comparison test-data/samtools_flagstat_out1.tsv @ 7:fe34990e5ce7 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
author iuc
date Tue, 28 Sep 2021 16:13:41 +0000
parents
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comparison
equal deleted inserted replaced
6:22970df7a40e 7:fe34990e5ce7
1 200 0 total (QC-passed reads + QC-failed reads)
2 200 0 primary
3 0 0 secondary
4 0 0 supplementary
5 0 0 duplicates
6 0 0 primary duplicates
7 25 0 mapped
8 12.50% N/A mapped %
9 25 0 primary mapped
10 12.50% N/A primary mapped %
11 200 0 paired in sequencing
12 100 0 read1
13 100 0 read2
14 0 0 properly paired
15 0.00% N/A properly paired %
16 0 0 with itself and mate mapped
17 25 0 singletons
18 12.50% N/A singletons %
19 0 0 with mate mapped to a different chr
20 0 0 with mate mapped to a different chr (mapQ>=5)