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changeset 3:811fc2d75ad4 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_idxstats commit ca0d1d44099fd21e0f8214102f4d8a2fd2d054d6
author iuc
date Mon, 29 Jul 2019 08:48:46 -0400
parents 04d5581db1f5
children 7a6034296ae9
files samtools_idxstats.xml
diffstat 1 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/samtools_idxstats.xml	Thu Sep 27 09:03:08 2018 -0400
+++ b/samtools_idxstats.xml	Mon Jul 29 08:48:46 2019 -0400
@@ -7,8 +7,9 @@
     <expand macro="stdio"/>
     <expand macro="version_command"/>
     <command><![CDATA[
-        @PREPARE_IDX@
-        samtools idxstats infile > '${output}'
+@ADDTHREADS@
+@PREPARE_IDX@
+samtools idxstats -@ \$addthreads infile  > '${output}'
     ]]></command>
     <inputs>
         <param name="input" type="data" format="bam,cram" label="BAM file" />