1.13e-11	57.0	sp|P08100|OPSD_HUMAN	136	23	24	0	92.31	1	0	QFRNCMLTTLCCGKNPLGDDEASTTA	QFRNCMLTTICCGKNPLGDDEASATV	4301	348	N/A	0	gi|283855845|gb|GQ290303.1|	gi|283855845|gb|GQ290303.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	1/0	9LI13TA1AV	22	1	N/A	N/A	N/A	N/A	N/A
+gi|283855822|gb|GQ290312.1|	sp|P08100|OPSD_HUMAN	95.092	326	16	0	1	978	11	336	0.0	589	sp|P08100|OPSD_HUMAN	1518	310	322	0	98.77	1	0	VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT	983	348	N/A	0	gi|283855822|gb|GQ290312.1|	gi|283855822|gb|GQ290312.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	1/0	5KA66ND4FL4TS5ML7AP49LV25ML34VI40VI6LV19VI11SASA21LI13TA1	99	33	N/A	N/A	N/A	N/A	N/A
+gi|18148870|dbj|AB062417.1|	sp|P08100|OPSD_HUMAN	93.391	348	23	0	1	1044	1	348	0.0	619	sp|P08100|OPSD_HUMAN	1596	325	337	0	96.84	1	0	MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	1047	348	N/A	0	gi|18148870|dbj|AB062417.1|	gi|18148870|dbj|AB062417.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	1/0	15KA9AY22MV38FL4TS79VA9ML10PLHKEP1TV14IT2LM1VI47LV3GS11DN14TSSA1VI17VL2LI13TA13	99	33	N/A	N/A	N/A	N/A	N/A
+gi|12583664|dbj|AB043817.1|	sp|P08100|OPSD_HUMAN	81.682	333	61	0	23	1021	1	333	0.0	532	sp|P08100|OPSD_HUMAN	1371	272	307	0	92.19	2	0	MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDG	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA	1344	348	N/A	0	gi|12583664|dbj|AB043817.1|	gi|12583664|dbj|AB043817.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	2/0	10IV1MF22AQ2AM1SA4FL2IVAL12IVEQ23FL4TS1ML3ML12IL14CS8WYMV5VMTS6SN6MAVF2TV6LA3FA20RLAK1GEIV10TVCV2ST2LMAIVI1SF4RQ2CF12EA3RK2RK6VI4SA2VI9WF8TN9SA5SA1LI3MV3CM6HN2IL2LI6FLEGEDEDDEGA	74	25	N/A	N/A	N/A	N/A	N/A
--- a/test-data/blastx_rhodopsin_vs_four_human_converted.tabular	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/blastx_rhodopsin_vs_four_human_converted.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -1,10 +1,10 @@
-gi|57163782|ref|NM_001009242.1|	sp|P08100|OPSD_HUMAN	96.55	348	12	0	1	1044	1	348	0.0	639
-gi|2734705|gb|U59921.1|BBU59921	sp|P08100|OPSD_HUMAN	85.24	332	49	0	42	1037	1	332	0.0	551
-gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	96.40	111	4	0	1	333	11	121	3e-67	220
-gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	92.31	65	5	0	3174	3368	248	312	2e-35	127
-gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	91.53	59	5	0	2855	3031	177	235	2e-33	121
-gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	93.22	59	4	0	1404	1580	119	177	1e-25	97.1
-gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	88.46	26	3	0	4222	4299	312	337	1e-12	57.0
-gi|283855822|gb|GQ290312.1|	sp|P08100|OPSD_HUMAN	95.09	326	16	0	1	978	11	336	0.0	589
-gi|18148870|dbj|AB062417.1|	sp|P08100|OPSD_HUMAN	93.39	348	23	0	1	1044	1	348	0.0	619
-gi|12583664|dbj|AB043817.1|	sp|P08100|OPSD_HUMAN	81.68	333	61	0	23	1021	1	333	0.0	532
+gi|57163782|ref|NM_001009242.1|	sp|P08100|OPSD_HUMAN	96.552	348	12	0	1	1044	1	348	0.0	639
+gi|2734705|gb|U59921.1|BBU59921	sp|P08100|OPSD_HUMAN	85.241	332	49	0	42	1037	1	332	0.0	551
+gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	96.396	111	4	0	1	333	11	121	4e-67	220
+gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	92.308	65	5	0	3174	3368	248	312	4e-35	127
+gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	91.525	59	5	0	2855	3031	177	235	4e-33	121
+gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	93.220	59	4	0	1404	1580	119	177	7e-25	97.1
+gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	88.462	26	3	0	4222	4299	312	337	1e-11	57.0
+gi|283855822|gb|GQ290312.1|	sp|P08100|OPSD_HUMAN	95.092	326	16	0	1	978	11	336	0.0	589
+gi|18148870|dbj|AB062417.1|	sp|P08100|OPSD_HUMAN	93.391	348	23	0	1	1044	1	348	0.0	619
+gi|12583664|dbj|AB043817.1|	sp|P08100|OPSD_HUMAN	81.682	333	61	0	23	1021	1	333	0.0	532
--- a/test-data/blastx_rhodopsin_vs_four_human_converted_ext.tabular	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/blastx_rhodopsin_vs_four_human_converted_ext.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -1,10 +1,10 @@
-gi|57163782|ref|NM_001009242.1|	sp|P08100|OPSD_HUMAN	96.55	348	12	0	1	1044	1	348	0.0	639	sp|P08100|OPSD_HUMAN	1647	336	343	0	98.56	1	0	MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	1047	348	Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
-gi|2734705|gb|U59921.1|BBU59921	sp|P08100|OPSD_HUMAN	85.24	332	49	0	42	1037	1	332	0.0	551	sp|P08100|OPSD_HUMAN	1419	283	315	0	94.88	3	0	MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDD	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE	1574	348	Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
-gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	96.40	111	4	0	1	333	11	121	3e-67	220	sp|P08100|OPSD_HUMAN	561	107	109	0	98.20	1	0	VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG	4301	348	Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
-gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	92.31	65	5	0	3174	3368	248	312	2e-35	127	sp|P08100|OPSD_HUMAN	319	60	64	0	98.46	3	0	KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ	KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ	4301	348	Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
-gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	91.53	59	5	0	2855	3031	177	235	2e-33	121	sp|P08100|OPSD_HUMAN	304	54	57	0	96.61	2	0	RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS	RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA	4301	348	Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
-gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	93.22	59	4	0	1404	1580	119	177	1e-25	97.1	sp|P08100|OPSD_HUMAN	240	55	56	0	94.92	3	0	LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR	LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR	4301	348	Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
-gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	88.46	26	3	0	4222	4299	312	337	1e-12	57.0	sp|P08100|OPSD_HUMAN	136	23	24	0	92.31	1	0	QFRNCMLTTLCCGKNPLGDDEASTTA	QFRNCMLTTICCGKNPLGDDEASATV	4301	348	Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
-gi|283855822|gb|GQ290312.1|	sp|P08100|OPSD_HUMAN	95.09	326	16	0	1	978	11	336	0.0	589	sp|P08100|OPSD_HUMAN	1518	310	322	0	98.77	1	0	VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT	983	348	Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
-gi|18148870|dbj|AB062417.1|	sp|P08100|OPSD_HUMAN	93.39	348	23	0	1	1044	1	348	0.0	619	sp|P08100|OPSD_HUMAN	1596	325	337	0	96.84	1	0	MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	1047	348	Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
-gi|12583664|dbj|AB043817.1|	sp|P08100|OPSD_HUMAN	81.68	333	61	0	23	1021	1	333	0.0	532	sp|P08100|OPSD_HUMAN	1371	272	307	0	92.19	2	0	MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKXXXXXXXXXXXXXXXXXXVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDG	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA	1344	348	Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
+gi|57163782|ref|NM_001009242.1|	sp|P08100|OPSD_HUMAN	96.552	348	12	0	1	1044	1	348	0.0	639	sp|P08100|OPSD_HUMAN	1647	336	343	0	98.56	1	0	MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	1047	348	sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
+gi|2734705|gb|U59921.1|BBU59921	sp|P08100|OPSD_HUMAN	85.241	332	49	0	42	1037	1	332	0.0	551	sp|P08100|OPSD_HUMAN	1419	283	315	0	94.88	3	0	MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDD	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE	1574	348	sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
+gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	96.396	111	4	0	1	333	11	121	4e-67	220	sp|P08100|OPSD_HUMAN	561	107	109	0	98.20	1	0	VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG	4301	348	sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
+gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	92.308	65	5	0	3174	3368	248	312	4e-35	127	sp|P08100|OPSD_HUMAN	319	60	64	0	98.46	3	0	KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ	KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ	4301	348	sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
+gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	91.525	59	5	0	2855	3031	177	235	4e-33	121	sp|P08100|OPSD_HUMAN	304	54	57	0	96.61	2	0	RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS	RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA	4301	348	sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
+gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	93.220	59	4	0	1404	1580	119	177	7e-25	97.1	sp|P08100|OPSD_HUMAN	240	55	56	0	94.92	3	0	LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR	LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR	4301	348	sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
+gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	88.462	26	3	0	4222	4299	312	337	1e-11	57.0	sp|P08100|OPSD_HUMAN	136	23	24	0	92.31	1	0	QFRNCMLTTLCCGKNPLGDDEASTTA	QFRNCMLTTICCGKNPLGDDEASATV	4301	348	sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
+gi|283855822|gb|GQ290312.1|	sp|P08100|OPSD_HUMAN	95.092	326	16	0	1	978	11	336	0.0	589	sp|P08100|OPSD_HUMAN	1518	310	322	0	98.77	1	0	VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT	983	348	sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
+gi|18148870|dbj|AB062417.1|	sp|P08100|OPSD_HUMAN	93.391	348	23	0	1	1044	1	348	0.0	619	sp|P08100|OPSD_HUMAN	1596	325	337	0	96.84	1	0	MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	1047	348	sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
+gi|12583664|dbj|AB043817.1|	sp|P08100|OPSD_HUMAN	81.682	333	61	0	23	1021	1	333	0.0	532	sp|P08100|OPSD_HUMAN	1371	272	307	0	92.19	2	0	MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKXXXXXXXXXXXXXXXXXXVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDG	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA	1344	348	sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
--- a/test-data/blastx_rhodopsin_vs_four_human_ext.tabular	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/blastx_rhodopsin_vs_four_human_ext.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -1,10 +1,10 @@
-gi|57163782|ref|NM_001009242.1|	sp|P08100|OPSD_HUMAN	96.55	348	12	0	1	1044	1	348	0.0	639	sp|P08100|OPSD_HUMAN	1647	336	343	0	98.56	1	0	MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	1047	348	N/A
-gi|2734705|gb|U59921.1|BBU59921	sp|P08100|OPSD_HUMAN	85.24	332	49	0	42	1037	1	332	0.0	551	sp|P08100|OPSD_HUMAN	1419	283	315	0	94.88	3	0	MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDD	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE	1574	348	N/A
-gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	96.40	111	4	0	1	333	11	121	3e-67	220	sp|P08100|OPSD_HUMAN	561	107	109	0	98.20	1	0	VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG	4301	348	N/A
-gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	92.31	65	5	0	3174	3368	248	312	2e-35	127	sp|P08100|OPSD_HUMAN	319	60	64	0	98.46	3	0	KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ	KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ	4301	348	N/A
-gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	91.53	59	5	0	2855	3031	177	235	2e-33	121	sp|P08100|OPSD_HUMAN	304	54	57	0	96.61	2	0	RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS	RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA	4301	348	N/A
-gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	93.22	59	4	0	1404	1580	119	177	1e-25	97.1	sp|P08100|OPSD_HUMAN	240	55	56	0	94.92	3	0	LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR	LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR	4301	348	N/A
-gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	88.46	26	3	0	4222	4299	312	337	1e-12	57.0	sp|P08100|OPSD_HUMAN	136	23	24	0	92.31	1	0	QFRNCMLTTLCCGKNPLGDDEASTTA	QFRNCMLTTICCGKNPLGDDEASATV	4301	348	N/A
-gi|283855822|gb|GQ290312.1|	sp|P08100|OPSD_HUMAN	95.09	326	16	0	1	978	11	336	0.0	589	sp|P08100|OPSD_HUMAN	1518	310	322	0	98.77	1	0	VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT	983	348	N/A
-gi|18148870|dbj|AB062417.1|	sp|P08100|OPSD_HUMAN	93.39	348	23	0	1	1044	1	348	0.0	619	sp|P08100|OPSD_HUMAN	1596	325	337	0	96.84	1	0	MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	1047	348	N/A
-gi|12583664|dbj|AB043817.1|	sp|P08100|OPSD_HUMAN	81.68	333	61	0	23	1021	1	333	0.0	532	sp|P08100|OPSD_HUMAN	1371	272	307	0	92.19	2	0	MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDG	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA	1344	348	N/A
+gi|57163782|ref|NM_001009242.1|	sp|P08100|OPSD_HUMAN	96.552	348	12	0	1	1044	1	348	0.0	639	sp|P08100|OPSD_HUMAN	1647	336	343	0	98.56	1	0	MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	1047	348	N/A
+gi|2734705|gb|U59921.1|BBU59921	sp|P08100|OPSD_HUMAN	85.241	332	49	0	42	1037	1	332	0.0	551	sp|P08100|OPSD_HUMAN	1419	283	315	0	94.88	3	0	MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDD	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE	1574	348	N/A
+gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	96.396	111	4	0	1	333	11	121	3.78e-67	220	sp|P08100|OPSD_HUMAN	561	107	109	0	98.20	1	0	VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG	4301	348	N/A
+gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	92.308	65	5	0	3174	3368	248	312	4.13e-35	127	sp|P08100|OPSD_HUMAN	319	60	64	0	98.46	3	0	KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ	KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ	4301	348	N/A
+gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	91.525	59	5	0	2855	3031	177	235	3.99e-33	121	sp|P08100|OPSD_HUMAN	304	54	57	0	96.61	2	0	RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS	RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA	4301	348	N/A
+gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	93.220	59	4	0	1404	1580	119	177	7.46e-25	97.1	sp|P08100|OPSD_HUMAN	240	55	56	0	94.92	3	0	LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR	LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR	4301	348	N/A
+gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	88.462	26	3	0	4222	4299	312	337	1.13e-11	57.0	sp|P08100|OPSD_HUMAN	136	23	24	0	92.31	1	0	QFRNCMLTTLCCGKNPLGDDEASTTA	QFRNCMLTTICCGKNPLGDDEASATV	4301	348	N/A
+gi|283855822|gb|GQ290312.1|	sp|P08100|OPSD_HUMAN	95.092	326	16	0	1	978	11	336	0.0	589	sp|P08100|OPSD_HUMAN	1518	310	322	0	98.77	1	0	VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT	983	348	N/A
+gi|18148870|dbj|AB062417.1|	sp|P08100|OPSD_HUMAN	93.391	348	23	0	1	1044	1	348	0.0	619	sp|P08100|OPSD_HUMAN	1596	325	337	0	96.84	1	0	MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	1047	348	N/A
+gi|12583664|dbj|AB043817.1|	sp|P08100|OPSD_HUMAN	81.682	333	61	0	23	1021	1	333	0.0	532	sp|P08100|OPSD_HUMAN	1371	272	307	0	92.19	2	0	MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDG	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA	1344	348	N/A
--- a/test-data/blastx_sample_converted.tabular	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/blastx_sample_converted.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -1,33 +1,33 @@
-phage_suis	gi|119953746|ref|YP_950551.1|	100.00	518	0	0	336	1889	25	542	0.0	988
-phage_suis	gi|289551554|ref|YP_003472458.1|	32.95	516	280	6	342	1889	657	1106	6e-66	256
-phage_suis	gi|223044325|ref|ZP_03614360.1|	30.22	546	327	7	393	1889	655	1193	1e-64	252
-phage_suis	gi|223044325|ref|ZP_03614360.1|	19.88	508	328	9	384	1796	844	1309	6e-28	130
-phage_suis	gi|268611153|ref|ZP_06144880.1|	28.64	639	371	11	78	1847	440	1042	1e-60	239
-phage_suis	gi|268611153|ref|ZP_06144880.1|	23.36	441	286	7	543	1856	547	938	4e-31	141
-phage_suis	gi|268611153|ref|ZP_06144880.1|	25.27	459	266	11	522	1844	722	1121	8e-31	140
-phage_suis	gi|268611153|ref|ZP_06144880.1|	24.63	406	267	8	501	1694	770	1144	3e-23	115
-phage_suis	gi|268611153|ref|ZP_06144880.1|	27.80	241	145	3	492	1148	811	1044	6e-16	90.9
-phage_suis	gi|268611153|ref|ZP_06144880.1|	19.76	253	168	6	1158	1883	547	775	3e-04	52.0
-phage_suis	gi|268610688|ref|ZP_06144415.1|	28.95	639	369	11	78	1847	440	1042	3e-59	234
-phage_suis	gi|268610688|ref|ZP_06144415.1|	24.64	491	316	9	501	1856	770	1245	4e-39	167
-phage_suis	gi|268610688|ref|ZP_06144415.1|	23.79	517	319	9	492	1832	811	1322	3e-37	161
-phage_suis	gi|268610688|ref|ZP_06144415.1|	21.91	493	322	11	510	1859	905	1377	1e-25	123
-phage_suis	gi|268610688|ref|ZP_06144415.1|	20.55	292	197	5	486	1343	1138	1400	4e-10	71.6
-phage_suis	gi|268610688|ref|ZP_06144415.1|	21.41	341	225	10	894	1883	467	775	8e-05	53.9
-phage_suis	gi|153811333|ref|ZP_01964001.1|	28.34	621	364	16	108	1847	493	1073	8e-55	219
-phage_suis	gi|153811333|ref|ZP_01964001.1|	29.67	428	250	9	519	1760	709	1099	2e-47	195
-phage_suis	gi|153811333|ref|ZP_01964001.1|	29.41	391	226	7	498	1640	746	1096	1e-39	169
-phage_suis	gi|153811333|ref|ZP_01964001.1|	26.49	268	174	3	492	1256	854	1111	3e-24	118
-phage_suis	gi|153811333|ref|ZP_01964001.1|	27.12	306	198	4	510	1385	816	1110	1e-23	116
-phage_suis	gi|262113750|emb|CAR95417.1|	38.46	286	169	1	384	1241	540	818	2e-54	218
-phage_suis	gi|262113750|emb|CAR95417.1|	29.68	411	271	7	657	1871	460	858	3e-40	171
-phage_suis	gi|77411259|ref|ZP_00787609.1|	37.19	285	172	1	387	1241	628	905	2e-53	215
-phage_suis	gi|77411259|ref|ZP_00787609.1|	28.01	407	281	6	660	1871	548	945	1e-40	172
-phage_suis	gi|77411259|ref|ZP_00787609.1|	22.82	355	207	7	978	1877	540	882	9e-14	83.6
-phage_suis	gi|76786754|ref|YP_329383.1|	36.84	285	173	1	387	1241	628	905	8e-53	213
-phage_suis	gi|76786754|ref|YP_329383.1|	27.27	407	284	6	660	1871	548	945	3e-38	164
-phage_suis	gi|76786754|ref|YP_329383.1|	24.73	283	194	2	543	1391	637	900	3e-23	115
-phage_suis	gi|76786754|ref|YP_329383.1|	22.91	323	204	6	978	1847	540	850	2e-13	82.4
-phage_suis	gi|50914476|ref|YP_060448.1|	35.86	290	179	1	372	1241	623	905	4e-51	207
-phage_suis	gi|50914476|ref|YP_060448.1|	27.01	411	280	7	660	1871	548	945	2e-35	155
-phage_suis	gi|50914476|ref|YP_060448.1|	23.00	387	269	5	543	1673	637	1004	3e-25	121
+phage_suis	gi|119953746|ref|YP_950551.1|	100.000	518	0	0	336	1889	25	542	0.0	988
+phage_suis	gi|289551554|ref|YP_003472458.1|	32.946	516	280	6	342	1889	657	1106	6e-66	256
+phage_suis	gi|223044325|ref|ZP_03614360.1|	30.220	546	327	7	393	1889	655	1193	1e-64	252
+phage_suis	gi|223044325|ref|ZP_03614360.1|	19.882	508	328	9	384	1796	844	1309	6e-28	130
+phage_suis	gi|268611153|ref|ZP_06144880.1|	28.638	639	371	11	78	1847	440	1042	1e-60	239
+phage_suis	gi|268611153|ref|ZP_06144880.1|	23.356	441	286	7	543	1856	547	938	4e-31	141
+phage_suis	gi|268611153|ref|ZP_06144880.1|	25.272	459	266	11	522	1844	722	1121	8e-31	140
+phage_suis	gi|268611153|ref|ZP_06144880.1|	24.631	406	267	8	501	1694	770	1144	3e-23	115
+phage_suis	gi|268611153|ref|ZP_06144880.1|	27.801	241	145	3	492	1148	811	1044	6e-16	90.9
+phage_suis	gi|268611153|ref|ZP_06144880.1|	19.763	253	168	6	1158	1883	547	775	3e-04	52.0
+phage_suis	gi|268610688|ref|ZP_06144415.1|	28.951	639	369	11	78	1847	440	1042	3e-59	234
+phage_suis	gi|268610688|ref|ZP_06144415.1|	24.644	491	316	9	501	1856	770	1245	4e-39	167
+phage_suis	gi|268610688|ref|ZP_06144415.1|	23.791	517	319	9	492	1832	811	1322	3e-37	161
+phage_suis	gi|268610688|ref|ZP_06144415.1|	21.907	493	322	11	510	1859	905	1377	1e-25	123
+phage_suis	gi|268610688|ref|ZP_06144415.1|	20.548	292	197	5	486	1343	1138	1400	4e-10	71.6
+phage_suis	gi|268610688|ref|ZP_06144415.1|	21.408	341	225	10	894	1883	467	775	8e-05	53.9
+phage_suis	gi|153811333|ref|ZP_01964001.1|	28.341	621	364	16	108	1847	493	1073	8e-55	219
+phage_suis	gi|153811333|ref|ZP_01964001.1|	29.673	428	250	9	519	1760	709	1099	2e-47	195
+phage_suis	gi|153811333|ref|ZP_01964001.1|	29.412	391	226	7	498	1640	746	1096	1e-39	169
+phage_suis	gi|153811333|ref|ZP_01964001.1|	26.493	268	174	3	492	1256	854	1111	3e-24	118
+phage_suis	gi|153811333|ref|ZP_01964001.1|	27.124	306	198	4	510	1385	816	1110	1e-23	116
+phage_suis	gi|262113750|emb|CAR95417.1|	38.462	286	169	1	384	1241	540	818	2e-54	218
+phage_suis	gi|262113750|emb|CAR95417.1|	29.684	411	271	7	657	1871	460	858	3e-40	171
+phage_suis	gi|77411259|ref|ZP_00787609.1|	37.193	285	172	1	387	1241	628	905	2e-53	215
+phage_suis	gi|77411259|ref|ZP_00787609.1|	28.010	407	281	6	660	1871	548	945	1e-40	172
+phage_suis	gi|77411259|ref|ZP_00787609.1|	22.817	355	207	7	978	1877	540	882	9e-14	83.6
+phage_suis	gi|76786754|ref|YP_329383.1|	36.842	285	173	1	387	1241	628	905	8e-53	213
+phage_suis	gi|76786754|ref|YP_329383.1|	27.273	407	284	6	660	1871	548	945	3e-38	164
+phage_suis	gi|76786754|ref|YP_329383.1|	24.735	283	194	2	543	1391	637	900	3e-23	115
+phage_suis	gi|76786754|ref|YP_329383.1|	22.910	323	204	6	978	1847	540	850	2e-13	82.4
+phage_suis	gi|50914476|ref|YP_060448.1|	35.862	290	179	1	372	1241	623	905	4e-51	207
+phage_suis	gi|50914476|ref|YP_060448.1|	27.007	411	280	7	660	1871	548	945	2e-35	155
+phage_suis	gi|50914476|ref|YP_060448.1|	22.997	387	269	5	543	1673	637	1004	3e-25	121
Binary file test-data/cd00003_and_cd00008.pin has changed
--- a/test-data/four_human_proteins.dbinfo.txt	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/four_human_proteins.dbinfo.txt	Wed Apr 19 05:27:19 2017 -0400
@@ -1,7 +1,7 @@
 Database: Just 4 human proteins
 	4 sequences; 3,297 total residues
 
-Date: Jul 4, 2015  3:35 PM	Longest sequence: 1,382 residues
+Date: Dec 2, 2016  10:38 AM	Longest sequence: 1,382 residues
 
 Volumes:
-	/mnt/galaxy/repositories/galaxy_blast/test-data/four_human_proteins_taxid.fasta
+	/mnt/shared/users/pc40583/repositories/galaxy_blast/test-data/four_human_proteins_taxid.fasta
--- a/test-data/four_human_proteins.fasta.log.txt	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/four_human_proteins.fasta.log.txt	Wed Apr 19 05:27:19 2017 -0400
@@ -1,5 +1,2 @@
 New DB title:  Just 4 human proteins
 Sequence type: Protein
-Keep Linkouts: T
-Keep MBits: T
-Maximum file size: 1000000000B
Binary file test-data/four_human_proteins.fasta.pin has changed
--- a/test-data/four_human_proteins_taxid.fasta.log.txt	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/four_human_proteins_taxid.fasta.log.txt	Wed Apr 19 05:27:19 2017 -0400
@@ -1,5 +1,2 @@
 New DB title:  Just 4 human proteins
 Sequence type: Protein
-Keep Linkouts: T
-Keep MBits: T
-Maximum file size: 1000000000B
Binary file test-data/four_human_proteins_taxid.fasta.pin has changed
--- a/test-data/rhodopsin_bufo.fasta	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/rhodopsin_bufo.fasta	Wed Apr 19 05:27:19 2017 -0400
@@ -1,4 +1,4 @@
->gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds
+>U59921.1 Bufo bufo rhodopsin mRNA, complete cds
 TCTTTCTAGTTTGGGGGGGGGGACTTTAAAGAGCCGCCAATATGAACGGAACAGAAGGCCCAAACTTTTACATACCCATG
 TCCAACAAGACTGGGGTGGTGCGAAGCCCCTTTGAATACCCTCAGTATTACCTGGCAGAGCCATGGCAATATTCCATTCT
 GTGCGCGTACATGTTCCTGCTCATTCTACTTGGGTTCCCAATCAACTTCATGACCTTGTACGTCACCATCCAGCACAAGA
--- a/test-data/rhodopsin_nucs.dbinfo.txt	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/rhodopsin_nucs.dbinfo.txt	Wed Apr 19 05:27:19 2017 -0400
@@ -1,7 +1,7 @@
 Database: Rhodopsin nucleotides
 	6 sequences; 10,296 total bases
 
-Date: Oct 14, 2016  2:16 PM	Longest sequence: 4,301 bases
+Date: Dec 2, 2016  10:38 AM	Longest sequence: 4,301 bases
 
 Volumes:
-	/mnt/galaxy/repositories/galaxy_blast/test-data/rhodopsin_nucs.fasta
+	/mnt/shared/users/pc40583/repositories/galaxy_blast/test-data/rhodopsin_nucs.fasta
--- a/test-data/rhodopsin_nucs.fasta.log.txt	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/rhodopsin_nucs.fasta.log.txt	Wed Apr 19 05:27:19 2017 -0400
@@ -1,5 +1,2 @@
 New DB title:  Rhodopsin nucleotides
 Sequence type: Nucleotide
-Keep Linkouts: T
-Keep MBits: T
-Maximum file size: 1000000000B
Binary file test-data/rhodopsin_nucs.fasta.nin has changed
Binary file test-data/rhodopsin_nucs.fasta.nsq has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/rhodopsin_nucs.no_gi.fasta	Wed Apr 19 05:27:19 2017 -0400
@@ -0,0 +1,138 @@
+>NM_001009242.1 Felis catus rhodopsin (RHO), mRNA
+ATGAACGGGACGGAGGGCCCGAACTTCTACGTGCCCTTCTCCAACAAAACGGGTGTGGTACGCAGCCCCTTCGAGTACCC
+ACAGTACTACCTGGCTGAGCCATGGCAGTTCTCCATGCTGGCCGCCTACATGTTCCTGCTCATCGTGCTTGGCTTCCCCA
+TCAACTTCCTCACGCTCTACGTCACGGTCCAGCACAAGAAGCTGCGCACGCCTCTCAACTACATCCTGCTCAACCTGGCC
+GTGGCTGACCTCTTCATGGTCTTCGGTGGCTTCACCACCACCCTCTACACCTCTCTGCATGGATACTTTGTCTTTGGGCC
+CACAGGATGCAATTTGGAGGGCTTCTTTGCCACACTGGGCGGTGAAATTGCCCTGTGGTCTTTGGTGGTCCTGGCCATTG
+AGCGGTACGTGGTGGTGTGTAAGCCCATGAGCAACTTCCGCTTTGGGGAGAACCATGCCATAATGGGCGTCGCTTTCACC
+TGGGTCATGGCACTGGCCTGCGCTGCACCCCCCCTCGTTGGTTGGTCCAGGTACATCCCTGAAGGCATGCAGTGTTCATG
+CGGGATCGACTACTACACACTCAAGCCAGAAGTCAACAACGAGTCCTTTGTCATCTACATGTTCGTGGTCCACTTCACCA
+TCCCCATGATCGTCATCTTCTTTTGCTACGGGCAGCTTGTCTTCACAGTCAAGGAGGCGGCAGCCCAGCAGCAGGAGTCA
+GCCACCACCCAGAAGGCTGAGAAGGAGGTCACTCGCATGGTCATCATCATGGTCATTGCTTTCCTGATCTGTTGGGTGCC
+CTACGCCAGCGTGGCATTCTACATCTTCACCCACCAGGGGTCCAACTTTGGCCCCATCTTCATGACACTCCCGGCGTTCT
+TCGCAAAGTCCTCCTCCATCTACAACCCTGTCATCTACATCATGATGAACAAGCAGTTCCGGAACTGCATGCTCACTACC
+CTCTGCTGTGGCAAGAACCCACTGGGTGATGACGAGGCTTCCACAACCGGTTCCAAGACGGAGACCAGCCAGGTGGCACC
+GGCCTAA
+>U59921.1 Bufo bufo rhodopsin mRNA, complete cds
+TCTTTCTAGTTTGGGGGGGGGGACTTTAAAGAGCCGCCAATATGAACGGAACAGAAGGCCCAAACTTTTACATACCCATG
+TCCAACAAGACTGGGGTGGTGCGAAGCCCCTTTGAATACCCTCAGTATTACCTGGCAGAGCCATGGCAATATTCCATTCT
+GTGCGCGTACATGTTCCTGCTCATTCTACTTGGGTTCCCAATCAACTTCATGACCTTGTACGTCACCATCCAGCACAAGA
+AGCTCCGGACACCCTTAAACTATATCCTGCTGAATTTGGCCTTTGCCAACCACTTCATGGTCCTGTGTGGATTCACGGTG
+ACAATGTACTCCTCAATGAACGGATACTTCATCCTCGGAGCCACCGGTTGCTATGTTGAAGGCTTCTTCGCTACCCTTGG
+TGGTGAAATCGCCCTTTGGTCCCTGGTGGTCTTGGCCATTGAACGATACGTGGTCGTCTGTAAGCCCATGAGCAACTTCC
+GATTTAGTGAGAACCATGCCGTCATGGGCGTAGCGTTCACCTGGATAATGGCTTTGTCCTGTGCTGTTCCTCCACTCCTT
+GGATGGTCCAGGTACATCCCCGAGGGCATGCAGTGCTCCTGCGGAGTCGACTACTACACCCTGAAGCCCGAGGTCAACAA
+CGAGTCCTTCGTCATCTACATGTTCGTCGTCCACTTCACCATCCCCCTGATTATCATTTTCTTCTGCTATGGCCGCCTGG
+TGTGCACTGTGAAAGAGGCTGCAGCTCAACAGCAAGAGTCCGCCACCACCCAGAAGGCCGAGAAAGAGGTGACCAGGATG
+GTGATCATCATGGTGGTCTTCTTCCTTATCTGTTGGGTCCCCTACGCCTCTGTCGCTTTCTTCATCTTCAGCAATCAGGG
+CTCTGAGTTCGGCCCCATCTTCATGACCGTCCCAGCTTTCTTTGCCAAGAGTTCTTCCATCTACAACCCCGTCATCTACA
+TCATGCTCAACAAGCAGTTCCGTAACTGCATGATCACCACCCTGTGCTGCGGCAAGAATCCCTTTGGAGAAGACGATGCC
+TCCTCTGCCGCCACCTCCAAGACAGAGGCTTCTTCTGTTTCTTCCAGCCAGGTGTCTCCTGCATAAGACCTTCCACCAGG
+CCTGTCTCAGGGTCCGCTGCCTCACACAGCTCCCACCGCCCCAACTCCGTCTCCTGCTCGCTAAGGCGGCGAAGTTCCCC
+TTCCATTACATAAAACGTATCTGTTCAAGAAAGGCGACGACGAAGGAGAAGAAGAGGAGCCCCCCCGAACCCCTTCGCTG
+CTGCTGAAAACGACTTGATTGCTTCTGCAACGCAACGGGGCCTTACGGCAGCGAAGGGGTTGTCATCCGGACGCGCCAAG
+AATTCCTTCGAGACTGTAAATATCTTAAAGGAACCGTCCTGCTAGTTACCGACGCCGCTCCTGTAGCCGCCGTTCCCCCG
+CACTCCGGCCGGTTCATACCTCTTATTTTTTTGCAATGCAACAGAAAATAATATTTTTGTTCCCACGGCTTTTCCCGGTC
+AGGTCTGGTAGTGGCGGAGATTGGCCGACCCCTCGCACCTGTAATAAAGCGCAG
+>GQ290303.1 Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds
+GTGCCCTTCTCCAACAAGACAGGCGTGGTGCGCAGTCCCTTCGAGCATCCACAGTACTACCTGGCCGAGCCATGGCAGTT
+CTCCATGCTGGCCGCCTACATGTTTCTGCTGATCGTGCTCGGCTTCCCCATCAACTTCCTCACGCTCTATGTCACGGTTC
+AGCACAAGAAGCTGCGTACGCCTCTCAACTACATCCTGCTCAACCTGGCCGTGGCCGACCTCTTCATGGTCTTCGGAGGC
+TTCACCACCACCCTCTACACCTCCCTGCATGGATACTTTGTCTTCGGGCCTACGGGATGCAATCTGGAGGGCTTTTTTGC
+CACCCTGGGAGGTATGAGCTGAGATGCGGGTAAGGAGGAGGCATAGAGGCATCTGGGAACAGTCCCAAGCTTGGGGTGAA
+GGCTAAGAGGCCTTCTTCCTTGTTCTGTCATTGGCGTCGTCCGAAGCCCTCACTTAATCAACAAACAGTTTGGTGGTGAG
+GCGCTGAGCTCCATTTGGAGAGGGCAGGTATCGAGCACTGTTTTATCCCCCCTGGAGTGGTGCCATTGCCTTGCTTTACA
+GCAAAGAAACTGAGGATGAGAGGAGTCGAGGGTCTTGCCAGGTCACATCATGGCAGAGACAGAGCTGAGTTTCAACCCTG
+CATCTATGTGCAGTTTCCCTTGGAGCAGCTATGTTAGGTCAGACCCACGGTGGGCACTGGGGAGAGAGCTGCACAAGACA
+GGTCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
+NNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCTGATTGCCAGGAGTGATGTGCAGCGCAAATGTCTGAATTCCATTATTAT
+GTGCTCCTTCTTCCTCTGAGCCAAACATCCATCTTCATGGCTCCTAGAATTGGGTCCCACCCACATGAGCAGGTCATTTT
+GTTTCCCTAGAGGGGAGAGGTCACTGCTGTGGAGGGAGGGAAGGTTCGTCCCGCTCCATGTTTCTGTTGTCTCTGCAATG
+CCTTTCTCTAGGGACTCTGCCTATTGCCCCAAGAAGGACACATTCTTCTGTAAAAACTCCCTCCTGGGTTCCCAGTCTAA
+TCAAGACCTCTAAACTGATTTCCATGTCCCTCATGAACCCAAAGCTCTAACTGAATTAAACTTCTCAGGACTTACTCCAC
+TCTCCTCGTCCATCATGCAGCCCCTCTGCCCAGCACCCTATCTCCTCTTCTTCCCAGTGTCTGAGCCCACTGTACCCTGA
+GACTTCGCTCCAGGCCTGCCCCAGGCTGCCTTCTCAGGTGCCCTCTCCCACATAGGAGGAGCACGGCCTCCTTAGACAGA
+CGTGGGGTGCAGGTTGGTGGCATGCTGACTGATAGCTGACTGCCTTGCAGGTGAAATTGCCCTGTGGTCCTTGGTGGTCC
+TGGCCATCGAGCGGTACGTGGTGGTATGCAAGCCCATGAGCAACTTCCGCTTCGGGGAGAACCACGCCATCATGGGCCTT
+GCCCTCACCTGGGTCATGGCACTGGCCTGCGCCGCGCCCCCGCTAGTCGGCTGGTCCAGGTAATGGCACTGAACAGAAGG
+GAAGTGCCTCTGAGGTCTTCTTAGGGTCCCCCAGCTGGGACTCAAACCTAGGGCTGTCTGGTTCCAGGCACGGAACTGGC
+GACTCCACTGGGGTTGGGGTTTAGGGCAAGGAAGGAGAGGATCAGACCCTAATGTTGTTACGTGGGTTGGTCCGCATGTC
+AAGGAGAATCCAAGACACCCAATCCTTCACCTTGGCTGTGCCCCTAATCCTCATCTAAGCCAGGTTCAGATTCCAATCCT
+CTTTGGCCCAGTGCTCCGTGGGAAGCTCCCTCTGACCTTGGGCCTCAGCGCCTGGGGTTGCTGAGCCTTCCTAGTATAGG
+TGGTGACATCGTAGCCCCTGGGACCTGGATCCTGCCCAGTCTGCAGGCCATCATCTCCAAATGGGGCTGAGATGAGATGT
+GAGGAAAGAGGGGAGACAGTGGTTTGGAAAACTGGACTGGTGGCTTTTTTGGGTTTCCAGAGGACTCATCTTCCTCTGCT
+TCTAGAATATTCCCACTCTCTCTTCCCTTTCCTCATTCTTCCTGGGTTATTTTTTTTTCCCTTTGCTGAATTCGAGCCCC
+ATTCCCTCCAGCCTCTTTCCCTGTCTTATCTAGCCCAGTCCAGTTATATTCTCATAGGCAGAGGCAACAGATGCTCCAAA
+TTTTCTGAGGTCGGTTCCAACATCGCCACCCTCTAAAATCAGTGAAACATCCTAACTACATGCCTCATAGTCCTCCTGTT
+TCCAAAAACTGCAAAGATCTCCTGGTTACCCTGTATGCCCATCTTTGGGCTAGAAAATCCTCTCACCCTGTTAATAGTAA
+GACCCTGGTTTGTACAAACTGCCTCAAACACAGAGTTTAGGGGCTTTTCCCTTCTCTCCGCCAACCTCTGACAGGCAGAG
+TCTGAGGCCTGGCCTCCAGCTGCTGCGGGGAGCAGGTCTGGTAAAGAATCCTGTGCAGGTCAGTGGTATACAGGTCCTGT
+CAGGTGACAGCCTGGGCGAGAGACTGGAAAGTATCAGGATAACACGGCTGCCAGACGAACAACAAAACAACACTGAATTC
+ACAAGGCGCATTCGAATCCTCTCTCAGTCCATTTGATCCTCAGTCACACAGCCGAGTAGACACTTTATCAACTCATTTAA
+CAGAAAGGGAAAGTGAAGCCCAGAGCGAGGCCAGCAACGTGGCAGGTCACTCTGGTCATCTAGGGCCTGTTCCCAACTCT
+TTCACATGTGGGTCTCCAATATGTTCCCTCCTGTCCCAATCTCTGCCGGCCCTCAGGTACATCCCAGAGGGCATGCAGTG
+CTCATGTGGAATCGACTACTACACCCTCAAGCCGGAGGTCAACAACGAGTCCTTTGTCATCTACATGTTCGTGGTCCACT
+TCACCATCCCTATGATTGTCATATTCTTTTGCTATGGACAGCTGGTCTTCACCGTCAAGGAGGTAAGGTCATGTGTTGGG
+CACTGGGGACATGCACACTGAGTGAATGGAGCCCAGCTCCATTCCCAGAGTTGCCACAGTCTGGACACCTGACCTTGTGT
+CCCTGCAGGCAGCTGCCCAGCAGCAGGAGTCAGCCACCACCCAGAAGGCCGAGAAGGAGGTCACCCGTATGGTCATCATC
+ATGGTCATTGCTTTCCTAATCTGTTGGCTGCCGTATGCCGGCGTGGCATTCTACATCTTCACCCACCAGGGCTCTAACTT
+TGGCCCCATCTTCATGACCCTCCCGGCATTCTTTGCCAAGTCGTCCTCCATCTACAACCCTGTCATCTATATCATGATGA
+ACAAGCAGGTGCCAGGTGGTAGGGAGGGAGGGTCTGGGTCCCCCAGGCTGCAGGCACTGCCCACAGAGGACAAGCCACAT
+CCTTGACTAGGCAGACCCCAGTCTTCCCATCTGCAAAATTAGGCAGGGGAGTTCGTCTCCCCCAGGCATCAGAGACATCG
+GGGAGAAATGCACATTTCTGGAGATGAATCAGCATCTCAGGGTGGGCCCAGGAACCTGCACTTCTAAAAACCATTCCACA
+TGACTCTGAGGCTAGCATGAGAAGTGATGATCCACATGGTTCTGGAGGCCTGCTTTAAAAGTCAAGTGGTCAAAGTCCCA
+AGCCTGGGAACGGGATGGTGCCAGTCTCCATTAAAGAGATCAAAAGGAGCTAGAAAGTCTTGTGATGAAAGATGAAGGGA
+TAAAGCCGTCCTTTAACACAGATCAGTGATTTCTCTGCAGAATCCATGACCCAGTGGGAAAAAGTGGTCCCTGGAGTCAG
+GCATATTGGATTCAAATCCTAGCTCTGCTATTTTCTAGCTATGTAACCTTGGGCAAGTCATCTCCCTTCTCTGTGCTTCA
+GTTTCTTCTTTCATAGAAAGGGTAAAATCCCAAACTCTTGGGTTAAATGAGATAACTTACATAGCCCTTGATATGCAGAG
+GCATTATGGAATGTCGTTAGTGACAAAGTTCCCTTGGGTTTGGTCCCTGGTATCTCTGGAGTGAGATTGCATATGTTCCC
+TTCAGAGGGTCAGATTTGGGATGAGAGTGGAGGCTGCGAGGGCCTGAGTGGGAAGGGATTGGAGGCAAATCTCACCAACC
+ATGTCAGTTTGCTACACACACTTTGGGTGGACCCTGACCCTGACTCATGCTTCTTGCCTTCCAGTTCCGGAACTGCATGC
+TCACTACCCTCTGCTGTGGCAAGAACCCACTGGGTGACGATGAGGCCTCCACCACTGCCTC
+>GQ290312.1 Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds
+GTGCCCTTCTCCAACAAGACGGGTGTGGTGCGCAGCCCCTTCGAGTACCCGCAGTACTACCTGGCTGAGCCCTGGCAGTT
+CTCCATGCTGGCTGCCTACATGTTTCTGCTGATCGTGCTCGGATTCCCCATCAACTTCCTCACGCTCTACGTCACCGTCC
+AGCACAAGAAGCTGCGCACGCCTCTCAACTACATCCTGCTCAACCTGGCTGTGGCCAACCTCTTCATGGTCTTTGGAGGC
+TTCACCACCACCCTGTATACCTCTATGCATGGATACTTCGTCTTCGGGGCCACGGGATGCAATCTGGAGGGCTTCTTTGC
+CACGCTGGGCGGTGAAATCGCCCTGTGGTCCCTGGTGGTCCTGGCCATCGAGCGGTATGTGGTGGTCTGCAAGCCCATGA
+GCAACTTCCGCTTTGGGGAGAACCACGCCATCATGGGCCTCGCCTTCACGTGGGTCATGGCACTGGCCTGCGCTGCACCC
+CCACTAGCCGGCTGGTCCAGGTACATCCCAGAGGGCATGCAGTGCTCGTGTGGGATTGACTACTACACGCTCAAACCGGA
+GGTCAACAACGAGTCCTTCGTCATCTACATGTTCGTGGTCCACTTCACCATCCCCATGATTGTCATTTTCTTCTGCTACG
+GACAGCTGGTGTTCACAGTGAAGGAGGCGGCTGCCCAGCAGCAGGAGTCAGCCACCACCCAGAAGGCCGAGAAGGAAGTC
+ACGCGCATGGTCATCATCATGGTCGTTGCGTTCCTAATCTGTTGGCTGCCCTACGCCAGCGTGGCATTCTACATCTTTAC
+CCACCAGGGCTCTAACTTTGGCCCTGTCTTCATGACCATCCCGGCATTCTTCGCCAAGTCATCCTCCATCTACAACCCGG
+TCATCTATATCATGATGAACAAGCAGTTCCGGAACTGCATGCTCACCACCCTCTGCTGTGGCAAGAACCCACTGGGTGAT
+GACGAAGCATCCACCACTGCCTC
+>AB062417.1 Synthetic construct Bos taurus gene for rhodopsin, complete cds
+ATGAACGGGACCGAGGGCCCAAACTTCTACGTGCCTTTCTCCAACAAGACGGGCGTCGTACGCAGCCCCTTCGAGGCGCC
+GCAGTACTACCTGGCTGAGCCATGGCAGTTCAGCATGCTGGCCGCCTACATGTTCCTGCTGATCATGCTTGGCTTCCCCA
+TCAACTTCCTCACGCTGTACGTCACAGTCCAGCACAAGAAGCTGAGGACCCCCCTCAACTACATCCTGCTCAACCTGGCC
+GTGGCAGATCTCTTCATGGTGTTCGGGGGCTTCACCACCACCCTGTATACCTCTCTGCACGGGTACTTCGTGTTCGGTCC
+GACGGGCTGCAACCTCGAGGGCTTCTTTGCCACCTTAGGCGGTGAAATTGCACTGTGGTCCTTGGTGGTGCTAGCCATCG
+AGCGGTACGTAGTGGTGTGCAAGCCCATGAGCAACTTCCGCTTCGGGGAGAACCACGCCATCATGGGCGTCGCATTCACC
+TGGGTCATGGCTCTGGCCTGTGCGGCCCCCCCCCTCGTCGGCTGGTCTAGATACATCCCGGAGGGGATGCAGTGCTCGTG
+CGGGATCGATTACTACACGCCCCACGAGGAGACCAACAATGAGTCGTTCGTCATCTACATGTTCGTTGTACACTTCATCA
+TCCCCCTGATTGTCATATTCTTCTGCTACGGGCAGCTGGTCTTCACCGTCAAGGAGGCTGCAGCCCAGCAGCAGGAGTCG
+GCCACCACTCAGAAGGCCGAGAAGGAGGTCACGCGTATGGTCATCATCATGGTCATCGCTTTCCTCATATGCTGGCTGCC
+CTACGCAGGTGTGGCGTTCTACATCTTCACCCATCAGGGATCCGACTTTGGCCCCATCTTCATGACCATCCCGGCTTTCT
+TTGCCAAGACGTCTGCCGTCTATAACCCCGTCATCTACATCATGATGAACAAGCAGTTCCGGAACTGCATGGTCACCACT
+CTCTGCTGTGGCAAGAACCCCCTAGGTGACGACGAGGCCTCCACGACCGTGTCCAAGACAGAGACCAGCCAAGTGGCCCC
+TGCCTAA
+>AB043817.1 Conger myriaster conf gene for fresh water form rod opsin, complete cds
+CCGCTACTGACGAACCGCAACCATGAACGGCACTGAGGGACCTAACTTCTACATCCCCATGTCAAACGCCACTGGTGTAG
+TGAGGAGTCCATTTGAATACCCGCAGTACTACCTTGCAGAACCATGGGCTTTCTCAGCTCTGTCTGCCTACATGTTCTTC
+CTGATTATCGCCGGATTCCCCATCAACTTCCTCACCCTGTATGTCACCATCGAACATAAGAAACTGAGGACCCCACTGAA
+CTACATTCTGCTGAACCTGGCCGTGGCCGACCTCTTCATGGTGTTTGGCGGATTCACCACCACGATGTACACCTCCATGC
+ACGGCTACTTTGTCTTCGGCCCCACCGGCTGCAACATCGAAGGGTTCTTCGCCACCCTCGGCGGCGAGATTGCCCTCTGG
+TGCCTCGTTGTCCTGGCCATTGAAAGGTGGATGGTCGTCTGCAAGCCAGTGACCAATTTCCGCTTCGGTGAGAGCCATGC
+CATCATGGGTGTCATGGTGACCTGGACCATGGCATTGGCCTGTGCCCTCCCCCCTCTCTTCGGCTGGTCTCGGTACATTC
+CGGAAGGTCTGCAGTGCTCGTGCGGGATCGACTACTATACCCGGGCGCCTGGGATCAACAATGAGTCCTTTGTGATCTAC
+ATGTTTACCTGCCACTTCTCCATCCCACTCGCCGTCATCTCTTTCTGCTACGGCCGACTGGTGTGCACCGTCAAAGAGGC
+CGCTGCCCAGCAACAGGAGTCCGAGACCACCCAGAGGGCTGAGCGGGAGGTCACCCGCATGGTCGTCATCATGGTCATCT
+CCTTCCTGGTCTGCTGGGTGCCCTATGCCAGTGTGGCCTGGTACATCTTTACCCACCAGGGAAGCACTTTTGGGCCCATC
+TTCATGACCATTCCATCCTTCTTTGCCAAGAGTTCAGCCCTCTACAACCCCATGATCTACATCTGCATGAACAAGCAGTT
+CCGCCATTGCATGATCACCACCCTCTGCTGTGGGAAGAACCCCTTCGAGGAGGAGGATGGAGCGTCCGCCACTAGCTCTA
+AAACTGAGGCTTCATCCGTGTCCTCCAGCTCTGTCTCCCCGGCATAAACCTTGTTTGACCGAACACCACGCATCAACACA
+AAGACCAAGAATGCTGACTAAATGCTAACATTTCAGGGAAATCCAAAGACTTTTTACTATTTTTTTACACAACCATATAG
+GTTGCAAACAGAGGTTTAGCCCTGTTTACAGGTTGTCATCAATGTGATGTCAGTATGTACAATATAGTCAACTTGATAGC
+AAGTTGTTGGCTTATTTCAGATTGTATGGGCAATGTAATCAACCATATGTGAAATAAATTGCAA
--- a/test-data/tblastn_four_human_vs_rhodopsin.html	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/tblastn_four_human_vs_rhodopsin.html	Wed Apr 19 05:27:19 2017 -0400
@@ -3,31 +3,22 @@
 <BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099">
 <PRE>
 
-<b>TBLASTN 2.2.31+</b>
+<b>TBLASTN 2.5.0+</b>
 
 
-<b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
-OS=Homo sapiens GN=ERP44 PE=1 SV=1
-
-Length=406
-
-<b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
-
-Length=1047
-
-
-***** No hits found *****
+<b><a
+href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=R
+etrieve&list_uids=9254694&dopt=Citation">Reference</a>:</b>
+Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer,
+Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
+"Gapped BLAST and PSI-BLAST: a new generation of protein database
+search programs", Nucleic Acids Res. 25:3389-3402.
 
 
 
-Lambda      K        H        a         alpha
-   0.347    0.182    0.684    0.522     1.92 
+Database: User specified sequence set (Input: rhodopsin_nucs.fasta).
+           6 sequences; 10,296 total letters
 
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 127710
 
 
 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
@@ -35,61 +26,6 @@
 
 Length=406
 
-<b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
-cds
-
-Length=1574
-
-
-***** No hits found *****
-
-
-
-Lambda      K        H        a         alpha
-   0.347    0.182    0.684    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 127710
-
-
-<b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
-OS=Homo sapiens GN=ERP44 PE=1 SV=1
-
-Length=406
-
-<b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
-rhodopsin (RHO) gene, exons 1 through 5 and partial cds
-
-Length=4301
-
-
-***** No hits found *****
-
-
-
-Lambda      K        H        a         alpha
-   0.347    0.182    0.684    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 127710
-
-
-<b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
-OS=Homo sapiens GN=ERP44 PE=1 SV=1
-
-Length=406
-
-<b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
-(RHO) mRNA, partial cds
-
-Length=983
-
 
 ***** No hits found *****
 
@@ -102,57 +38,7 @@
 Lambda      K        H        a         alpha    sigma
    0.299   0.0710    0.270     1.10     13.8     14.5 
 
-Effective search space used: 127710
-
-
-<b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
-OS=Homo sapiens GN=ERP44 PE=1 SV=1
-
-Length=406
-
-<b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
-rhodopsin, complete cds
-
-Length=1047
-
-
-***** No hits found *****
-
-
-
-Lambda      K        H        a         alpha
-   0.347    0.182    0.684    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 127710
-
-
-<b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
-OS=Homo sapiens GN=ERP44 PE=1 SV=1
-
-Length=406
-
-<b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
-water form rod opsin, complete cds
-
-Length=1344
-
-
-***** No hits found *****
-
-
-
-Lambda      K        H        a         alpha
-   0.347    0.182    0.684    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 127710
+Effective search space used: 1239330
 
 
 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
@@ -160,60 +46,6 @@
 
 Length=1161
 
-<b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
-
-Length=1047
-
-
-***** No hits found *****
-
-
-
-Lambda      K        H        a         alpha
-   0.334    0.170    0.615    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 370988
-
-
-<b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
-GN=BMP2K PE=1 SV=2
-
-Length=1161
-
-<b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
-cds
-
-Length=1574
-
-
-***** No hits found *****
-
-
-
-Lambda      K        H        a         alpha
-   0.334    0.170    0.615    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 370988
-
-
-<b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
-GN=BMP2K PE=1 SV=2
-
-Length=1161
-
-<b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
-rhodopsin (RHO) gene, exons 1 through 5 and partial cds
-
-Length=4301
-
 
 ***** No hits found *****
 
@@ -226,82 +58,7 @@
 Lambda      K        H        a         alpha    sigma
    0.299   0.0710    0.270     1.10     13.8     14.5 
 
-Effective search space used: 370988
-
-
-<b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
-GN=BMP2K PE=1 SV=2
-
-Length=1161
-
-<b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
-(RHO) mRNA, partial cds
-
-Length=983
-
-
-***** No hits found *****
-
-
-
-Lambda      K        H        a         alpha
-   0.334    0.170    0.615    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 370988
-
-
-<b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
-GN=BMP2K PE=1 SV=2
-
-Length=1161
-
-<b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
-rhodopsin, complete cds
-
-Length=1047
-
-
-***** No hits found *****
-
-
-
-Lambda      K        H        a         alpha
-   0.334    0.170    0.615    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 370988
-
-
-<b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
-GN=BMP2K PE=1 SV=2
-
-Length=1161
-
-<b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
-water form rod opsin, complete cds
-
-Length=1344
-
-
-***** No hits found *****
-
-
-
-Lambda      K        H        a         alpha
-   0.334    0.170    0.615    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 370988
+Effective search space used: 3667980
 
 
 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
@@ -309,10 +66,6 @@
 
 Length=1382
 
-<b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
-
-Length=1047
-
 
 ***** No hits found *****
 
@@ -325,143 +78,27 @@
 Lambda      K        H        a         alpha    sigma
    0.299   0.0710    0.270     1.10     13.8     14.5 
 
-Effective search space used: 441350
-
-
-<b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
-SV=4
-
-Length=1382
-
-<b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
-cds
-
-Length=1574
-
-
-***** No hits found *****
-
-
-
-Lambda      K        H        a         alpha
-   0.346    0.180    0.700    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 441350
-
-
-<b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
-SV=4
-
-Length=1382
-
-<b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
-rhodopsin (RHO) gene, exons 1 through 5 and partial cds
-
-Length=4301
-
-
-***** No hits found *****
-
-
-
-Lambda      K        H        a         alpha
-   0.346    0.180    0.700    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 441350
-
-
-<b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
-SV=4
-
-Length=1382
-
-<b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
-(RHO) mRNA, partial cds
-
-Length=983
-
-
-***** No hits found *****
-
-
-
-Lambda      K        H        a         alpha
-   0.346    0.180    0.700    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 441350
-
-
-<b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
-SV=4
-
-Length=1382
-
-<b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
-rhodopsin, complete cds
-
-Length=1047
-
-
-***** No hits found *****
-
-
-
-Lambda      K        H        a         alpha
-   0.346    0.180    0.700    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 441350
-
-
-<b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
-SV=4
-
-Length=1382
-
-<b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
-water form rod opsin, complete cds
-
-Length=1344
-
-
-***** No hits found *****
-
-
-
-Lambda      K        H        a         alpha
-   0.346    0.180    0.700    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 441350
+Effective search space used: 4374000
 
 
 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
 
 Length=348
-
-<b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
+                                                                      Score     E
+Sequences producing significant alignments:                          (Bits)  Value
 
+  gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA   <a href=#Subject_1>732</a>     0.0  
+  gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene...  <a href=#Subject_5>711</a>     0.0  
+  gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodo...  <a href=#Subject_4>658</a>     0.0  
+  gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, compl...  <a href=#Subject_2>646</a>     0.0  
+  gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fres...  <a href=#Subject_6>626</a>     0.0  
+  gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020...  <a href=#Subject_3>151</a>     1e-71
+
+
+><a name=Subject_1></a> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), 
+mRNA
 Length=1047
 
-
  Score = 732 bits (1689),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 336/348 (97%), Positives = 343/348 (99%), Gaps = 0/348 (0%)
  Frame = +1
@@ -491,27 +128,76 @@
 Sbjct  901   YNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA  1044
 
 
+><a name=Subject_5></a> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene 
+for rhodopsin, complete cds
+Length=1047
 
-Lambda      K        H        a         alpha
-   0.351    0.182    0.707    0.522     1.92 
+ Score = 711 bits (1640),  Expect = 0.0, Method: Compositional matrix adjust.
+ Identities = 325/348 (93%), Positives = 337/348 (97%), Gaps = 0/348 (0%)
+ Frame = +1
+
+Query  1     MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY  60
+             MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLY
+Sbjct  1     MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLY  180
+
+Query  61    VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG  120
+             VTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLG
+Sbjct  181   VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG  360
 
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
+Query  121   GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP  180
+             GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIP
+Sbjct  361   GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIP  540
+
+Query  181   EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES  240
+             EG+QCSCGIDYYT   E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQES
+Sbjct  541   EGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES  720
 
-Effective search space used: 109230
+Query  241   ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI  300
+             ATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+
+Sbjct  721   ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAV  900
+
+Query  301   YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA  348
+             YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA
+Sbjct  901   YNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA  1044
 
 
-<b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
+><a name=Subject_4></a> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin 
+(RHO) mRNA, partial cds
+Length=983
+
+ Score = 658 bits (1517),  Expect = 0.0, Method: Compositional matrix adjust.
+ Identities = 310/326 (95%), Positives = 322/326 (99%), Gaps = 0/326 (0%)
+ Frame = +1
 
-Length=348
+Query  11   VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT  70
+            VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
+Sbjct  1    VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT  180
+
+Query  71   PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVV  130
+            PLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVV
+Sbjct  181  PLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVV  360
 
-<b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
-cds
+Query  131  LAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGID  190
+            LAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGID
+Sbjct  361  LAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGID  540
+
+Query  191  YYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV  250
+            YYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEV
+Sbjct  541  YYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV  720
 
+Query  251  TRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMN  310
+            TRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMN
+Sbjct  721  TRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMN  900
+
+Query  311  KQFRNCMLTTICCGKNPLGDDEASAT  336
+            KQFRNCMLTT+CCGKNPLGDDEAS T
+Sbjct  901  KQFRNCMLTTLCCGKNPLGDDEASTT  978
+
+
+><a name=Subject_2></a> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete 
+cds
 Length=1574
 
-
  Score = 646 bits (1489),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 290/342 (85%), Positives = 320/342 (94%), Gaps = 1/342 (0%)
  Frame = +3
@@ -541,201 +227,10 @@
 Sbjct  942   YNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE  1067
 
 
-
-Lambda      K        H        a         alpha
-   0.351    0.182    0.707    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 109230
-
-
-<b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
-
-Length=348
-
-<b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
-rhodopsin (RHO) gene, exons 1 through 5 and partial cds
-
-Length=4301
-
-
- Score = 151 bits (342),  Expect(2) = 1e-72, Method: Compositional matrix adjust.
- Identities = 69/74 (93%), Positives = 73/74 (99%), Gaps = 0/74 (0%)
- Frame = +3
-
-Query  239   ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSA  298
-             ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS+
-Sbjct  3147  ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSS  3326
-
-Query  299   AIYNPVIYIMMNKQ  312
-             +IYNPVIYIMMNKQ
-Sbjct  3327  SIYNPVIYIMMNKQ  3368
-
-
- Score = 126 bits (284),  Expect(2) = 1e-72, Method: Compositional matrix adjust.
- Identities = 54/59 (92%), Positives = 57/59 (97%), Gaps = 0/59 (0%)
- Frame = +2
-
-Query  177   RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA  235
-             RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE  +
-Sbjct  2855  RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS  3031
-
-
- Score = 229 bits (523),  Expect = 9e-67, Method: Compositional matrix adjust.
- Identities = 107/111 (96%), Positives = 109/111 (98%), Gaps = 0/111 (0%)
- Frame = +1
-
-Query  11   VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT  70
-            VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
-Sbjct  1    VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT  180
-
-Query  71   PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG  121
-            PLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG
-Sbjct  181  PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG  333
-
-
- Score = 122 bits (276),  Expect = 1e-32, Method: Compositional matrix adjust.
- Identities = 55/59 (93%), Positives = 56/59 (95%), Gaps = 0/59 (0%)
- Frame = +3
-
-Query  119   LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR  177
-             L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR
-Sbjct  1404  LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR  1580
-
-
- Score = 57.7 bits (125),  Expect = 2e-12, Method: Compositional matrix adjust.
- Identities = 23/26 (88%), Positives = 24/26 (92%), Gaps = 0/26 (0%)
- Frame = +1
-
-Query  312   QFRNCMLTTICCGKNPLGDDEASATV  337
-             QFRNCMLTT+CCGKNPLGDDEAS T 
-Sbjct  4222  QFRNCMLTTLCCGKNPLGDDEASTTA  4299
-
-
-
-Lambda      K        H        a         alpha
-   0.351    0.182    0.707    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 109230
-
-
-<b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
-
-Length=348
-
-<b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
-(RHO) mRNA, partial cds
-
-Length=983
-
-
- Score = 658 bits (1517),  Expect = 0.0, Method: Compositional matrix adjust.
- Identities = 310/326 (95%), Positives = 322/326 (99%), Gaps = 0/326 (0%)
- Frame = +1
-
-Query  11   VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT  70
-            VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
-Sbjct  1    VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT  180
-
-Query  71   PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVV  130
-            PLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVV
-Sbjct  181  PLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVV  360
-
-Query  131  LAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGID  190
-            LAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGID
-Sbjct  361  LAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGID  540
-
-Query  191  YYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV  250
-            YYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEV
-Sbjct  541  YYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV  720
-
-Query  251  TRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMN  310
-            TRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMN
-Sbjct  721  TRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMN  900
-
-Query  311  KQFRNCMLTTICCGKNPLGDDEASAT  336
-            KQFRNCMLTT+CCGKNPLGDDEAS T
-Sbjct  901  KQFRNCMLTTLCCGKNPLGDDEASTT  978
-
-
-
-Lambda      K        H        a         alpha
-   0.351    0.182    0.707    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 109230
-
-
-<b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
-
-Length=348
-
-<b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
-rhodopsin, complete cds
-
-Length=1047
-
-
- Score = 711 bits (1640),  Expect = 0.0, Method: Compositional matrix adjust.
- Identities = 325/348 (93%), Positives = 337/348 (97%), Gaps = 0/348 (0%)
- Frame = +1
-
-Query  1     MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY  60
-             MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLY
-Sbjct  1     MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLY  180
-
-Query  61    VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG  120
-             VTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLG
-Sbjct  181   VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG  360
-
-Query  121   GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP  180
-             GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIP
-Sbjct  361   GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIP  540
-
-Query  181   EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES  240
-             EG+QCSCGIDYYT   E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQES
-Sbjct  541   EGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES  720
-
-Query  241   ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI  300
-             ATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+
-Sbjct  721   ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAV  900
-
-Query  301   YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA  348
-             YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA
-Sbjct  901   YNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA  1044
-
-
-
-Lambda      K        H        a         alpha
-   0.351    0.182    0.707    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 109230
-
-
-<b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
-
-Length=348
-
-<b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
+><a name=Subject_6></a> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh 
 water form rod opsin, complete cds
-
 Length=1344
 
-
  Score = 626 bits (1444),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 281/342 (82%), Positives = 311/342 (91%), Gaps = 1/342 (0%)
  Frame = +2
@@ -765,6 +260,63 @@
 Sbjct  923   YNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE  1048
 
 
+><a name=Subject_3></a> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 
+rhodopsin (RHO) gene, exons 1 through 5 and partial cds
+Length=4301
+
+ Score = 151 bits (342),  Expect(2) = 1e-71, Method: Compositional matrix adjust.
+ Identities = 69/74 (93%), Positives = 73/74 (99%), Gaps = 0/74 (0%)
+ Frame = +3
+
+Query  239   ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSA  298
+             ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS+
+Sbjct  3147  ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSS  3326
+
+Query  299   AIYNPVIYIMMNKQ  312
+             +IYNPVIYIMMNKQ
+Sbjct  3327  SIYNPVIYIMMNKQ  3368
+
+
+ Score = 126 bits (284),  Expect(2) = 1e-71, Method: Compositional matrix adjust.
+ Identities = 54/59 (92%), Positives = 57/59 (97%), Gaps = 0/59 (0%)
+ Frame = +2
+
+Query  177   RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA  235
+             RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE  +
+Sbjct  2855  RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS  3031
+
+
+ Score = 229 bits (523),  Expect = 3e-67, Method: Compositional matrix adjust.
+ Identities = 107/111 (96%), Positives = 109/111 (98%), Gaps = 0/111 (0%)
+ Frame = +1
+
+Query  11   VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT  70
+            VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
+Sbjct  1    VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT  180
+
+Query  71   PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG  121
+            PLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG
+Sbjct  181  PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG  333
+
+
+ Score = 122 bits (276),  Expect = 2e-32, Method: Compositional matrix adjust.
+ Identities = 55/59 (93%), Positives = 56/59 (95%), Gaps = 0/59 (0%)
+ Frame = +3
+
+Query  119   LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR  177
+             L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR
+Sbjct  1404  LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR  1580
+
+
+ Score = 57.7 bits (125),  Expect = 4e-12, Method: Compositional matrix adjust.
+ Identities = 23/26 (88%), Positives = 24/26 (92%), Gaps = 0/26 (0%)
+ Frame = +1
+
+Query  312   QFRNCMLTTICCGKNPLGDDEASATV  337
+             QFRNCMLTT+CCGKNPLGDDEAS T 
+Sbjct  4222  QFRNCMLTTLCCGKNPLGDDEASTTA  4299
+
+
 
 Lambda      K        H        a         alpha
    0.351    0.182    0.707    0.522     1.92 
@@ -773,8 +325,13 @@
 Lambda      K        H        a         alpha    sigma
    0.299   0.0710    0.270     1.10     13.8     14.5 
 
-Effective search space used: 109230
+Effective search space used: 1049670
+
 
+  Database: User specified sequence set (Input: rhodopsin_nucs.fasta).
+    Posted date:  Unknown
+  Number of letters in database: 10,296
+  Number of sequences in database:  6
 
 
 
--- a/test-data/tblastn_four_human_vs_rhodopsin.tabular	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/tblastn_four_human_vs_rhodopsin.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -1,10 +1,10 @@
-sp|P08100|OPSD_HUMAN	gi|57163782|ref|NM_001009242.1|	96.55	348	12	0	1	348	1	1044	0.0	732
-sp|P08100|OPSD_HUMAN	gi|2734705|gb|U59921.1|BBU59921	84.80	342	51	1	1	341	42	1067	0.0	646
-sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	93.24	74	5	0	239	312	3147	3368	1e-72	151
-sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	91.53	59	5	0	177	235	2855	3031	1e-72	126
-sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	96.40	111	4	0	11	121	1	333	9e-67	229
-sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	93.22	59	4	0	119	177	1404	1580	1e-32	122
-sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	88.46	26	3	0	312	337	4222	4299	2e-12	57.7
-sp|P08100|OPSD_HUMAN	gi|283855822|gb|GQ290312.1|	95.09	326	16	0	11	336	1	978	0.0	658
-sp|P08100|OPSD_HUMAN	gi|18148870|dbj|AB062417.1|	93.39	348	23	0	1	348	1	1044	0.0	711
-sp|P08100|OPSD_HUMAN	gi|12583664|dbj|AB043817.1|	82.16	342	60	1	1	341	23	1048	0.0	626
+sp|P08100|OPSD_HUMAN	gi|57163782|ref|NM_001009242.1|	96.552	348	12	0	1	348	1	1044	0.0	732
+sp|P08100|OPSD_HUMAN	gi|18148870|dbj|AB062417.1|	93.391	348	23	0	1	348	1	1044	0.0	711
+sp|P08100|OPSD_HUMAN	gi|283855822|gb|GQ290312.1|	95.092	326	16	0	11	336	1	978	0.0	658
+sp|P08100|OPSD_HUMAN	gi|2734705|gb|U59921.1|BBU59921	84.795	342	51	1	1	341	42	1067	0.0	646
+sp|P08100|OPSD_HUMAN	gi|12583664|dbj|AB043817.1|	82.164	342	60	1	1	341	23	1048	0.0	626
+sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	93.243	74	5	0	239	312	3147	3368	1.34e-71	151
+sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	91.525	59	5	0	177	235	2855	3031	1.34e-71	126
+sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	96.396	111	4	0	11	121	1	333	3.31e-67	229
+sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	93.220	59	4	0	119	177	1404	1580	2.31e-32	122
+sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	88.462	26	3	0	312	337	4222	4299	3.61e-12	57.7
--- a/test-data/tblastn_four_human_vs_rhodopsin.xml	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/tblastn_four_human_vs_rhodopsin.xml	Wed Apr 19 05:27:19 2017 -0400
@@ -2,7 +2,7 @@
 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
 <BlastOutput>
   <BlastOutput_program>tblastn</BlastOutput_program>
-  <BlastOutput_version>TBLASTN 2.2.31+</BlastOutput_version>
+  <BlastOutput_version>TBLASTN 2.5.0+</BlastOutput_version>
   <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
   <BlastOutput_db></BlastOutput_db>
   <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
@@ -29,8 +29,8 @@
     <Statistics>
       <Statistics_db-num>0</Statistics_db-num>
       <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>19</Statistics_hsp-len>
-      <Statistics_eff-space>127710</Statistics_eff-space>
+      <Statistics_hsp-len>27</Statistics_hsp-len>
+      <Statistics_eff-space>1239330</Statistics_eff-space>
       <Statistics_kappa>0.071</Statistics_kappa>
       <Statistics_lambda>0.299</Statistics_lambda>
       <Statistics_entropy>0.27</Statistics_entropy>
@@ -40,146 +40,6 @@
 </Iteration>
 <Iteration>
   <Iteration_iter-num>2</Iteration_iter-num>
-  <Iteration_query-ID>Query_1</Iteration_query-ID>
-  <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
-  <Iteration_query-len>406</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>19</Statistics_hsp-len>
-      <Statistics_eff-space>127710</Statistics_eff-space>
-      <Statistics_kappa>0.071</Statistics_kappa>
-      <Statistics_lambda>0.299</Statistics_lambda>
-      <Statistics_entropy>0.27</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>3</Iteration_iter-num>
-  <Iteration_query-ID>Query_1</Iteration_query-ID>
-  <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
-  <Iteration_query-len>406</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>19</Statistics_hsp-len>
-      <Statistics_eff-space>127710</Statistics_eff-space>
-      <Statistics_kappa>0.071</Statistics_kappa>
-      <Statistics_lambda>0.299</Statistics_lambda>
-      <Statistics_entropy>0.27</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>4</Iteration_iter-num>
-  <Iteration_query-ID>Query_1</Iteration_query-ID>
-  <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
-  <Iteration_query-len>406</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>19</Statistics_hsp-len>
-      <Statistics_eff-space>127710</Statistics_eff-space>
-      <Statistics_kappa>0.071</Statistics_kappa>
-      <Statistics_lambda>0.299</Statistics_lambda>
-      <Statistics_entropy>0.27</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>5</Iteration_iter-num>
-  <Iteration_query-ID>Query_1</Iteration_query-ID>
-  <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
-  <Iteration_query-len>406</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>19</Statistics_hsp-len>
-      <Statistics_eff-space>127710</Statistics_eff-space>
-      <Statistics_kappa>0.071</Statistics_kappa>
-      <Statistics_lambda>0.299</Statistics_lambda>
-      <Statistics_entropy>0.27</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>6</Iteration_iter-num>
-  <Iteration_query-ID>Query_1</Iteration_query-ID>
-  <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
-  <Iteration_query-len>406</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>19</Statistics_hsp-len>
-      <Statistics_eff-space>127710</Statistics_eff-space>
-      <Statistics_kappa>0.071</Statistics_kappa>
-      <Statistics_lambda>0.299</Statistics_lambda>
-      <Statistics_entropy>0.27</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>7</Iteration_iter-num>
-  <Iteration_query-ID>Query_2</Iteration_query-ID>
-  <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def>
-  <Iteration_query-len>1161</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>23</Statistics_hsp-len>
-      <Statistics_eff-space>370988</Statistics_eff-space>
-      <Statistics_kappa>0.071</Statistics_kappa>
-      <Statistics_lambda>0.299</Statistics_lambda>
-      <Statistics_entropy>0.27</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>8</Iteration_iter-num>
-  <Iteration_query-ID>Query_2</Iteration_query-ID>
-  <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def>
-  <Iteration_query-len>1161</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>23</Statistics_hsp-len>
-      <Statistics_eff-space>370988</Statistics_eff-space>
-      <Statistics_kappa>0.071</Statistics_kappa>
-      <Statistics_lambda>0.299</Statistics_lambda>
-      <Statistics_entropy>0.27</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>9</Iteration_iter-num>
   <Iteration_query-ID>Query_2</Iteration_query-ID>
   <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def>
   <Iteration_query-len>1161</Iteration_query-len>
@@ -189,28 +49,8 @@
     <Statistics>
       <Statistics_db-num>0</Statistics_db-num>
       <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>23</Statistics_hsp-len>
-      <Statistics_eff-space>370988</Statistics_eff-space>
-      <Statistics_kappa>0.071</Statistics_kappa>
-      <Statistics_lambda>0.299</Statistics_lambda>
-      <Statistics_entropy>0.27</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>10</Iteration_iter-num>
-  <Iteration_query-ID>Query_2</Iteration_query-ID>
-  <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def>
-  <Iteration_query-len>1161</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>23</Statistics_hsp-len>
-      <Statistics_eff-space>370988</Statistics_eff-space>
+      <Statistics_hsp-len>31</Statistics_hsp-len>
+      <Statistics_eff-space>3667980</Statistics_eff-space>
       <Statistics_kappa>0.071</Statistics_kappa>
       <Statistics_lambda>0.299</Statistics_lambda>
       <Statistics_entropy>0.27</Statistics_entropy>
@@ -219,47 +59,7 @@
   <Iteration_message>No hits found</Iteration_message>
 </Iteration>
 <Iteration>
-  <Iteration_iter-num>11</Iteration_iter-num>
-  <Iteration_query-ID>Query_2</Iteration_query-ID>
-  <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def>
-  <Iteration_query-len>1161</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>23</Statistics_hsp-len>
-      <Statistics_eff-space>370988</Statistics_eff-space>
-      <Statistics_kappa>0.071</Statistics_kappa>
-      <Statistics_lambda>0.299</Statistics_lambda>
-      <Statistics_entropy>0.27</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>12</Iteration_iter-num>
-  <Iteration_query-ID>Query_2</Iteration_query-ID>
-  <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def>
-  <Iteration_query-len>1161</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>23</Statistics_hsp-len>
-      <Statistics_eff-space>370988</Statistics_eff-space>
-      <Statistics_kappa>0.071</Statistics_kappa>
-      <Statistics_lambda>0.299</Statistics_lambda>
-      <Statistics_entropy>0.27</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>13</Iteration_iter-num>
+  <Iteration_iter-num>3</Iteration_iter-num>
   <Iteration_query-ID>Query_3</Iteration_query-ID>
   <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def>
   <Iteration_query-len>1382</Iteration_query-len>
@@ -269,48 +69,8 @@
     <Statistics>
       <Statistics_db-num>0</Statistics_db-num>
       <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>24</Statistics_hsp-len>
-      <Statistics_eff-space>441350</Statistics_eff-space>
-      <Statistics_kappa>0.071</Statistics_kappa>
-      <Statistics_lambda>0.299</Statistics_lambda>
-      <Statistics_entropy>0.27</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>14</Iteration_iter-num>
-  <Iteration_query-ID>Query_3</Iteration_query-ID>
-  <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def>
-  <Iteration_query-len>1382</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>24</Statistics_hsp-len>
-      <Statistics_eff-space>441350</Statistics_eff-space>
-      <Statistics_kappa>0.071</Statistics_kappa>
-      <Statistics_lambda>0.299</Statistics_lambda>
-      <Statistics_entropy>0.27</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>15</Iteration_iter-num>
-  <Iteration_query-ID>Query_3</Iteration_query-ID>
-  <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def>
-  <Iteration_query-len>1382</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>24</Statistics_hsp-len>
-      <Statistics_eff-space>441350</Statistics_eff-space>
+      <Statistics_hsp-len>32</Statistics_hsp-len>
+      <Statistics_eff-space>4374000</Statistics_eff-space>
       <Statistics_kappa>0.071</Statistics_kappa>
       <Statistics_lambda>0.299</Statistics_lambda>
       <Statistics_entropy>0.27</Statistics_entropy>
@@ -319,74 +79,14 @@
   <Iteration_message>No hits found</Iteration_message>
 </Iteration>
 <Iteration>
-  <Iteration_iter-num>16</Iteration_iter-num>
-  <Iteration_query-ID>Query_3</Iteration_query-ID>
-  <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def>
-  <Iteration_query-len>1382</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>24</Statistics_hsp-len>
-      <Statistics_eff-space>441350</Statistics_eff-space>
-      <Statistics_kappa>0.071</Statistics_kappa>
-      <Statistics_lambda>0.299</Statistics_lambda>
-      <Statistics_entropy>0.27</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>17</Iteration_iter-num>
-  <Iteration_query-ID>Query_3</Iteration_query-ID>
-  <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def>
-  <Iteration_query-len>1382</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>24</Statistics_hsp-len>
-      <Statistics_eff-space>441350</Statistics_eff-space>
-      <Statistics_kappa>0.071</Statistics_kappa>
-      <Statistics_lambda>0.299</Statistics_lambda>
-      <Statistics_entropy>0.27</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>18</Iteration_iter-num>
-  <Iteration_query-ID>Query_3</Iteration_query-ID>
-  <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def>
-  <Iteration_query-len>1382</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>24</Statistics_hsp-len>
-      <Statistics_eff-space>441350</Statistics_eff-space>
-      <Statistics_kappa>0.071</Statistics_kappa>
-      <Statistics_lambda>0.299</Statistics_lambda>
-      <Statistics_entropy>0.27</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>19</Iteration_iter-num>
+  <Iteration_iter-num>4</Iteration_iter-num>
   <Iteration_query-ID>Query_4</Iteration_query-ID>
   <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def>
   <Iteration_query-len>348</Iteration_query-len>
 <Iteration_hits>
 <Hit>
   <Hit_num>1</Hit_num>
-  <Hit_id>Subject_1</Hit_id>
+  <Hit_id>gi|57163782|ref|NM_001009242.1|</Hit_id>
   <Hit_def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Hit_def>
   <Hit_accession>Subject_1</Hit_accession>
   <Hit_len>1047</Hit_len>
@@ -412,28 +112,65 @@
     </Hsp>
   </Hit_hsps>
 </Hit>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>18</Statistics_hsp-len>
-      <Statistics_eff-space>109230</Statistics_eff-space>
-      <Statistics_kappa>0.071</Statistics_kappa>
-      <Statistics_lambda>0.299</Statistics_lambda>
-      <Statistics_entropy>0.27</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>20</Iteration_iter-num>
-  <Iteration_query-ID>Query_4</Iteration_query-ID>
-  <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def>
-  <Iteration_query-len>348</Iteration_query-len>
-<Iteration_hits>
+<Hit>
+  <Hit_num>2</Hit_num>
+  <Hit_id>gi|18148870|dbj|AB062417.1|</Hit_id>
+  <Hit_def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Hit_def>
+  <Hit_accession>Subject_5</Hit_accession>
+  <Hit_len>1047</Hit_len>
+  <Hit_hsps>
+    <Hsp>
+      <Hsp_num>1</Hsp_num>
+      <Hsp_bit-score>711.256</Hsp_bit-score>
+      <Hsp_score>1640</Hsp_score>
+      <Hsp_evalue>0</Hsp_evalue>
+      <Hsp_query-from>1</Hsp_query-from>
+      <Hsp_query-to>348</Hsp_query-to>
+      <Hsp_hit-from>1</Hsp_hit-from>
+      <Hsp_hit-to>1044</Hsp_hit-to>
+      <Hsp_query-frame>0</Hsp_query-frame>
+      <Hsp_hit-frame>1</Hsp_hit-frame>
+      <Hsp_identity>325</Hsp_identity>
+      <Hsp_positive>337</Hsp_positive>
+      <Hsp_gaps>0</Hsp_gaps>
+      <Hsp_align-len>348</Hsp_align-len>
+      <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq>
+      <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_hseq>
+      <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYT   E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline>
+    </Hsp>
+  </Hit_hsps>
+</Hit>
 <Hit>
-  <Hit_num>1</Hit_num>
-  <Hit_id>Subject_2</Hit_id>
+  <Hit_num>3</Hit_num>
+  <Hit_id>gi|283855822|gb|GQ290312.1|</Hit_id>
+  <Hit_def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Hit_def>
+  <Hit_accession>Subject_4</Hit_accession>
+  <Hit_len>983</Hit_len>
+  <Hit_hsps>
+    <Hsp>
+      <Hsp_num>1</Hsp_num>
+      <Hsp_bit-score>658.198</Hsp_bit-score>
+      <Hsp_score>1517</Hsp_score>
+      <Hsp_evalue>0</Hsp_evalue>
+      <Hsp_query-from>11</Hsp_query-from>
+      <Hsp_query-to>336</Hsp_query-to>
+      <Hsp_hit-from>1</Hsp_hit-from>
+      <Hsp_hit-to>978</Hsp_hit-to>
+      <Hsp_query-frame>0</Hsp_query-frame>
+      <Hsp_hit-frame>1</Hsp_hit-frame>
+      <Hsp_identity>310</Hsp_identity>
+      <Hsp_positive>322</Hsp_positive>
+      <Hsp_gaps>0</Hsp_gaps>
+      <Hsp_align-len>326</Hsp_align-len>
+      <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT</Hsp_qseq>
+      <Hsp_hseq>VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT</Hsp_hseq>
+      <Hsp_midline>VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T</Hsp_midline>
+    </Hsp>
+  </Hit_hsps>
+</Hit>
+<Hit>
+  <Hit_num>4</Hit_num>
+  <Hit_id>gi|2734705|gb|U59921.1|BBU59921</Hit_id>
   <Hit_def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Hit_def>
   <Hit_accession>Subject_2</Hit_accession>
   <Hit_len>1574</Hit_len>
@@ -459,245 +196,9 @@
     </Hsp>
   </Hit_hsps>
 </Hit>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>18</Statistics_hsp-len>
-      <Statistics_eff-space>109230</Statistics_eff-space>
-      <Statistics_kappa>0.071</Statistics_kappa>
-      <Statistics_lambda>0.299</Statistics_lambda>
-      <Statistics_entropy>0.27</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>21</Iteration_iter-num>
-  <Iteration_query-ID>Query_4</Iteration_query-ID>
-  <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def>
-  <Iteration_query-len>348</Iteration_query-len>
-<Iteration_hits>
 <Hit>
-  <Hit_num>1</Hit_num>
-  <Hit_id>Subject_3</Hit_id>
-  <Hit_def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Hit_def>
-  <Hit_accession>Subject_3</Hit_accession>
-  <Hit_len>4301</Hit_len>
-  <Hit_hsps>
-    <Hsp>
-      <Hsp_num>1</Hsp_num>
-      <Hsp_bit-score>151.343</Hsp_bit-score>
-      <Hsp_score>342</Hsp_score>
-      <Hsp_evalue>1.39567e-72</Hsp_evalue>
-      <Hsp_query-from>239</Hsp_query-from>
-      <Hsp_query-to>312</Hsp_query-to>
-      <Hsp_hit-from>3147</Hsp_hit-from>
-      <Hsp_hit-to>3368</Hsp_hit-to>
-      <Hsp_query-frame>0</Hsp_query-frame>
-      <Hsp_hit-frame>3</Hsp_hit-frame>
-      <Hsp_identity>69</Hsp_identity>
-      <Hsp_positive>73</Hsp_positive>
-      <Hsp_gaps>0</Hsp_gaps>
-      <Hsp_align-len>74</Hsp_align-len>
-      <Hsp_qseq>ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ</Hsp_qseq>
-      <Hsp_hseq>ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ</Hsp_hseq>
-      <Hsp_midline>ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline>
-    </Hsp>
-    <Hsp>
-      <Hsp_num>2</Hsp_num>
-      <Hsp_bit-score>126.324</Hsp_bit-score>
-      <Hsp_score>284</Hsp_score>
-      <Hsp_evalue>1.39567e-72</Hsp_evalue>
-      <Hsp_query-from>177</Hsp_query-from>
-      <Hsp_query-to>235</Hsp_query-to>
-      <Hsp_hit-from>2855</Hsp_hit-from>
-      <Hsp_hit-to>3031</Hsp_hit-to>
-      <Hsp_query-frame>0</Hsp_query-frame>
-      <Hsp_hit-frame>2</Hsp_hit-frame>
-      <Hsp_identity>54</Hsp_identity>
-      <Hsp_positive>57</Hsp_positive>
-      <Hsp_gaps>0</Hsp_gaps>
-      <Hsp_align-len>59</Hsp_align-len>
-      <Hsp_qseq>RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA</Hsp_qseq>
-      <Hsp_hseq>RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS</Hsp_hseq>
-      <Hsp_midline>RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE  +</Hsp_midline>
-    </Hsp>
-    <Hsp>
-      <Hsp_num>3</Hsp_num>
-      <Hsp_bit-score>229.42</Hsp_bit-score>
-      <Hsp_score>523</Hsp_score>
-      <Hsp_evalue>9.34154e-67</Hsp_evalue>
-      <Hsp_query-from>11</Hsp_query-from>
-      <Hsp_query-to>121</Hsp_query-to>
-      <Hsp_hit-from>1</Hsp_hit-from>
-      <Hsp_hit-to>333</Hsp_hit-to>
-      <Hsp_query-frame>0</Hsp_query-frame>
-      <Hsp_hit-frame>1</Hsp_hit-frame>
-      <Hsp_identity>107</Hsp_identity>
-      <Hsp_positive>109</Hsp_positive>
-      <Hsp_gaps>0</Hsp_gaps>
-      <Hsp_align-len>111</Hsp_align-len>
-      <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_qseq>
-      <Hsp_hseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_hseq>
-      <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_midline>
-    </Hsp>
-    <Hsp>
-      <Hsp_num>4</Hsp_num>
-      <Hsp_bit-score>122.873</Hsp_bit-score>
-      <Hsp_score>276</Hsp_score>
-      <Hsp_evalue>1.03783e-32</Hsp_evalue>
-      <Hsp_query-from>119</Hsp_query-from>
-      <Hsp_query-to>177</Hsp_query-to>
-      <Hsp_hit-from>1404</Hsp_hit-from>
-      <Hsp_hit-to>1580</Hsp_hit-to>
-      <Hsp_query-frame>0</Hsp_query-frame>
-      <Hsp_hit-frame>3</Hsp_hit-frame>
-      <Hsp_identity>55</Hsp_identity>
-      <Hsp_positive>56</Hsp_positive>
-      <Hsp_gaps>0</Hsp_gaps>
-      <Hsp_align-len>59</Hsp_align-len>
-      <Hsp_qseq>LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR</Hsp_qseq>
-      <Hsp_hseq>LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR</Hsp_hseq>
-      <Hsp_midline>L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR</Hsp_midline>
-    </Hsp>
-    <Hsp>
-      <Hsp_num>5</Hsp_num>
-      <Hsp_bit-score>57.7368</Hsp_bit-score>
-      <Hsp_score>125</Hsp_score>
-      <Hsp_evalue>1.50808e-12</Hsp_evalue>
-      <Hsp_query-from>312</Hsp_query-from>
-      <Hsp_query-to>337</Hsp_query-to>
-      <Hsp_hit-from>4222</Hsp_hit-from>
-      <Hsp_hit-to>4299</Hsp_hit-to>
-      <Hsp_query-frame>0</Hsp_query-frame>
-      <Hsp_hit-frame>1</Hsp_hit-frame>
-      <Hsp_identity>23</Hsp_identity>
-      <Hsp_positive>24</Hsp_positive>
-      <Hsp_gaps>0</Hsp_gaps>
-      <Hsp_align-len>26</Hsp_align-len>
-      <Hsp_qseq>QFRNCMLTTICCGKNPLGDDEASATV</Hsp_qseq>
-      <Hsp_hseq>QFRNCMLTTLCCGKNPLGDDEASTTA</Hsp_hseq>
-      <Hsp_midline>QFRNCMLTT+CCGKNPLGDDEAS T </Hsp_midline>
-    </Hsp>
-  </Hit_hsps>
-</Hit>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>18</Statistics_hsp-len>
-      <Statistics_eff-space>109230</Statistics_eff-space>
-      <Statistics_kappa>0.071</Statistics_kappa>
-      <Statistics_lambda>0.299</Statistics_lambda>
-      <Statistics_entropy>0.27</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>22</Iteration_iter-num>
-  <Iteration_query-ID>Query_4</Iteration_query-ID>
-  <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def>
-  <Iteration_query-len>348</Iteration_query-len>
-<Iteration_hits>
-<Hit>
-  <Hit_num>1</Hit_num>
-  <Hit_id>Subject_4</Hit_id>
-  <Hit_def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Hit_def>
-  <Hit_accession>Subject_4</Hit_accession>
-  <Hit_len>983</Hit_len>
-  <Hit_hsps>
-    <Hsp>
-      <Hsp_num>1</Hsp_num>
-      <Hsp_bit-score>658.198</Hsp_bit-score>
-      <Hsp_score>1517</Hsp_score>
-      <Hsp_evalue>0</Hsp_evalue>
-      <Hsp_query-from>11</Hsp_query-from>
-      <Hsp_query-to>336</Hsp_query-to>
-      <Hsp_hit-from>1</Hsp_hit-from>
-      <Hsp_hit-to>978</Hsp_hit-to>
-      <Hsp_query-frame>0</Hsp_query-frame>
-      <Hsp_hit-frame>1</Hsp_hit-frame>
-      <Hsp_identity>310</Hsp_identity>
-      <Hsp_positive>322</Hsp_positive>
-      <Hsp_gaps>0</Hsp_gaps>
-      <Hsp_align-len>326</Hsp_align-len>
-      <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT</Hsp_qseq>
-      <Hsp_hseq>VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT</Hsp_hseq>
-      <Hsp_midline>VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T</Hsp_midline>
-    </Hsp>
-  </Hit_hsps>
-</Hit>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>18</Statistics_hsp-len>
-      <Statistics_eff-space>109230</Statistics_eff-space>
-      <Statistics_kappa>0.071</Statistics_kappa>
-      <Statistics_lambda>0.299</Statistics_lambda>
-      <Statistics_entropy>0.27</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>23</Iteration_iter-num>
-  <Iteration_query-ID>Query_4</Iteration_query-ID>
-  <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def>
-  <Iteration_query-len>348</Iteration_query-len>
-<Iteration_hits>
-<Hit>
-  <Hit_num>1</Hit_num>
-  <Hit_id>Subject_5</Hit_id>
-  <Hit_def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Hit_def>
-  <Hit_accession>Subject_5</Hit_accession>
-  <Hit_len>1047</Hit_len>
-  <Hit_hsps>
-    <Hsp>
-      <Hsp_num>1</Hsp_num>
-      <Hsp_bit-score>711.256</Hsp_bit-score>
-      <Hsp_score>1640</Hsp_score>
-      <Hsp_evalue>0</Hsp_evalue>
-      <Hsp_query-from>1</Hsp_query-from>
-      <Hsp_query-to>348</Hsp_query-to>
-      <Hsp_hit-from>1</Hsp_hit-from>
-      <Hsp_hit-to>1044</Hsp_hit-to>
-      <Hsp_query-frame>0</Hsp_query-frame>
-      <Hsp_hit-frame>1</Hsp_hit-frame>
-      <Hsp_identity>325</Hsp_identity>
-      <Hsp_positive>337</Hsp_positive>
-      <Hsp_gaps>0</Hsp_gaps>
-      <Hsp_align-len>348</Hsp_align-len>
-      <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq>
-      <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_hseq>
-      <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYT   E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline>
-    </Hsp>
-  </Hit_hsps>
-</Hit>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>18</Statistics_hsp-len>
-      <Statistics_eff-space>109230</Statistics_eff-space>
-      <Statistics_kappa>0.071</Statistics_kappa>
-      <Statistics_lambda>0.299</Statistics_lambda>
-      <Statistics_entropy>0.27</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>24</Iteration_iter-num>
-  <Iteration_query-ID>Query_4</Iteration_query-ID>
-  <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def>
-  <Iteration_query-len>348</Iteration_query-len>
-<Iteration_hits>
-<Hit>
-  <Hit_num>1</Hit_num>
-  <Hit_id>Subject_6</Hit_id>
+  <Hit_num>5</Hit_num>
+  <Hit_id>gi|12583664|dbj|AB043817.1|</Hit_id>
   <Hit_def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Hit_def>
   <Hit_accession>Subject_6</Hit_accession>
   <Hit_len>1344</Hit_len>
@@ -723,13 +224,117 @@
     </Hsp>
   </Hit_hsps>
 </Hit>
+<Hit>
+  <Hit_num>6</Hit_num>
+  <Hit_id>gi|283855845|gb|GQ290303.1|</Hit_id>
+  <Hit_def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Hit_def>
+  <Hit_accession>Subject_3</Hit_accession>
+  <Hit_len>4301</Hit_len>
+  <Hit_hsps>
+    <Hsp>
+      <Hsp_num>1</Hsp_num>
+      <Hsp_bit-score>151.343</Hsp_bit-score>
+      <Hsp_score>342</Hsp_score>
+      <Hsp_evalue>1.34146e-71</Hsp_evalue>
+      <Hsp_query-from>239</Hsp_query-from>
+      <Hsp_query-to>312</Hsp_query-to>
+      <Hsp_hit-from>3147</Hsp_hit-from>
+      <Hsp_hit-to>3368</Hsp_hit-to>
+      <Hsp_query-frame>0</Hsp_query-frame>
+      <Hsp_hit-frame>3</Hsp_hit-frame>
+      <Hsp_identity>69</Hsp_identity>
+      <Hsp_positive>73</Hsp_positive>
+      <Hsp_gaps>0</Hsp_gaps>
+      <Hsp_align-len>74</Hsp_align-len>
+      <Hsp_qseq>ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ</Hsp_qseq>
+      <Hsp_hseq>ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ</Hsp_hseq>
+      <Hsp_midline>ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline>
+    </Hsp>
+    <Hsp>
+      <Hsp_num>2</Hsp_num>
+      <Hsp_bit-score>126.324</Hsp_bit-score>
+      <Hsp_score>284</Hsp_score>
+      <Hsp_evalue>1.34146e-71</Hsp_evalue>
+      <Hsp_query-from>177</Hsp_query-from>
+      <Hsp_query-to>235</Hsp_query-to>
+      <Hsp_hit-from>2855</Hsp_hit-from>
+      <Hsp_hit-to>3031</Hsp_hit-to>
+      <Hsp_query-frame>0</Hsp_query-frame>
+      <Hsp_hit-frame>2</Hsp_hit-frame>
+      <Hsp_identity>54</Hsp_identity>
+      <Hsp_positive>57</Hsp_positive>
+      <Hsp_gaps>0</Hsp_gaps>
+      <Hsp_align-len>59</Hsp_align-len>
+      <Hsp_qseq>RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA</Hsp_qseq>
+      <Hsp_hseq>RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS</Hsp_hseq>
+      <Hsp_midline>RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE  +</Hsp_midline>
+    </Hsp>
+    <Hsp>
+      <Hsp_num>3</Hsp_num>
+      <Hsp_bit-score>229.42</Hsp_bit-score>
+      <Hsp_score>523</Hsp_score>
+      <Hsp_evalue>3.3088e-67</Hsp_evalue>
+      <Hsp_query-from>11</Hsp_query-from>
+      <Hsp_query-to>121</Hsp_query-to>
+      <Hsp_hit-from>1</Hsp_hit-from>
+      <Hsp_hit-to>333</Hsp_hit-to>
+      <Hsp_query-frame>0</Hsp_query-frame>
+      <Hsp_hit-frame>1</Hsp_hit-frame>
+      <Hsp_identity>107</Hsp_identity>
+      <Hsp_positive>109</Hsp_positive>
+      <Hsp_gaps>0</Hsp_gaps>
+      <Hsp_align-len>111</Hsp_align-len>
+      <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_qseq>
+      <Hsp_hseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_hseq>
+      <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_midline>
+    </Hsp>
+    <Hsp>
+      <Hsp_num>4</Hsp_num>
+      <Hsp_bit-score>122.873</Hsp_bit-score>
+      <Hsp_score>276</Hsp_score>
+      <Hsp_evalue>2.31174e-32</Hsp_evalue>
+      <Hsp_query-from>119</Hsp_query-from>
+      <Hsp_query-to>177</Hsp_query-to>
+      <Hsp_hit-from>1404</Hsp_hit-from>
+      <Hsp_hit-to>1580</Hsp_hit-to>
+      <Hsp_query-frame>0</Hsp_query-frame>
+      <Hsp_hit-frame>3</Hsp_hit-frame>
+      <Hsp_identity>55</Hsp_identity>
+      <Hsp_positive>56</Hsp_positive>
+      <Hsp_gaps>0</Hsp_gaps>
+      <Hsp_align-len>59</Hsp_align-len>
+      <Hsp_qseq>LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR</Hsp_qseq>
+      <Hsp_hseq>LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR</Hsp_hseq>
+      <Hsp_midline>L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR</Hsp_midline>
+    </Hsp>
+    <Hsp>
+      <Hsp_num>5</Hsp_num>
+      <Hsp_bit-score>57.7368</Hsp_bit-score>
+      <Hsp_score>125</Hsp_score>
+      <Hsp_evalue>3.61181e-12</Hsp_evalue>
+      <Hsp_query-from>312</Hsp_query-from>
+      <Hsp_query-to>337</Hsp_query-to>
+      <Hsp_hit-from>4222</Hsp_hit-from>
+      <Hsp_hit-to>4299</Hsp_hit-to>
+      <Hsp_query-frame>0</Hsp_query-frame>
+      <Hsp_hit-frame>1</Hsp_hit-frame>
+      <Hsp_identity>23</Hsp_identity>
+      <Hsp_positive>24</Hsp_positive>
+      <Hsp_gaps>0</Hsp_gaps>
+      <Hsp_align-len>26</Hsp_align-len>
+      <Hsp_qseq>QFRNCMLTTICCGKNPLGDDEASATV</Hsp_qseq>
+      <Hsp_hseq>QFRNCMLTTLCCGKNPLGDDEASTTA</Hsp_hseq>
+      <Hsp_midline>QFRNCMLTT+CCGKNPLGDDEAS T </Hsp_midline>
+    </Hsp>
+  </Hit_hsps>
+</Hit>
 </Iteration_hits>
   <Iteration_stat>
     <Statistics>
       <Statistics_db-num>0</Statistics_db-num>
       <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>18</Statistics_hsp-len>
-      <Statistics_eff-space>109230</Statistics_eff-space>
+      <Statistics_hsp-len>27</Statistics_hsp-len>
+      <Statistics_eff-space>1049670</Statistics_eff-space>
       <Statistics_kappa>0.071</Statistics_kappa>
       <Statistics_lambda>0.299</Statistics_lambda>
       <Statistics_entropy>0.27</Statistics_entropy>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/tblastn_four_human_vs_rhodopsin_deflines.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -0,0 +1,10 @@
+P08100	NM_001009242	96.552	348	12	0	1	348	1	1044	0.0	732
+P08100	AB062417	93.391	348	23	0	1	348	1	1044	0.0	711
+P08100	GQ290312	95.092	326	16	0	11	336	1	978	0.0	658
+P08100	U59921	84.795	342	51	1	1	341	42	1067	0.0	646
+P08100	AB043817	82.164	342	60	1	1	341	23	1048	0.0	626
+P08100	GQ290303	93.243	74	5	0	239	312	3147	3368	1.34e-71	151
+P08100	GQ290303	91.525	59	5	0	177	235	2855	3031	1.34e-71	126
+P08100	GQ290303	96.396	111	4	0	11	121	1	333	3.31e-67	229
+P08100	GQ290303	93.220	59	4	0	119	177	1404	1580	2.31e-32	122
+P08100	GQ290303	88.462	26	3	0	312	337	4222	4299	3.61e-12	57.7
--- a/test-data/tblastn_four_human_vs_rhodopsin_ext.tabular	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/tblastn_four_human_vs_rhodopsin_ext.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -1,10 +1,10 @@
-sp|P08100|OPSD_HUMAN	gi|57163782|ref|NM_001009242.1|	96.55	348	12	0	1	348	1	1044	0.0	732	gi|57163782|ref|NM_001009242.1|	1689	336	343	0	98.56	0	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA	348	1047	N/A
-sp|P08100|OPSD_HUMAN	gi|2734705|gb|U59921.1|BBU59921	84.80	342	51	1	1	341	42	1067	0.0	646	gi|2734705|gb|U59921.1|BBU59921	1489	290	320	1	93.57	0	3	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE	MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE	348	1574	N/A
-sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	93.24	74	5	0	239	312	3147	3368	1e-72	151	gi|283855845|gb|GQ290303.1|	342	69	73	0	98.65	0	3	ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ	ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ	348	4301	N/A
-sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	91.53	59	5	0	177	235	2855	3031	1e-72	126	gi|283855845|gb|GQ290303.1|	284	54	57	0	96.61	0	2	RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA	RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS	348	4301	N/A
-sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	96.40	111	4	0	11	121	1	333	9e-67	229	gi|283855845|gb|GQ290303.1|	523	107	109	0	98.20	0	1	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG	VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG	348	4301	N/A
-sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	93.22	59	4	0	119	177	1404	1580	1e-32	122	gi|283855845|gb|GQ290303.1|	276	55	56	0	94.92	0	3	LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR	LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR	348	4301	N/A
-sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	88.46	26	3	0	312	337	4222	4299	2e-12	57.7	gi|283855845|gb|GQ290303.1|	125	23	24	0	92.31	0	1	QFRNCMLTTICCGKNPLGDDEASATV	QFRNCMLTTLCCGKNPLGDDEASTTA	348	4301	N/A
-sp|P08100|OPSD_HUMAN	gi|283855822|gb|GQ290312.1|	95.09	326	16	0	11	336	1	978	0.0	658	gi|283855822|gb|GQ290312.1|	1517	310	322	0	98.77	0	1	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT	VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT	348	983	N/A
-sp|P08100|OPSD_HUMAN	gi|18148870|dbj|AB062417.1|	93.39	348	23	0	1	348	1	1044	0.0	711	gi|18148870|dbj|AB062417.1|	1640	325	337	0	96.84	0	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA	348	1047	N/A
-sp|P08100|OPSD_HUMAN	gi|12583664|dbj|AB043817.1|	82.16	342	60	1	1	341	23	1048	0.0	626	gi|12583664|dbj|AB043817.1|	1444	281	311	1	90.94	0	2	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE	MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE	348	1344	N/A
+sp|P08100|OPSD_HUMAN	gi|57163782|ref|NM_001009242.1|	96.552	348	12	0	1	348	1	1044	0.0	732	gi|57163782|ref|NM_001009242.1|	1689	336	343	0	98.56	0	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA	348	1047	N/A
+sp|P08100|OPSD_HUMAN	gi|18148870|dbj|AB062417.1|	93.391	348	23	0	1	348	1	1044	0.0	711	gi|18148870|dbj|AB062417.1|	1640	325	337	0	96.84	0	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA	348	1047	N/A
+sp|P08100|OPSD_HUMAN	gi|283855822|gb|GQ290312.1|	95.092	326	16	0	11	336	1	978	0.0	658	gi|283855822|gb|GQ290312.1|	1517	310	322	0	98.77	0	1	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT	VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT	348	983	N/A
+sp|P08100|OPSD_HUMAN	gi|2734705|gb|U59921.1|BBU59921	84.795	342	51	1	1	341	42	1067	0.0	646	gi|2734705|gb|U59921.1|BBU59921	1489	290	320	1	93.57	0	3	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE	MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE	348	1574	N/A
+sp|P08100|OPSD_HUMAN	gi|12583664|dbj|AB043817.1|	82.164	342	60	1	1	341	23	1048	0.0	626	gi|12583664|dbj|AB043817.1|	1444	281	311	1	90.94	0	2	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE	MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE	348	1344	N/A
+sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	93.243	74	5	0	239	312	3147	3368	1.34e-71	151	gi|283855845|gb|GQ290303.1|	342	69	73	0	98.65	0	3	ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ	ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ	348	4301	N/A
+sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	91.525	59	5	0	177	235	2855	3031	1.34e-71	126	gi|283855845|gb|GQ290303.1|	284	54	57	0	96.61	0	2	RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA	RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS	348	4301	N/A
+sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	96.396	111	4	0	11	121	1	333	3.31e-67	229	gi|283855845|gb|GQ290303.1|	523	107	109	0	98.20	0	1	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG	VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG	348	4301	N/A
+sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	93.220	59	4	0	119	177	1404	1580	2.31e-32	122	gi|283855845|gb|GQ290303.1|	276	55	56	0	94.92	0	3	LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR	LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR	348	4301	N/A
+sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	88.462	26	3	0	312	337	4222	4299	3.61e-12	57.7	gi|283855845|gb|GQ290303.1|	125	23	24	0	92.31	0	1	QFRNCMLTTICCGKNPLGDDEASATV	QFRNCMLTTLCCGKNPLGDDEASTTA	348	4301	N/A
--- a/test-data/tblastx_rhodopsin_vs_three_human.tabular	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/tblastx_rhodopsin_vs_three_human.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -1,117 +1,117 @@
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	97.39	230	6	0	1	690	88	777	0.0	559
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	91.22	148	13	0	1046	603	1133	690	0.0	308
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	94.12	102	6	0	742	1047	829	1134	0.0	236
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	94.32	88	5	0	566	303	653	390	0.0	207
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	96.34	82	3	0	248	3	335	90	0.0	182
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	83.33	204	34	0	18	629	105	716	4e-158	404
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	75.28	89	22	0	780	1046	867	1133	4e-158	161
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	81.28	203	38	0	609	1	696	88	5e-153	360
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	80.60	67	13	0	916	716	1003	803	5e-153	135
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	70.27	37	11	0	1047	937	1134	1024	5e-153	64.2
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	100.00	7	0	0	646	626	733	713	5e-153	24.0
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	89.23	65	7	0	460	266	547	353	4e-105	167
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	89.58	48	5	0	184	41	271	128	4e-105	104
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	77.78	45	10	0	882	748	969	835	4e-105	93.9
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	67.86	28	9	0	1045	962	1132	1049	4e-105	51.9
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	59.09	22	9	0	586	521	673	608	4e-105	33.1
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	81.40	86	16	0	296	553	383	640	2e-87	185
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	84.38	32	5	0	11	106	98	193	2e-87	74.8
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	71.43	35	10	0	941	1045	1028	1132	2e-87	61.6
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	94.44	18	1	0	794	847	881	934	2e-87	50.1
-gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	83.61	238	39	0	18	731	64	777	0.0	507
-gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	82.35	85	15	0	783	1037	829	1083	0.0	188
-gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	70.96	303	88	0	925	17	971	63	2e-130	435
-gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	72.22	18	5	0	1027	974	1073	1020	2e-130	35.0
-gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	55.32	188	84	0	605	42	651	88	7e-89	245
-gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	61.11	72	28	0	1037	822	1083	868	7e-89	91.3
-gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	49.02	204	104	0	29	640	75	686	4e-78	197
-gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	66.04	53	18	0	860	1018	906	1064	4e-78	85.8
-gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	44.44	27	15	0	689	769	735	815	4e-78	32.2
-gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	47.47	198	104	0	633	40	679	86	4e-65	177
-gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	68.09	47	15	0	1017	877	1063	923	4e-65	80.3
-gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	57.89	114	48	0	265	606	311	652	3e-46	137
-gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	46.30	54	29	0	19	180	65	226	3e-46	52.4
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	96.40	111	4	0	1	333	118	450	0.0	264
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	92.31	65	5	0	3174	3368	829	1023	0.0	151
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	96.43	56	2	0	2855	3022	616	783	0.0	141
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	93.22	59	4	0	1404	1580	442	618	0.0	138
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	92.00	25	2	0	4222	4296	1021	1095	0.0	64.3
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	88.89	9	1	0	3128	3154	783	809	0.0	22.6
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	78.38	111	24	0	333	1	450	118	7e-171	212
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	88.75	80	9	0	3367	3128	1022	783	7e-171	161
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	93.33	60	4	0	1582	1403	620	441	7e-171	136
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	91.07	56	5	0	3021	2854	782	615	7e-171	119
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	84.62	26	4	0	4301	4224	1100	1023	7e-171	52.8
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	95.83	72	3	0	218	3	335	120	8e-142	152
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	77.78	63	14	0	3368	3180	1023	835	8e-142	125
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	85.11	47	7	0	1544	1404	582	442	8e-142	108
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	80.36	56	11	0	3022	2855	783	616	8e-142	101
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	75.86	29	7	0	325	239	442	356	8e-142	58.3
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	86.36	22	3	0	4287	4222	1086	1021	8e-142	48.7
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	90.91	11	1	0	3159	3127	814	782	8e-142	31.3
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	81.03	58	11	0	2854	3027	615	788	2e-122	128
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	83.33	60	10	0	1403	1582	441	620	2e-122	125
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	80.60	67	13	0	3	203	120	320	2e-122	119
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	91.30	23	2	0	4220	4288	1019	1087	2e-122	53.8
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	78.26	23	5	0	266	334	383	451	2e-122	48.3
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	80.00	20	4	0	3308	3367	963	1022	2e-122	46.0
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	83.33	18	3	0	3226	3279	881	934	2e-122	40.5
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	80.39	51	10	0	154	2	271	119	1e-92	97.3
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	73.68	57	15	0	3366	3196	1021	851	1e-92	95.9
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	81.82	44	8	0	1521	1390	559	428	1e-92	95.0
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	95.00	20	1	0	332	273	449	390	1e-92	52.4
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	86.36	22	3	0	4288	4223	1087	1022	1e-92	48.3
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	61.54	26	10	0	2912	2835	673	596	1e-92	37.7
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	69.57	23	7	0	3023	2955	784	716	1e-92	33.1
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	76.67	30	7	0	2	91	119	208	6e-43	68.0
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	91.11	45	4	0	1411	1545	449	583	6e-43	68.0
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	77.27	22	5	0	267	332	384	449	6e-43	45.1
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	86.36	22	3	0	4224	4289	1023	1088	6e-43	44.1
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	83.33	12	2	0	2856	2891	617	652	6e-43	25.4
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	95.91	220	9	0	1	660	118	777	0.0	526
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	92.13	89	7	0	712	978	829	1095	0.0	212
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	91.01	178	16	0	536	3	653	120	1e-178	353
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	88.32	137	16	0	983	573	1100	690	1e-178	277
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	77.43	319	72	0	3	959	120	1076	4e-174	593
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	79.07	129	27	0	558	172	675	289	2e-133	248
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	76.83	82	19	0	963	718	1080	835	2e-133	159
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	84.09	44	7	0	133	2	250	119	2e-133	97.3
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	73.08	78	21	0	433	200	550	317	6e-102	145
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	70.15	67	20	0	799	599	916	716	6e-102	106
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	80.49	41	8	0	123	1	240	118	6e-102	84.5
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	77.78	27	6	0	553	473	670	590	6e-102	51.9
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	71.43	14	4	0	889	848	1006	965	6e-102	32.7
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	81.82	11	2	0	958	926	1075	1043	6e-102	28.6
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	84.85	33	5	0	239	337	356	454	4e-48	72.5
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	86.67	30	4	0	2	91	119	208	4e-48	71.2
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	81.40	43	8	0	404	532	521	649	4e-48	47.3
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	88.89	18	2	0	764	817	881	934	4e-48	44.6
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	87.50	8	1	0	935	958	1052	1075	4e-48	21.7
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	93.91	230	14	0	1	690	88	777	0.0	538
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	88.83	188	21	0	566	3	653	90	0.0	394
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	84.06	138	22	0	1046	633	1133	720	0.0	260
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	91.18	102	9	0	742	1047	829	1134	0.0	233
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	67.11	228	75	0	684	1	771	88	7e-132	333
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	67.27	110	36	0	1045	716	1132	803	7e-132	141
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	70.20	151	45	0	3	455	90	542	1e-128	236
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	64.04	89	32	0	780	1046	867	1133	1e-128	136
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	66.22	74	25	0	510	731	597	818	1e-128	111
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	66.04	106	36	0	242	559	329	646	2e-58	161
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	85.71	21	3	0	92	154	179	241	2e-58	53.8
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	73.68	19	5	0	791	847	878	934	2e-58	39.1
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	61.29	62	24	0	424	239	511	326	4e-55	81.3
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	74.36	39	10	0	133	17	220	104	4e-55	69.8
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	65.71	35	12	0	882	778	969	865	4e-55	56.3
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	58.14	43	18	0	649	521	736	608	4e-55	50.6
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	66.67	12	4	0	972	937	1059	1024	4e-55	23.9
-gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	82.13	235	42	0	11	715	76	780	0.0	498
-gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	78.31	83	18	0	770	1018	835	1083	0.0	177
-gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	72.29	332	92	0	1017	22	1082	87	1e-150	516
-gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	48.30	147	76	0	712	272	777	337	2e-98	169
-gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	54.17	72	33	0	1030	815	1095	880	2e-98	103
-gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	47.83	69	36	0	220	14	285	79	2e-98	83.5
-gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	72.00	25	7	0	782	708	847	773	2e-98	45.1
-gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	56.00	75	33	0	532	756	597	821	5e-65	87.7
-gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	39.42	104	63	0	19	330	84	395	5e-65	86.8
-gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	56.90	58	25	0	829	1002	894	1067	5e-65	81.3
-gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	50.00	30	15	0	388	477	453	542	5e-65	33.6
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	97.391	230	6	0	1	690	88	777	0.0	559
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	91.216	148	13	0	1046	603	1133	690	0.0	308
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	94.118	102	6	0	742	1047	829	1134	0.0	236
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	94.318	88	5	0	566	303	653	390	0.0	207
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	96.341	82	3	0	248	3	335	90	0.0	182
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	83.333	204	34	0	18	629	105	716	3.86e-157	404
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	75.281	89	22	0	780	1046	867	1133	3.86e-157	161
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	81.281	203	38	0	609	1	696	88	4.54e-152	360
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	80.597	67	13	0	916	716	1003	803	4.54e-152	135
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	70.270	37	11	0	1047	937	1134	1024	4.54e-152	64.2
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	100.000	7	0	0	646	626	733	713	4.54e-152	24.0
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	89.231	65	7	0	460	266	547	353	3.01e-104	167
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	89.583	48	5	0	184	41	271	128	3.01e-104	104
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	77.778	45	10	0	882	748	969	835	3.01e-104	93.9
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	67.857	28	9	0	1045	962	1132	1049	3.01e-104	51.9
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	59.091	22	9	0	586	521	673	608	3.01e-104	33.1
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	81.395	86	16	0	296	553	383	640	1.91e-86	185
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	84.375	32	5	0	11	106	98	193	1.91e-86	74.8
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	71.429	35	10	0	941	1045	1028	1132	1.91e-86	61.6
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	94.444	18	1	0	794	847	881	934	1.91e-86	50.1
+gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	83.613	238	39	0	18	731	64	777	0.0	507
+gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	82.353	85	15	0	783	1037	829	1083	0.0	188
+gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	70.957	303	88	0	925	17	971	63	1.89e-129	435
+gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	72.222	18	5	0	1027	974	1073	1020	1.89e-129	35.0
+gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	55.319	188	84	0	605	42	651	88	6.62e-88	245
+gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	61.111	72	28	0	1037	822	1083	868	6.62e-88	91.3
+gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	49.020	204	104	0	29	640	75	686	3.93e-77	197
+gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	66.038	53	18	0	860	1018	906	1064	3.93e-77	85.8
+gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	44.444	27	15	0	689	769	735	815	3.93e-77	32.2
+gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	47.475	198	104	0	633	40	679	86	3.56e-64	177
+gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	68.085	47	15	0	1017	877	1063	923	3.56e-64	80.3
+gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	57.895	114	48	0	265	606	311	652	2.46e-45	137
+gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	46.296	54	29	0	19	180	65	226	2.46e-45	52.4
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	96.396	111	4	0	1	333	118	450	0.0	264
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	92.308	65	5	0	3174	3368	829	1023	0.0	151
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	96.429	56	2	0	2855	3022	616	783	0.0	141
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	93.220	59	4	0	1404	1580	442	618	0.0	138
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	92.000	25	2	0	4222	4296	1021	1095	0.0	64.3
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	88.889	9	1	0	3128	3154	783	809	0.0	22.6
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	78.378	111	24	0	333	1	450	118	6.23e-170	212
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	88.750	80	9	0	3367	3128	1022	783	6.23e-170	161
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	93.333	60	4	0	1582	1403	620	441	6.23e-170	136
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	91.071	56	5	0	3021	2854	782	615	6.23e-170	119
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	84.615	26	4	0	4301	4224	1100	1023	6.23e-170	52.8
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	95.833	72	3	0	218	3	335	120	6.53e-141	152
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	77.778	63	14	0	3368	3180	1023	835	6.53e-141	125
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	85.106	47	7	0	1544	1404	582	442	6.53e-141	108
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	80.357	56	11	0	3022	2855	783	616	6.53e-141	101
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	75.862	29	7	0	325	239	442	356	6.53e-141	58.3
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	86.364	22	3	0	4287	4222	1086	1021	6.53e-141	48.7
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	90.909	11	1	0	3159	3127	814	782	6.53e-141	31.3
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	81.034	58	11	0	2854	3027	615	788	1.44e-121	128
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	83.333	60	10	0	1403	1582	441	620	1.44e-121	125
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	80.597	67	13	0	3	203	120	320	1.44e-121	119
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	91.304	23	2	0	4220	4288	1019	1087	1.44e-121	53.8
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	78.261	23	5	0	266	334	383	451	1.44e-121	48.3
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	80.000	20	4	0	3308	3367	963	1022	1.44e-121	46.0
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	83.333	18	3	0	3226	3279	881	934	1.44e-121	40.5
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	80.392	51	10	0	154	2	271	119	1.19e-91	97.3
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	73.684	57	15	0	3366	3196	1021	851	1.19e-91	95.9
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	81.818	44	8	0	1521	1390	559	428	1.19e-91	95.0
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	95.000	20	1	0	332	273	449	390	1.19e-91	52.4
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	86.364	22	3	0	4288	4223	1087	1022	1.19e-91	48.3
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	61.538	26	10	0	2912	2835	673	596	1.19e-91	37.7
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	69.565	23	7	0	3023	2955	784	716	1.19e-91	33.1
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	76.667	30	7	0	2	91	119	208	5.03e-42	68.0
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	91.111	45	4	0	1411	1545	449	583	5.03e-42	68.0
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	77.273	22	5	0	267	332	384	449	5.03e-42	45.1
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	86.364	22	3	0	4224	4289	1023	1088	5.03e-42	44.1
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	83.333	12	2	0	2856	2891	617	652	5.03e-42	25.4
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	95.909	220	9	0	1	660	118	777	0.0	526
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	92.135	89	7	0	712	978	829	1095	0.0	212
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	91.011	178	16	0	536	3	653	120	1.13e-177	353
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	88.321	137	16	0	983	573	1100	690	1.13e-177	277
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	77.429	319	72	0	3	959	120	1076	3.27e-173	593
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	79.070	129	27	0	558	172	675	289	1.77e-132	248
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	76.829	82	19	0	963	718	1080	835	1.77e-132	159
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	84.091	44	7	0	133	2	250	119	1.77e-132	97.3
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	73.077	78	21	0	433	200	550	317	5.37e-101	145
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	70.149	67	20	0	799	599	916	716	5.37e-101	106
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	80.488	41	8	0	123	1	240	118	5.37e-101	84.5
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	77.778	27	6	0	553	473	670	590	5.37e-101	51.9
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	71.429	14	4	0	889	848	1006	965	5.37e-101	32.7
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	81.818	11	2	0	958	926	1075	1043	5.37e-101	28.6
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	84.848	33	5	0	239	337	356	454	3.28e-47	72.5
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	86.667	30	4	0	2	91	119	208	3.28e-47	71.2
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	81.395	43	8	0	404	532	521	649	3.28e-47	47.3
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	88.889	18	2	0	764	817	881	934	3.28e-47	44.6
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	87.500	8	1	0	935	958	1052	1075	3.28e-47	21.7
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	93.913	230	14	0	1	690	88	777	0.0	538
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	88.830	188	21	0	566	3	653	90	0.0	394
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	84.058	138	22	0	1046	633	1133	720	0.0	260
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	91.176	102	9	0	742	1047	829	1134	0.0	233
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	67.105	228	75	0	684	1	771	88	6.59e-131	333
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	67.273	110	36	0	1045	716	1132	803	6.59e-131	141
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	70.199	151	45	0	3	455	90	542	1.16e-127	236
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	64.045	89	32	0	780	1046	867	1133	1.16e-127	136
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	66.216	74	25	0	510	731	597	818	1.16e-127	111
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	66.038	106	36	0	242	559	329	646	1.70e-57	161
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	85.714	21	3	0	92	154	179	241	1.70e-57	53.8
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	73.684	19	5	0	791	847	878	934	1.70e-57	39.1
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	61.290	62	24	0	424	239	511	326	3.59e-54	81.3
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	74.359	39	10	0	133	17	220	104	3.59e-54	69.8
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	65.714	35	12	0	882	778	969	865	3.59e-54	56.3
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	58.140	43	18	0	649	521	736	608	3.59e-54	50.6
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	66.667	12	4	0	972	937	1059	1024	3.59e-54	23.9
+gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	82.128	235	42	0	11	715	76	780	0.0	498
+gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	78.313	83	18	0	770	1018	835	1083	0.0	177
+gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	72.289	332	92	0	1017	22	1082	87	1.28e-149	516
+gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	48.299	147	76	0	712	272	777	337	2.25e-97	169
+gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	54.167	72	33	0	1030	815	1095	880	2.25e-97	103
+gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	47.826	69	36	0	220	14	285	79	2.25e-97	83.5
+gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	72.000	25	7	0	782	708	847	773	2.25e-97	45.1
+gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	56.000	75	33	0	532	756	597	821	4.32e-64	87.7
+gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	39.423	104	63	0	19	330	84	395	4.32e-64	86.8
+gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	56.897	58	25	0	829	1002	894	1067	4.32e-64	81.3
+gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	50.000	30	15	0	388	477	453	542	4.32e-64	33.6
--- a/test-data/three_human_mRNA.dbinfo.txt	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/three_human_mRNA.dbinfo.txt	Wed Apr 19 05:27:19 2017 -0400
@@ -1,7 +1,7 @@
 Database: Just 3 human mRNA sequences
 	3 sequences; 10,732 total bases
 
-Date: Jul 4, 2015  3:35 PM	Longest sequence: 4,796 bases
+Date: Dec 2, 2016  10:38 AM	Longest sequence: 4,796 bases
 
 Volumes:
-	/mnt/galaxy/repositories/galaxy_blast/test-data/three_human_mRNA.fasta
+	/mnt/shared/users/pc40583/repositories/galaxy_blast/test-data/three_human_mRNA.fasta
--- a/test-data/three_human_mRNA.fasta.log.txt	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/three_human_mRNA.fasta.log.txt	Wed Apr 19 05:27:19 2017 -0400
@@ -1,5 +1,2 @@
 New DB title:  Just 3 human mRNA sequences
 Sequence type: Nucleotide
-Keep Linkouts: T
-Keep MBits: T
-Maximum file size: 1000000000B
Binary file test-data/three_human_mRNA.fasta.nin has changed
--- a/tools/ncbi_blast_plus/README.rst	Mon Nov 07 11:31:37 2016 -0500
+++ b/tools/ncbi_blast_plus/README.rst	Wed Apr 19 05:27:19 2017 -0400
@@ -7,8 +7,9 @@
 
 See the licence text below.
 
-Currently tested with NCBI BLAST+ 2.2.31, and does not work with the NCBI
-'legacy' BLAST suite (e.g. ``blastall``).
+Note this does not work with the NCBI 'legacy' BLAST suite written in C
+(e.g. binary name ``blastall``), but its replacement BLAST, which is
+written in C++ (e.g. binary name ``blastn``).
 
 Note that these wrappers (and the associated datatypes) were originally
 distributed as part of the main Galaxy repository, but as of August 2012
@@ -234,6 +235,13 @@
         - Set ``allow_duplicate_entries="False"`` in sample configuration file
 	  ``tool_data_table_conf.xml``.
         - Fix identifers with pipes in ``blastdbcmd`` wrapper (Devon Ryan).
+v0.2.00 - Updated for NCBI BLAST+ 2.5.0, where GI numbers are less visible,
+          tabular output changes with `-parse_deflines`, and percentage
+	  identifies are now given to 3dp rather than 2dp.
+        - Depends on ``package_blast_plus_2_5_0`` in ToolShed, or BioConda.
+        - ``blastxml_to_tabular`` now also gives percentage idenity to 3dp.
+        - Removed never-used binary and Python module dependency declarations
+          (internal change only).
 ======= ======================================================================
 
 
@@ -258,17 +266,17 @@
 Planemo commands (which requires you have set your Tool Shed access details in
 ``~/.planemo.yml`` and that you have access rights on the Tool Shed)::
 
-    $ planemo shed_update -t testtoolshed --check_diff ~/repositories/galaxy_blast/tools/ncbi_blast_plus/
+    $ planemo shed_update -t testtoolshed --check_diff tools/ncbi_blast_plus/
     ...
 
 or::
 
-    $ planemo shed_update -t toolshed --check_diff ~/repositories/galaxy_blast/tools/ncbi_blast_plus/
+    $ planemo shed_update -t toolshed --check_diff tools/ncbi_blast_plus/
     ...
 
 To just build and check the tar ball, use::
 
-    $ planemo shed_upload --tar_only  ~/repositories/galaxy_blast/tools/ncbi_blast_plus/
+    $ planemo shed_upload --tar_only tools/ncbi_blast_plus/
     ...
     $ tar -tzf shed_upload.tar.gz 
     test-data/blastdb.loc
--- a/tools/ncbi_blast_plus/blastxml_to_tabular.py	Mon Nov 07 11:31:37 2016 -0500
+++ b/tools/ncbi_blast_plus/blastxml_to_tabular.py	Wed Apr 19 05:27:19 2017 -0400
@@ -60,13 +60,16 @@
 However, check this with "diff -b ..." since BLAST+ sometimes includes an extra
 space character (probably a bug).
 """
-import sys
+
+
+import os
 import re
-import os
+import sys
+
 from optparse import OptionParser
 
 if "-v" in sys.argv or "--version" in sys.argv:
-    print "v0.1.08"
+    print "v0.2.00"
     sys.exit(0)
 
 if sys.version_info[:2] >= (2, 5):
@@ -75,7 +78,7 @@
     except ImportError:
         from xml.etree import ElementTree as ElementTree
 else:
-    from galaxy import eggs
+    from galaxy import eggs  # noqa - ignore flake8 F401
     import pkg_resources
     pkg_resources.require("elementtree")
     from elementtree import ElementTree
@@ -106,11 +109,16 @@
 'qseqid,sseqid,pident' (space or comma separated).
 """
 parser = OptionParser(usage=usage)
-parser.add_option('-o', '--output', dest='output', default=None, help='output filename (defaults to stdout)', metavar="FILE")
-parser.add_option("-c", "--columns", dest="columns", default='std', help="[std|ext|col1,col2,...] standard 12 columns, extended 25 columns, or list of column names")
+parser.add_option('-o', '--output', dest='output', default=None,
+                  help='output filename (defaults to stdout)',
+                  metavar="FILE")
+parser.add_option("-c", "--columns", dest="columns", default='std',
+                  help="[std|ext|col1,col2,...] standard 12 columns, extended 25 columns, or list of column names")
 (options, args) = parser.parse_args()
 
-colnames = 'qseqid,sseqid,pident,length,mismatch,gapopen,qstart,qend,sstart,send,evalue,bitscore,sallseqid,score,nident,positive,gaps,ppos,qframe,sframe,qseq,sseq,qlen,slen,salltitles'.split(',')
+colnames = ('qseqid,sseqid,pident,length,mismatch,gapopen,qstart,qend,'
+            'sstart,send,evalue,bitscore,sallseqid,score,nident,positive,'
+            'gaps,ppos,qframe,sframe,qseq,sseq,qlen,slen,salltitles').split(',')
 
 if len(args) < 1:
     sys.exit("ERROR: No BLASTXML input files given; run with --help to see options.")
@@ -176,7 +184,8 @@
         if event == "end" and elem.tag == "Iteration":
             # Expecting either this, from BLAST 2.2.25+ using FASTA vs FASTA
             # <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID>
-            # <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
+            # <Iteration_query-def>Endoplasmic reticulum resident protein 44
+            # OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
             # <Iteration_query-len>406</Iteration_query-len>
             # <Iteration_hits></Iteration_hits>
             #
@@ -206,17 +215,16 @@
                 #
                 # Or, with a local database not using -parse_seqids can get this,
                 # <Hit_id>gnl|BL_ORD_ID|2</Hit_id>
-                # <Hit_def>chrIII gi|240255695|ref|NC_003074.8| Arabidopsis thaliana chromosome 3, complete sequence</Hit_def>
+                # <Hit_def>chrIII gi|240255695|ref|NC_003074.8| Arabidopsis
+                # thaliana chromosome 3, complete sequence</Hit_def>
                 # <Hit_accession>2</Hit_accession>
                 sseqid = hit.findtext("Hit_id").split(None, 1)[0]
                 hit_def = sseqid + " " + hit.findtext("Hit_def")
-                if re_default_subject_id.match(sseqid) \
-                and sseqid == hit.findtext("Hit_accession"):
+                if re_default_subject_id.match(sseqid) and sseqid == hit.findtext("Hit_accession"):
                     # Place holder ID, take the first word of the subject definition
                     hit_def = hit.findtext("Hit_def")
                     sseqid = hit_def.split(None, 1)[0]
-                if sseqid.startswith("gnl|BL_ORD_ID|") \
-                and sseqid == "gnl|BL_ORD_ID|" + hit.findtext("Hit_accession"):
+                if sseqid.startswith("gnl|BL_ORD_ID|") and sseqid == "gnl|BL_ORD_ID|" + hit.findtext("Hit_accession"):
                     # Alternative place holder ID, again take the first word of hit_def
                     hit_def = hit.findtext("Hit_def")
                     sseqid = hit_def.split(None, 1)[0]
@@ -224,7 +232,8 @@
                 for hsp in hit.findall("Hit_hsps/Hsp"):
                     nident = hsp.findtext("Hsp_identity")
                     length = hsp.findtext("Hsp_align-len")
-                    pident = "%0.2f" % (100 * float(nident) / float(length))
+                    # As of NCBI BLAST+ 2.4.0 this is given to 3dp (not 2dp)
+                    pident = "%0.3f" % (100 * float(nident) / float(length))
 
                     q_seq = hsp.findtext("Hsp_qseq")
                     h_seq = hsp.findtext("Hsp_hseq")
@@ -233,13 +242,11 @@
                     gapopen = str(len(q_seq.replace('-', ' ').split()) - 1 +
                                   len(h_seq.replace('-', ' ').split()) - 1)
 
-                    mismatch = m_seq.count(' ') + m_seq.count('+') \
-                             - q_seq.count('-') - h_seq.count('-')
+                    mismatch = m_seq.count(' ') + m_seq.count('+') - q_seq.count('-') - h_seq.count('-')
                     # TODO - Remove this alternative mismatch calculation and test
                     # once satisifed there are no problems
-                    expected_mismatch = len(q_seq) \
-                                      - sum(1 for q, h in zip(q_seq, h_seq)
-                                            if q == h or q == "-" or h == "-")
+                    expected_mismatch = len(q_seq) - sum(1 for q, h in zip(q_seq, h_seq)
+                                                         if q == h or q == "-" or h == "-")
                     xx = sum(1 for q, h in zip(q_seq, h_seq) if q == "X" and h == "X")
                     if not (expected_mismatch - q_seq.count("X") <= int(mismatch) <= expected_mismatch + xx):
                         sys.exit("%s vs %s mismatches, expected %i <= %i <= %i"
--- a/tools/ncbi_blast_plus/check_no_duplicates.py	Mon Nov 07 11:31:37 2016 -0500
+++ b/tools/ncbi_blast_plus/check_no_duplicates.py	Wed Apr 19 05:27:19 2017 -0400
@@ -9,8 +9,9 @@
 will return a non-zero error if any duplicate identifiers
 are found.
 """
+
+import os
 import sys
-import os
 
 if "-v" in sys.argv or "--version" in sys.argv:
     print("v0.0.23")
--- a/tools/ncbi_blast_plus/ncbi_blastdbcmd_wrapper.xml	Mon Nov 07 11:31:37 2016 -0500
+++ b/tools/ncbi_blast_plus/ncbi_blastdbcmd_wrapper.xml	Wed Apr 19 05:27:19 2017 -0400
@@ -79,12 +79,13 @@
             <output name="seq" file="four_human_proteins.fasta" ftype="fasta" />
         </test>
         <test>
+            <!-- This used to recover the original FASTA file, but had GI numbers -->
             <param name="db_opts|db_type" value="nucl" />
             <param name="db_opts|database" value="rhodopsin_nucs" />
             <param name="id_opts|id_type" value="prompt" />
             <param name="id_opts|entries" value="all" />
             <param name="outfmt" value="original" />
-            <output name="seq" file="rhodopsin_nucs.fasta" ftype="fasta" />
+            <output name="seq" file="rhodopsin_nucs.no_gi.fasta" ftype="fasta" />
         </test>
         <test>
             <param name="db_opts|db_type" value="nucl" />
--- a/tools/ncbi_blast_plus/ncbi_macros.xml	Mon Nov 07 11:31:37 2016 -0500
+++ b/tools/ncbi_blast_plus/ncbi_macros.xml	Wed Apr 19 05:27:19 2017 -0400
@@ -1,13 +1,12 @@
 <macros>
-    <token name="@WRAPPER_VERSION@">0.1.08</token>
+    <token name="@WRAPPER_VERSION@">0.2.00</token>
     <xml name="parallelism">
         <!-- If job splitting is enabled, break up the query file into parts -->
         <parallelism method="multi" split_inputs="query" split_mode="to_size" split_size="1000" merge_outputs="output1" />
     </xml>
     <xml name="preamble">
         <requirements>
-            <requirement type="binary">@BINARY@</requirement>
-            <requirement type="package" version="2.2.31">blast+</requirement>
+            <requirement type="package" version="2.5.0">blast</requirement>
         </requirements>
         <stdio>
             <!-- Anything other than zero is an error -->
--- a/tools/ncbi_blast_plus/ncbi_tblastn_wrapper.xml	Mon Nov 07 11:31:37 2016 -0500
+++ b/tools/ncbi_blast_plus/ncbi_tblastn_wrapper.xml	Wed Apr 19 05:27:19 2017 -0400
@@ -110,7 +110,8 @@
             <output name="output1" file="tblastn_four_human_vs_rhodopsin.tabular" ftype="tabular" />
         </test>
         <test>
-            <!-- Same as above, but parse deflines - on BLAST 2.2.25+ - 2.2.27+ makes no difference -->
+            <!-- Same as above, but parse deflines -->
+            <!-- Note back on BLAST 2.2.25+ - 2.2.27+ made no difference -->
             <param name="query" value="four_human_proteins.fasta" ftype="fasta" />
             <param name="db_opts_selector" value="file" />
             <param name="subject" value="rhodopsin_nucs.fasta" ftype="fasta" />
@@ -123,9 +124,10 @@
             <param name="max_hits" value="0" />
             <param name="word_size" value="0" />
             <param name="parse_deflines" value="true" />
-            <output name="output1" file="tblastn_four_human_vs_rhodopsin.tabular" ftype="tabular" />
+            <output name="output1" file="tblastn_four_human_vs_rhodopsin_deflines.tabular" ftype="tabular" />
         </test>
         <test>
+            <!-- As of BLAST 2.5.0+ the full path appears twice, so get small diff -->
             <param name="query" value="four_human_proteins.fasta" ftype="fasta" />
             <param name="db_opts_selector" value="file" />
             <param name="subject" value="rhodopsin_nucs.fasta" ftype="fasta" />
@@ -138,7 +140,7 @@
             <param name="max_hits" value="0" />
             <param name="word_size" value="0" />
             <param name="parse_deflines" value="false" />
-            <output name="output1" file="tblastn_four_human_vs_rhodopsin.html" ftype="html" />
+            <output name="output1" file="tblastn_four_human_vs_rhodopsin.html" ftype="html" lines_diff="8" />
         </test>
     </tests>
     <help>
--- a/tools/ncbi_blast_plus/tool_dependencies.xml	Mon Nov 07 11:31:37 2016 -0500
+++ b/tools/ncbi_blast_plus/tool_dependencies.xml	Wed Apr 19 05:27:19 2017 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="blast+" version="2.2.31">
-        <repository changeset_revision="921d2963a177" name="package_blast_plus_2_2_31" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+    <package name="blast" version="2.5.0">
+        <repository changeset_revision="5dd2b68c7d04" name="package_blast_plus_2_5_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>