changeset 1:5c3ac057608b draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/hgv/snpfreq commit a1517c9d22029095120643bbe2c8fa53754dd2b7
author devteam
date Wed, 11 Nov 2015 12:50:35 -0500
parents 72ea0d13dd66
children
files snpFreq2.pl tool_dependencies.xml
diffstat 2 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/snpFreq2.pl	Mon Jul 28 11:56:46 2014 -0400
+++ b/snpFreq2.pl	Wed Nov 11 12:50:35 2015 -0500
@@ -90,7 +90,7 @@
    }
    close FH or die "Couldn't close $grpFile, $!\n";
    if ($file =~ /.gz$/) { 
-      open(FH, "zcat $file |") or die "Couldn't read $file, $!\n";
+      open(FH, "zcat < $file |") or die "Couldn't read $file, $!\n";
    }else {
       open(FH, $file) or die "Couldn't read $file, $!\n";
    }
--- a/tool_dependencies.xml	Mon Jul 28 11:56:46 2014 -0400
+++ b/tool_dependencies.xml	Wed Nov 11 12:50:35 2015 -0500
@@ -1,9 +1,9 @@
 <?xml version="1.0"?>
 <tool_dependency>
   <package name="bioc_qvalue" version="1.34.0">
-      <repository changeset_revision="11735242a19e" name="package_bioc_qvalue_1_34_0" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
+      <repository changeset_revision="11735242a19e" name="package_bioc_qvalue_1_34_0" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="R" version="2.11.0">
-      <repository changeset_revision="5824d2b3bc8b" name="package_r_2_11_0" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
+      <repository changeset_revision="5824d2b3bc8b" name="package_r_2_11_0" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>