Mercurial > repos > devteam > samtools_flagstat

changeset 5:db17d5321bad draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit ca0d1d44099fd21e0f8214102f4d8a2fd2d054d6
author iuc
date Mon, 29 Jul 2019 08:48:13 -0400
parents 4e404acfafa6
children 22970df7a40e
files samtools_flagstat.xml
diffstat 1 files changed, 2 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/samtools_flagstat.xml	Thu Sep 27 09:01:18 2018 -0400
+++ b/samtools_flagstat.xml	Mon Jul 29 08:48:13 2019 -0400
@@ -9,7 +9,8 @@
     <expand macro="version_command"/>
 
     <command><![CDATA[
-        samtools flagstat '$input1' > '$output1'
+    @ADDTHREADS@
+    samtools flagstat -@ \$addthreads '$input1' > '$output1'
     ]]></command>
 
     <inputs>