Mercurial > repos > devteam > package_picard_1_56_0
comparison tool_dependencies.xml @ 2:99a28567c3a3 draft default tip
Uploaded correct tool dependency definition.
| author | devteam |
|---|---|
| date | Tue, 11 Nov 2014 15:19:25 -0500 |
| parents | 4a49481f29e7 |
| children |
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| 1:4a49481f29e7 | 2:99a28567c3a3 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="picard" version="1.122.0"> | 3 <package name="picard" version="1.56.0"> |
| 4 <install version="1.0"> | 4 <install version="1.0"> |
| 5 <actions_group> | 5 <actions> |
| 6 <actions architecture="x86_64" os="linux"> | 6 <action type="download_by_url">http://downloads.sourceforge.net/project/picard/picard-tools/1.56/picard-tools-1.56.zip</action> |
| 7 <action type="download_by_url">https://github.com/broadinstitute/picard/releases/download/1.122/picard-tools-1.122.zip</action> | 7 <action type="move_directory_files"> |
| 8 <action type="move_directory_files"> | 8 <source_directory>picard-tools-1.56</source_directory> |
| 9 <source_directory>.</source_directory> | 9 <destination_directory>$INSTALL_DIR/jars</destination_directory> |
| 10 <destination_directory>$INSTALL_DIR</destination_directory> | 10 </action> |
| 11 </action> | |
| 12 </actions> | |
| 13 <action type="set_environment"> | 11 <action type="set_environment"> |
| 14 <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable> | 12 <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR/jars</environment_variable> |
| 15 </action> | 13 </action> |
| 16 </actions_group> | 14 </actions> |
| 17 </install> | 15 </install> |
| 18 <readme> | 16 <readme> |
| 19 This picard package dependency is retrieved directly from https://github.com/broadinstitute/picard/releases | |
| 20 </readme> | 17 </readme> |
| 21 </package> | 18 </package> |
| 22 </tool_dependency> | 19 </tool_dependency> |