annotate tool_dependencies.xml @ 0:11735242a19e draft default tip

Imported from capsule None

<?xml version="1.0"?>
<tool_dependency>
  <package name="R" version="2.11.0">
      <repository changeset_revision="6e1b17857732" name="package_r_2_11_0" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="bioc_qvalue" version="1.34.0">
      <install version="1.0">
          <actions>
              <action type="download_file">http://bioconductor.org/packages/2.12/bioc/src/contrib/qvalue_1.34.0.tar.gz</action>
                <action type="set_environment_for_install">
                  <repository changeset_revision="6e1b17857732" name="package_r_2_11_0" owner="devteam" prior_installation_required="False" toolshed="http://toolshed.g2.bx.psu.edu">
                      <package name="R" version="2.11.0" />
                    </repository>
                </action>
                <action type="shell_command">export R_LIBS=$INSTALL_DIR &amp;&amp; R CMD INSTALL qvalue_1.34.0.tar.gz</action>
                <action type="set_environment">
                  <environment_variable action="prepend_to" name="R_LIBS">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        </readme>
    </package>
</tool_dependency>