Mercurial > repos > devteam > package_r_2_15_0
changeset 3:6a72f1ba7293 draft
Uploaded tool dependency definition that attempts to download a precompiled binary.
| author | devteam |
|---|---|
| date | Fri, 07 Mar 2014 11:08:34 -0500 |
| parents | e1c7a7cda956 |
| children | 6c34eaa82fed |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 90 insertions(+), 21 deletions(-) [+] |
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--- a/tool_dependencies.xml Mon Feb 24 16:40:45 2014 -0500 +++ b/tool_dependencies.xml Fri Mar 07 11:08:34 2014 -0500 @@ -1,28 +1,97 @@ <?xml version="1.0"?> <tool_dependency> - <package name="readline" version="6.2"> - <repository changeset_revision="16fc64dad9ca" name="package_readline_6_2" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> - </package> <package name="R" version="2.15.0"> - <install version="1.0"> - <actions> - <action type="download_by_url">http://cran.rstudio.com/src/base/R-2/R-2.15.0.tar.gz</action> - <action type="set_environment_for_install"> - <repository changeset_revision="16fc64dad9ca" name="package_readline_6_2" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu"> - <package name="readline" version="6.2" /> - </repository> + <install version="1.0"> + <actions_group> + <actions architecture="x86_64" os="darwin"> + <action type="download_by_url">http://depot.galaxyproject.org/package/darwin/x86_64/R/R-2.15.0-Darwin-x86_64.tgz</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + </actions> + <actions architecture="x86_64" os="linux"> + <action type="download_by_url">http://depot.galaxyproject.org/package/linux/x86_64/R/R-2.15.0-Linux-x86_64.tgz</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + <action type="set_environment"> + <environment_variable action="set_to" name="TCL_LIBRARY">$INSTALL_DIR/lib/libtcl8.4.so</environment_variable> + <environment_variable action="set_to" name="TK_LIBRARY">$INSTALL_DIR/lib/libtk8.4.so</environment_variable> + </action> + </actions> + <actions> + <package name="readline" version="6.2"> + <repository changeset_revision="16fc64dad9ca" name="package_readline_6_2" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> + </package> + <package name="libpng" version="1.6.7"> + <repository changeset_revision="7c4a9189b712" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> + </package> + <package name="cairo" version="1.12.14"> + <repository changeset_revision="7f467a4010e0" name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> + </package> + <package name="pixman" version="0.32.4"> + <repository changeset_revision="3d44a209a6b9" name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> + </package> + <package name="freetype" version="2.5.2"> + <repository changeset_revision="92d1906a12e4" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> + </package> + <action type="download_by_url">http://cran.rstudio.com/src/base/R-2/R-2.15.0.tar.gz</action> + <action type="set_environment_for_install"> + <repository changeset_revision="16fc64dad9ca" name="package_readline_6_2" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu"> + <package name="readline" version="6.2" /> + </repository> + <repository changeset_revision="7c4a9189b712" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu"> + <package name="libpng" version="1.6.7" /> + </repository> + <repository changeset_revision="7f467a4010e0" name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu"> + <package name="cairo" version="1.12.14" /> + </repository> + <repository changeset_revision="3d44a209a6b9" name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu"> + <package name="pixman" version="0.32.4" /> + </repository> + <repository changeset_revision="92d1906a12e4" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu"> + <package name="freetype" version="2.5.2" /> + </repository> + </action> + <action type="shell_command"> + export LDFLAGS="-L$PNG_LIBS -L$READLINE_LIBS" && + export LDFLAGS="$LDFLAGS -Wl,-rpath,$READLINE_LIBS" && + export LDFLAGS="$LDFLAGS -Wl,-rpath,$PIXMAN_LIB_PATH" && + export LDFLAGS="$LDFLAGS -Wl,-rpath,$PNG_LIB_PATH" && + export LDFLAGS="$LDFLAGS -Wl,-rpath,$FREETYPE_LIB_PATH" && + export CFLAGS="-I$PNG_INCLUDES -I$READLINE_INCLUDES" && + export CXXFLAGS="-I$PNG_INCLUDES -I$READLINE_INCLUDES" && + export CPPFLAGS="-I$PNG_INCLUDES -I$READLINE_INCLUDES" && + ./configure --with-tcltk \ + --with-blas \ + --with-lapack \ + --with-readline \ + --with-cairo \ + --with-libpng \ + --without-x \ + --enable-R-shlib \ + --disable-R-framework \ + --libdir=$INSTALL_DIR/lib \ + --prefix=$INSTALL_DIR + </action> + <action type="make_install" /> + <action type="shell_command">sed -i.bak 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/bin/R</action> + <action type="shell_command">sed -i.bak 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/lib/R/bin/R</action> + </actions> + <action type="set_environment"> + <environment_variable action="set_to" name="R_ROOT_DIR">$INSTALL_DIR</environment_variable> + <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable> + <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> </action> - <action type="make_directory">$INSTALL_DIR</action> - <action type="shell_command">export LDFLAGS="-L$READLINE_LIBS" && ./configure --with-blas --with-lapack --enable-R-shlib --with-x=no --prefix=$INSTALL_DIR && make && make install</action> - <action type="set_environment"> - <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable> - <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable> - <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/lib/R/bin</environment_variable> - </action> - </actions> + </actions_group> </install> - <readme>R is a free software environment for statistical computing and graphics - WARNING: See custom compilation options above - </readme> + <readme> + The precompiled versions of this package were built 2014-03-06. + R is a free software environment for statistical computing and graphics. + NOTE: See custom compilation options above. + </readme> </package> </tool_dependency>