Mercurial > repos > devteam > samtools_idxstats
comparison samtools_idxstats.xml @ 3:811fc2d75ad4 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_idxstats commit ca0d1d44099fd21e0f8214102f4d8a2fd2d054d6
| author | iuc |
|---|---|
| date | Mon, 29 Jul 2019 08:48:46 -0400 |
| parents | 04d5581db1f5 |
| children | 7a6034296ae9 |
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| 2:04d5581db1f5 | 3:811fc2d75ad4 |
|---|---|
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements"/> | 6 <expand macro="requirements"/> |
| 7 <expand macro="stdio"/> | 7 <expand macro="stdio"/> |
| 8 <expand macro="version_command"/> | 8 <expand macro="version_command"/> |
| 9 <command><![CDATA[ | 9 <command><![CDATA[ |
| 10 @PREPARE_IDX@ | 10 @ADDTHREADS@ |
| 11 samtools idxstats infile > '${output}' | 11 @PREPARE_IDX@ |
| 12 samtools idxstats -@ \$addthreads infile > '${output}' | |
| 12 ]]></command> | 13 ]]></command> |
| 13 <inputs> | 14 <inputs> |
| 14 <param name="input" type="data" format="bam,cram" label="BAM file" /> | 15 <param name="input" type="data" format="bam,cram" label="BAM file" /> |
| 15 </inputs> | 16 </inputs> |
| 16 <outputs> | 17 <outputs> |