comparison snpFreq2.pl @ 1:5c3ac057608b draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/hgv/snpfreq commit a1517c9d22029095120643bbe2c8fa53754dd2b7

0:72ea0d13dd66

      chomp;
      if (/^(\d+)\s/) { push(@g2, $1); }
   }
   close FH or die "Couldn't close $grpFile, $!\n";
   if ($file =~ /.gz$/) { 
      open(FH, "zcat $file |") or die "Couldn't read $file, $!\n";
   }else {
      open(FH, $file) or die "Couldn't read $file, $!\n";
   }
   open(OUT, ">", "snpTable.txt") or die "Couldn't open snpTable.txt, $!\n";
   my $size;

1:5c3ac057608b

      chomp;
      if (/^(\d+)\s/) { push(@g2, $1); }
   }
   close FH or die "Couldn't close $grpFile, $!\n";
   if ($file =~ /.gz$/) { 
      open(FH, "zcat < $file |") or die "Couldn't read $file, $!\n";
   }else {
      open(FH, $file) or die "Couldn't read $file, $!\n";
   }
   open(OUT, ">", "snpTable.txt") or die "Couldn't open snpTable.txt, $!\n";
   my $size;