Mercurial > repos > devteam > samtools_flagstat
comparison test-data/samtools_flagstat_out1.tsv @ 7:fe34990e5ce7 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
| author | iuc |
|---|---|
| date | Tue, 28 Sep 2021 16:13:41 +0000 |
| parents | |
| children |
comparison
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| 6:22970df7a40e | 7:fe34990e5ce7 |
|---|---|
| 1 200 0 total (QC-passed reads + QC-failed reads) | |
| 2 200 0 primary | |
| 3 0 0 secondary | |
| 4 0 0 supplementary | |
| 5 0 0 duplicates | |
| 6 0 0 primary duplicates | |
| 7 25 0 mapped | |
| 8 12.50% N/A mapped % | |
| 9 25 0 primary mapped | |
| 10 12.50% N/A primary mapped % | |
| 11 200 0 paired in sequencing | |
| 12 100 0 read1 | |
| 13 100 0 read2 | |
| 14 0 0 properly paired | |
| 15 0.00% N/A properly paired % | |
| 16 0 0 with itself and mate mapped | |
| 17 25 0 singletons | |
| 18 12.50% N/A singletons % | |
| 19 0 0 with mate mapped to a different chr | |
| 20 0 0 with mate mapped to a different chr (mapQ>=5) |