diff test-data/samtools_flagstat_out1.json @ 7:fe34990e5ce7 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 0f75269223c0821c6c82acf98fde947d0f816f2b"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/samtools_flagstat_out1.json	Tue Sep 28 16:13:41 2021 +0000
@@ -0,0 +1,46 @@
+{
+ "QC-passed reads": { 
+  "total": 200, 
+  "primary": 200, 
+  "secondary": 0, 
+  "supplementary": 0, 
+  "duplicates": 0, 
+  "primary duplicates": 0, 
+  "mapped": 25, 
+  "mapped %": 12.50, 
+  "primary mapped": 25, 
+  "primary mapped %": 12.50, 
+  "paired in sequencing": 200, 
+  "read1": 100, 
+  "read2": 100, 
+  "properly paired": 0, 
+  "properly paired %": 0.00, 
+  "with itself and mate mapped": 0, 
+  "singletons": 25, 
+  "singletons %": 12.50, 
+  "with mate mapped to a different chr": 0, 
+  "with mate mapped to a different chr (mapQ >= 5)": 0 
+ },
+ "QC-failed reads": { 
+  "total": 0, 
+  "primary": 0, 
+  "secondary": 0, 
+  "supplementary": 0, 
+  "duplicates": 0, 
+  "primary duplicates": 0, 
+  "mapped": 0, 
+  "mapped %": null, 
+  "primary mapped": 0, 
+  "primary mapped %": null, 
+  "paired in sequencing": 0, 
+  "read1": 0, 
+  "read2": 0, 
+  "properly paired": 0, 
+  "properly paired %": null, 
+  "with itself and mate mapped": 0, 
+  "singletons": 0, 
+  "singletons %": null, 
+  "with mate mapped to a different chr": 0, 
+  "with mate mapped to a different chr (mapQ >= 5)": 0 
+ }
+}