annotate test-data/samtools_flagstat_out1.json @ 7:fe34990e5ce7 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 0f75269223c0821c6c82acf98fde947d0f816f2b"

{
 "QC-passed reads": { 
  "total": 200, 
  "primary": 200, 
  "secondary": 0, 
  "supplementary": 0, 
  "duplicates": 0, 
  "primary duplicates": 0, 
  "mapped": 25, 
  "mapped %": 12.50, 
  "primary mapped": 25, 
  "primary mapped %": 12.50, 
  "paired in sequencing": 200, 
  "read1": 100, 
  "read2": 100, 
  "properly paired": 0, 
  "properly paired %": 0.00, 
  "with itself and mate mapped": 0, 
  "singletons": 25, 
  "singletons %": 12.50, 
  "with mate mapped to a different chr": 0, 
  "with mate mapped to a different chr (mapQ >= 5)": 0 
 },
 "QC-failed reads": { 
  "total": 0, 
  "primary": 0, 
  "secondary": 0, 
  "supplementary": 0, 
  "duplicates": 0, 
  "primary duplicates": 0, 
  "mapped": 0, 
  "mapped %": null, 
  "primary mapped": 0, 
  "primary mapped %": null, 
  "paired in sequencing": 0, 
  "read1": 0, 
  "read2": 0, 
  "properly paired": 0, 
  "properly paired %": null, 
  "with itself and mate mapped": 0, 
  "singletons": 0, 
  "singletons %": null, 
  "with mate mapped to a different chr": 0, 
  "with mate mapped to a different chr (mapQ >= 5)": 0 
 }
}