annotate tool_dependencies.xml @ 1:4a49481f29e7 draft

Uploaded
author devteam
date Thu, 23 Oct 2014 10:51:08 -0400
parents 61e41d21cb6f
children 99a28567c3a3
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
61e41d21cb6f Uploaded tool dependency definition.
devteam
parents:
diff changeset
1 <?xml version="1.0"?>
61e41d21cb6f Uploaded tool dependency definition.
devteam
parents:
diff changeset
2 <tool_dependency>
1
4a49481f29e7 Uploaded
devteam
parents: 0
diff changeset
3 <package name="picard" version="1.122.0">
0
61e41d21cb6f Uploaded tool dependency definition.
devteam
parents:
diff changeset
4 <install version="1.0">
1
4a49481f29e7 Uploaded
devteam
parents: 0
diff changeset
5 <actions_group>
4a49481f29e7 Uploaded
devteam
parents: 0
diff changeset
6 <actions architecture="x86_64" os="linux">
4a49481f29e7 Uploaded
devteam
parents: 0
diff changeset
7 <action type="download_by_url">https://github.com/broadinstitute/picard/releases/download/1.122/picard-tools-1.122.zip</action>
4a49481f29e7 Uploaded
devteam
parents: 0
diff changeset
8 <action type="move_directory_files">
4a49481f29e7 Uploaded
devteam
parents: 0
diff changeset
9 <source_directory>.</source_directory>
4a49481f29e7 Uploaded
devteam
parents: 0
diff changeset
10 <destination_directory>$INSTALL_DIR</destination_directory>
4a49481f29e7 Uploaded
devteam
parents: 0
diff changeset
11 </action>
4a49481f29e7 Uploaded
devteam
parents: 0
diff changeset
12 </actions>
4a49481f29e7 Uploaded
devteam
parents: 0
diff changeset
13 <action type="set_environment">
4a49481f29e7 Uploaded
devteam
parents: 0
diff changeset
14 <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable>
0
61e41d21cb6f Uploaded tool dependency definition.
devteam
parents:
diff changeset
15 </action>
1
4a49481f29e7 Uploaded
devteam
parents: 0
diff changeset
16 </actions_group>
0
61e41d21cb6f Uploaded tool dependency definition.
devteam
parents:
diff changeset
17 </install>
61e41d21cb6f Uploaded tool dependency definition.
devteam
parents:
diff changeset
18 <readme>
1
4a49481f29e7 Uploaded
devteam
parents: 0
diff changeset
19 This picard package dependency is retrieved directly from https://github.com/broadinstitute/picard/releases
0
61e41d21cb6f Uploaded tool dependency definition.
devteam
parents:
diff changeset
20 </readme>
61e41d21cb6f Uploaded tool dependency definition.
devteam
parents:
diff changeset
21 </package>
61e41d21cb6f Uploaded tool dependency definition.
devteam
parents:
diff changeset
22 </tool_dependency>