changeset 0:5bc2dacbe729

Imported from capsule None
author devteam
date Tue, 01 Apr 2014 10:52:51 -0400
parents
children 7bf44b9d7a8b
files gops_subtract.py operation_filter.py subtract.xml test-data/1.bed test-data/2.bed test-data/2_mod.bed test-data/gops-subtract-p.dat test-data/gops-subtract.dat test-data/gops_subtract_bigint.bed test-data/gops_subtract_diffCols.dat test-data/gops_subtract_in1.gff test-data/gops_subtract_in2.bed test-data/gops_subtract_in2.gff test-data/gops_subtract_out1.gff tool_dependencies.xml utils/__init__.py utils/gff_util.py utils/odict.py
diffstat 17 files changed, 2727 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/gops_subtract.py	Tue Apr 01 10:52:51 2014 -0400
@@ -0,0 +1,96 @@
+#!/usr/bin/env python
+"""
+Find regions of first interval file that do not overlap regions in a second
+interval file. Interval files can either be BED or GFF format.
+
+usage: %prog interval_file_1 interval_file_2 out_file
+    -1, --cols1=N,N,N,N: Columns for start, end, strand in first file
+    -2, --cols2=N,N,N,N: Columns for start, end, strand in second file
+    -m, --mincols=N: Require this much overlap (default 1bp)
+    -p, --pieces: just print pieces of second set (after padding)
+    -G, --gff1: input 1 is GFF format, meaning start and end coordinates are 1-based, closed interval
+    -H, --gff2: input 2 is GFF format, meaning start and end coordinates are 1-based, closed interval
+"""
+import sys, traceback, fileinput
+from warnings import warn
+from bx.intervals import *
+from bx.intervals.io import *
+from bx.intervals.operations.subtract import *
+from bx.cookbook import doc_optparse
+from galaxy.tools.util.galaxyops import *
+from utils.gff_util import GFFFeature, GFFReaderWrapper, convert_bed_coords_to_gff
+
+assert sys.version_info[:2] >= ( 2, 4 )
+
+def main():
+    mincols = 1
+    upstream_pad = 0
+    downstream_pad = 0
+
+    options, args = doc_optparse.parse( __doc__ )
+    try:
+        chr_col_1, start_col_1, end_col_1, strand_col_1 = parse_cols_arg( options.cols1 )
+        chr_col_2, start_col_2, end_col_2, strand_col_2 = parse_cols_arg( options.cols2 )      
+        if options.mincols: mincols = int( options.mincols )
+        pieces = bool( options.pieces )
+        in1_gff_format = bool( options.gff1 )
+        in2_gff_format = bool( options.gff2 )
+        in_fname, in2_fname, out_fname = args
+    except:
+        doc_optparse.exception()
+
+    # Set readers to handle either GFF or default format.
+    if in1_gff_format:
+        in1_reader_wrapper = GFFReaderWrapper
+    else:
+        in1_reader_wrapper = NiceReaderWrapper
+    if in2_gff_format:
+        in2_reader_wrapper = GFFReaderWrapper
+    else:
+        in2_reader_wrapper = NiceReaderWrapper
+        
+    g1 = in1_reader_wrapper( fileinput.FileInput( in_fname ),
+                            chrom_col=chr_col_1,
+                            start_col=start_col_1,
+                            end_col=end_col_1,
+                            strand_col=strand_col_1,
+                            fix_strand=True )
+    if in1_gff_format:
+        # Subtract requires coordinates in BED format.
+        g1.convert_to_bed_coord=True
+        
+    g2 = in2_reader_wrapper( fileinput.FileInput( in2_fname ),
+                            chrom_col=chr_col_2,
+                            start_col=start_col_2,
+                            end_col=end_col_2,
+                            strand_col=strand_col_2,
+                            fix_strand=True )
+    if in2_gff_format:
+        # Subtract requires coordinates in BED format.
+        g2.convert_to_bed_coord=True
+        
+    out_file = open( out_fname, "w" )
+    try:
+        for feature in subtract( [g1,g2], pieces=pieces, mincols=mincols ):
+            if isinstance( feature, GFFFeature ):
+                # Convert back to GFF coordinates since reader converted automatically.
+                convert_bed_coords_to_gff( feature )
+                for interval in feature.intervals:
+                    out_file.write( "%s\n" % "\t".join( interval.fields ) )
+            elif isinstance( feature, GenomicInterval ):
+                out_file.write( "%s\n" % "\t".join( feature.fields ) )
+            else:
+                out_file.write( "%s\n" % feature )
+    except ParseError, exc:
+        out_file.close()
+        fail( "Invalid file format: %s" % str( exc ) )
+
+    out_file.close()
+
+    if g1.skipped > 0:
+        print skipped( g1, filedesc=" of 2nd dataset" )
+    if g2.skipped > 0:
+        print skipped( g2, filedesc=" of 1st dataset" )
+
+if __name__ == "__main__":
+    main()
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/operation_filter.py	Tue Apr 01 10:52:51 2014 -0400
@@ -0,0 +1,99 @@
+# runs after the job (and after the default post-filter)
+import os
+from galaxy import eggs
+from galaxy import jobs
+from galaxy.tools.parameters import DataToolParameter
+
+from galaxy.jobs.handler import JOB_ERROR
+
+# Older py compatibility
+try:
+    set()
+except:
+    from sets import Set as set
+
+#def exec_before_process(app, inp_data, out_data, param_dict, tool=None):
+#    """Sets the name of the data"""
+#    dbkeys = sets.Set( [data.dbkey for data in inp_data.values() ] ) 
+#    if len(dbkeys) != 1:
+#        raise Exception, '<p><font color="yellow">Both Queries must be from the same genome build</font></p>'
+
+def validate_input( trans, error_map, param_values, page_param_map ):
+    dbkeys = set()
+    data_param_names = set()
+    data_params = 0
+    for name, param in page_param_map.iteritems():
+        if isinstance( param, DataToolParameter ):
+            # for each dataset parameter
+            if param_values.get(name, None) != None:
+                dbkeys.add( param_values[name].dbkey )
+                data_params += 1
+                # check meta data
+                try:
+                    param = param_values[name]
+                    if isinstance( param.datatype, trans.app.datatypes_registry.get_datatype_by_extension( 'gff' ).__class__ ):
+                        # TODO: currently cannot validate GFF inputs b/c they are not derived from interval.
+                        pass
+                    else: # Validate interval datatype.
+                        startCol = int( param.metadata.startCol )
+                        endCol = int( param.metadata.endCol )
+                        chromCol = int( param.metadata.chromCol )
+                        if param.metadata.strandCol is not None:
+                            strandCol = int ( param.metadata.strandCol )
+                        else:
+                            strandCol = 0
+                except:
+                    error_msg = "The attributes of this dataset are not properly set. " + \
+                    "Click the pencil icon in the history item to set the chrom, start, end and strand columns."
+                    error_map[name] = error_msg
+            data_param_names.add( name )
+    if len( dbkeys ) > 1:
+        for name in data_param_names:
+            error_map[name] = "All datasets must belong to same genomic build, " \
+                "this dataset is linked to build '%s'" % param_values[name].dbkey
+    if data_params != len(data_param_names):
+        for name in data_param_names:
+            error_map[name] = "A dataset of the appropriate type is required"
+
+# Commented out by INS, 5/30/2007.  What is the PURPOSE of this?
+def exec_after_process(app, inp_data, out_data, param_dict, tool=None, stdout=None, stderr=None):
+    """Verify the output data after each run"""
+    items = out_data.items()
+
+    for name, data in items:
+        try:
+            if stderr and len( stderr ) > 0:
+                raise Exception( stderr )
+
+        except Exception, exc:
+            data.blurb = JOB_ERROR
+            data.state = JOB_ERROR
+
+## def exec_after_process(app, inp_data, out_data, param_dict, tool=None, stdout=None, stderr=None):
+##     pass
+
+
+def exec_after_merge(app, inp_data, out_data, param_dict, tool=None, stdout=None, stderr=None):
+    exec_after_process(
+        app, inp_data, out_data, param_dict, tool=tool, stdout=stdout, stderr=stderr)
+
+    # strip strand column if clusters were merged
+    items = out_data.items()
+    for name, data in items:
+        if param_dict['returntype'] == True:
+            data.metadata.chromCol = 1
+            data.metadata.startCol = 2
+            data.metadata.endCol = 3
+        # merge always clobbers strand
+        data.metadata.strandCol = None
+            
+
+def exec_after_cluster(app, inp_data, out_data, param_dict, tool=None, stdout=None, stderr=None):
+    exec_after_process(
+        app, inp_data, out_data, param_dict, tool=tool, stdout=stdout, stderr=stderr)
+
+    # strip strand column if clusters were merged
+    if param_dict["returntype"] == '1':
+        items = out_data.items()
+        for name, data in items:
+            data.metadata.strandCol = None
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/subtract.xml	Tue Apr 01 10:52:51 2014 -0400
@@ -0,0 +1,128 @@
+<tool id="gops_subtract_1" name="Subtract" version="0.0.1">
+  <description>the intervals of two datasets</description>
+  <requirements>
+    <requirement type="package" version="0.7.1">bx-python</requirement>
+    <requirement type="package" version="1.0.0">galaxy-ops</requirement>
+  </requirements>
+  <command interpreter="python">gops_subtract.py 
+      $input1 $input2 $output
+
+      #if isinstance( $input1.datatype, $__app__.datatypes_registry.get_datatype_by_extension('gff').__class__):
+        -1 1,4,5,7 --gff1
+      #else:
+        -1 ${input1.metadata.chromCol},${input1.metadata.startCol},${input1.metadata.endCol},${input1.metadata.strandCol}
+      #end if
+
+      #if isinstance( $input2.datatype, $__app__.datatypes_registry.get_datatype_by_extension('gff').__class__):
+        -2 1,4,5,7 --gff2
+      #else:
+          -2 ${input2.metadata.chromCol},${input2.metadata.startCol},${input2.metadata.endCol},${input2.metadata.strandCol} 
+      #end if
+
+      -m $min $returntype
+  </command>
+  <inputs>
+    <param format="interval,gff" name="input2" type="data" help="Second dataset">
+      <label>Subtract</label>
+    </param>
+
+    <param format="interval,gff" name="input1" type="data" help="First dataset">
+      <label>from</label>
+    </param>
+
+    <param name="returntype" type="select" label="Return" help="of the first dataset (see figure below)">
+      <option value="">Intervals with no overlap</option>
+      <option value="-p">Non-overlapping pieces of intervals</option>
+    </param>
+    
+    <param name="min" size="4" type="integer" value="1" min="1" help="(bp)">
+      <label>where minimal overlap is</label>
+    </param>
+   </inputs>
+  <outputs>
+    <data format="input" name="output" metadata_source="input1"/>
+  </outputs>
+  <code file="operation_filter.py"/>
+  <trackster_conf/>
+  <tests>
+    <test>
+      <param name="input1" value="1.bed" />
+      <param name="input2" value="2.bed" />
+      <param name="min" value="1" />
+      <param name="returntype" value="" />
+      <output name="output" file="gops-subtract.dat" />
+    </test>
+    <test>
+      <param name="input1" value="1.bed" />
+      <param name="input2" value="2_mod.bed" ftype="interval"/>
+      <param name="min" value="1" />
+      <param name="returntype" value="" />
+      <output name="output" file="gops_subtract_diffCols.dat" />
+    </test>
+    <test>
+      <param name="input1" value="gops_subtract_bigint.bed" />
+      <param name="input2" value="2.bed" />
+      <param name="min" value="1" />
+      <param name="returntype" value="" />
+      <output name="output" file="gops-subtract.dat" />
+    </test>
+    <test>
+      <param name="input1" value="1.bed" />
+      <param name="input2" value="2.bed" />
+      <param name="min" value="10" />
+      <param name="returntype" value="Non-overlapping pieces of intervals" />
+      <output name="output" file="gops-subtract-p.dat" />     
+    </test>
+    <!-- Subtract two GFF files. -->
+    <test>
+        <param name="input1" value="gops_subtract_in1.gff" />
+        <param name="input2" value="gops_subtract_in2.gff" />
+        <param name="min" value="1" />
+        <param name="returntype" value="" />
+        <output name="output" file="gops_subtract_out1.gff" />
+    </test>
+    <!-- Subtract BED file from GFF file. -->
+    <test>
+        <param name="input1" value="gops_subtract_in1.gff" />
+        <param name="input2" value="gops_subtract_in2.bed" />
+        <param name="min" value="1" />
+        <param name="returntype" value="" />
+        <output name="output" file="gops_subtract_out1.gff" />
+    </test>
+  </tests>
+  <help>
+
+.. class:: infomark
+
+**TIP:** If your dataset does not appear in the pulldown menu, it means that it is not in interval format. Use "edit attributes" to set chromosome, start, end, and strand columns.
+
+-----
+
+**Screencasts!**
+
+See Galaxy Interval Operation Screencasts_ (right click to open this link in another window).
+
+.. _Screencasts: http://wiki.g2.bx.psu.edu/Learn/Interval%20Operations
+
+-----
+
+**Syntax**
+
+- **Where overlap is at least** sets the minimum length (in base pairs) of overlap between elements of the two datasets.
+- **Intervals with no overlap** returns entire intervals from the first dataset that do not overlap the second dataset.  The returned intervals are completely unchanged, and this option only filters out intervals that overlap with the second dataset.
+- **Non-overlapping pieces of intervals** returns intervals from the first dataset that have the intervals from the second dataset removed.  Any overlapping base pairs are removed from the range of the interval.  All fields besides start and end are guaranteed to remain unchanged.
+
+-----
+
+**Example**
+
+Intervals with no overlap:
+
+.. image:: ${static_path}/operation_icons/gops_subtractOverlappingIntervals.gif
+
+Non-overlapping pieces of intervals:
+
+.. image:: ${static_path}/operation_icons/gops_subtractOverlappingPieces.gif
+
+</help>
+</tool>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/1.bed	Tue Apr 01 10:52:51 2014 -0400
@@ -0,0 +1,65 @@
+chr1	147962192	147962580	CCDS989.1_cds_0_0_chr1_147962193_r	0	-
+chr1	147984545	147984630	CCDS990.1_cds_0_0_chr1_147984546_f	0	+
+chr1	148078400	148078582	CCDS993.1_cds_0_0_chr1_148078401_r	0	-
+chr1	148185136	148185276	CCDS996.1_cds_0_0_chr1_148185137_f	0	+
+chr10	55251623	55253124	CCDS7248.1_cds_0_0_chr10_55251624_r	0	-
+chr11	116124407	116124501	CCDS8374.1_cds_0_0_chr11_116124408_r	0	-
+chr11	116206508	116206563	CCDS8377.1_cds_0_0_chr11_116206509_f	0	+
+chr11	116211733	116212337	CCDS8378.1_cds_0_0_chr11_116211734_r	0	-
+chr11	1812377	1812407	CCDS7726.1_cds_0_0_chr11_1812378_f	0	+
+chr12	38440094	38440321	CCDS8736.1_cds_0_0_chr12_38440095_r	0	-
+chr13	112381694	112381953	CCDS9526.1_cds_0_0_chr13_112381695_f	0	+
+chr14	98710240	98712285	CCDS9949.1_cds_0_0_chr14_98710241_r	0	-
+chr15	41486872	41487060	CCDS10096.1_cds_0_0_chr15_41486873_r	0	-
+chr15	41673708	41673857	CCDS10097.1_cds_0_0_chr15_41673709_f	0	+
+chr15	41679161	41679250	CCDS10098.1_cds_0_0_chr15_41679162_r	0	-
+chr15	41826029	41826196	CCDS10101.1_cds_0_0_chr15_41826030_f	0	+
+chr16	142908	143003	CCDS10397.1_cds_0_0_chr16_142909_f	0	+
+chr16	179963	180135	CCDS10401.1_cds_0_0_chr16_179964_r	0	-
+chr16	244413	244681	CCDS10402.1_cds_0_0_chr16_244414_f	0	+
+chr16	259268	259383	CCDS10403.1_cds_0_0_chr16_259269_r	0	-
+chr18	23786114	23786321	CCDS11891.1_cds_0_0_chr18_23786115_r	0	-
+chr18	59406881	59407046	CCDS11985.1_cds_0_0_chr18_59406882_f	0	+
+chr18	59455932	59456337	CCDS11986.1_cds_0_0_chr18_59455933_r	0	-
+chr18	59600586	59600754	CCDS11988.1_cds_0_0_chr18_59600587_f	0	+
+chr19	59068595	59069564	CCDS12866.1_cds_0_0_chr19_59068596_f	0	+
+chr19	59236026	59236146	CCDS12872.1_cds_0_0_chr19_59236027_r	0	-
+chr19	59297998	59298008	CCDS12877.1_cds_0_0_chr19_59297999_f	0	+
+chr19	59302168	59302288	CCDS12878.1_cds_0_0_chr19_59302169_r	0	-
+chr2	118288583	118288668	CCDS2120.1_cds_0_0_chr2_118288584_f	0	+
+chr2	118394148	118394202	CCDS2121.1_cds_0_0_chr2_118394149_r	0	-
+chr2	220190202	220190242	CCDS2441.1_cds_0_0_chr2_220190203_f	0	+
+chr2	220229609	220230869	CCDS2443.1_cds_0_0_chr2_220229610_r	0	-
+chr20	33330413	33330423	CCDS13249.1_cds_0_0_chr20_33330414_r	0	-
+chr20	33513606	33513792	CCDS13255.1_cds_0_0_chr20_33513607_f	0	+
+chr20	33579500	33579527	CCDS13256.1_cds_0_0_chr20_33579501_r	0	-
+chr20	33593260	33593348	CCDS13257.1_cds_0_0_chr20_33593261_f	0	+
+chr21	32707032	32707192	CCDS13614.1_cds_0_0_chr21_32707033_f	0	+
+chr21	32869641	32870022	CCDS13615.1_cds_0_0_chr21_32869642_r	0	-
+chr21	33321040	33322012	CCDS13620.1_cds_0_0_chr21_33321041_f	0	+
+chr21	33744994	33745040	CCDS13625.1_cds_0_0_chr21_33744995_r	0	-
+chr22	30120223	30120265	CCDS13897.1_cds_0_0_chr22_30120224_f	0	+
+chr22	30160419	30160661	CCDS13898.1_cds_0_0_chr22_30160420_r	0	-
+chr22	30665273	30665360	CCDS13901.1_cds_0_0_chr22_30665274_f	0	+
+chr22	30939054	30939266	CCDS13903.1_cds_0_0_chr22_30939055_r	0	-
+chr5	131424298	131424460	CCDS4149.1_cds_0_0_chr5_131424299_f	0	+
+chr5	131556601	131556672	CCDS4151.1_cds_0_0_chr5_131556602_r	0	-
+chr5	131621326	131621419	CCDS4152.1_cds_0_0_chr5_131621327_f	0	+
+chr5	131847541	131847666	CCDS4155.1_cds_0_0_chr5_131847542_r	0	-
+chr6	108299600	108299744	CCDS5061.1_cds_0_0_chr6_108299601_r	0	-
+chr6	108594662	108594687	CCDS5063.1_cds_0_0_chr6_108594663_f	0	+
+chr6	108640045	108640151	CCDS5064.1_cds_0_0_chr6_108640046_r	0	-
+chr6	108722976	108723115	CCDS5067.1_cds_0_0_chr6_108722977_f	0	+
+chr7	113660517	113660685	CCDS5760.1_cds_0_0_chr7_113660518_f	0	+
+chr7	116512159	116512389	CCDS5771.1_cds_0_0_chr7_116512160_r	0	-
+chr7	116714099	116714152	CCDS5773.1_cds_0_0_chr7_116714100_f	0	+
+chr7	116945541	116945787	CCDS5774.1_cds_0_0_chr7_116945542_r	0	-
+chr8	118881131	118881317	CCDS6324.1_cds_0_0_chr8_118881132_r	0	-
+chr9	128764156	128764189	CCDS6914.1_cds_0_0_chr9_128764157_f	0	+
+chr9	128787519	128789136	CCDS6915.1_cds_0_0_chr9_128787520_r	0	-
+chr9	128882427	128882523	CCDS6917.1_cds_0_0_chr9_128882428_f	0	+
+chr9	128937229	128937445	CCDS6919.1_cds_0_0_chr9_128937230_r	0	-
+chrX	122745047	122745924	CCDS14606.1_cds_0_0_chrX_122745048_f	0	+
+chrX	152648964	152649196	CCDS14733.1_cds_0_0_chrX_152648965_r	0	-
+chrX	152691446	152691471	CCDS14735.1_cds_0_0_chrX_152691447_f	0	+
+chrX	152694029	152694263	CCDS14736.1_cds_0_0_chrX_152694030_r	0	-
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/2.bed	Tue Apr 01 10:52:51 2014 -0400
@@ -0,0 +1,68 @@
+chr1	147962192	147962580	NM_005997_cds_0_0_chr1_147962193_r	0	-
+chr1	147984545	147984630	BC007833_cds_0_0_chr1_147984546_f	0	+
+chr1	148078400	148078582	AJ011123_cds_0_0_chr1_148078401_r	0	-
+chr1	148185136	148185276	NM_002796_cds_0_0_chr1_148185137_f	0	+
+chr10	55251623	55253124	AY029205_cds_0_0_chr10_55251624_r	0	-
+chr11	116124407	116124501	AK057832_cds_0_0_chr11_116124408_r	0	-
+chr11	116206508	116206563	NM_000040_cds_1_0_chr11_116206509_f	0	+
+chr11	116211733	116212337	BC005380_cds_0_0_chr11_116211734_r	0	-
+chr11	130745911	130745993	AY358331_cds_0_0_chr11_130745912_f	0	+
+chr12	38440094	38440321	NM_052885_cds_0_0_chr12_38440095_r	0	-
+chr12	38905200	38905351	AY792511_cds_0_0_chr12_38905201_f	0	+
+chr13	112381694	112381953	NM_207440_cds_1_0_chr13_112381695_f	0	+
+chr13	29680676	29680875	NM_032116_cds_0_0_chr13_29680677_r	0	-
+chr14	98521864	98521922	U88895_cds_0_0_chr14_98521865_f	0	+
+chr14	98710240	98712285	NM_022898_cds_0_0_chr14_98710241_r	0	-
+chr15	41486872	41487060	BX537418_cds_0_0_chr15_41486873_r	0	-
+chr15	41673708	41673857	AK223365_cds_0_0_chr15_41673709_f	0	+
+chr15	41679161	41679250	NM_153700_cds_0_0_chr15_41679162_r	0	-
+chr15	41773540	41773689	AK223365_cds_0_0_chr15_41773541_f	0	+
+chr16	142908	143003	NM_005332_cds_0_0_chr16_142909_f	0	+
+chr16	179197	179339	BC065198_cds_0_0_chr16_179198_r	0	-
+chr16	244413	244681	AK057165_cds_2_0_chr16_244414_f	0	+
+chr16	259268	259383	AB016929_cds_0_0_chr16_259269_r	0	-
+chr18	23786114	23786321	NM_001792_cds_0_0_chr18_23786115_r	0	-
+chr18	59406881	59407046	NM_012397_cds_1_0_chr18_59406882_f	0	+
+chr18	59455932	59456337	AB046400_cds_0_0_chr18_59455933_r	0	-
+chr18	59528407	59528575	AY792326_cds_0_0_chr18_59528408_f	0	+
+chr19	59068595	59069564	BC013995_cds_1_0_chr19_59068596_f	0	+
+chr19	59236026	59236146	NM_198481_cds_0_0_chr19_59236027_r	0	-
+chr19	59297998	59298008	NM_004542_cds_0_0_chr19_59297999_f	0	+
+chr19	59318205	59318718	AK128544_cds_3_0_chr19_59318206_r	0	-
+chr2	118288583	118288668	NM_006773_cds_0_0_chr2_118288584_f	0	+
+chr2	118390395	118390500	BC005078_cds_0_0_chr2_118390396_r	0	-
+chr2	220108689	220109267	AY125465_cds_0_0_chr2_220108690_f	0	+
+chr2	220229609	220230869	NM_024536_cds_0_0_chr2_220229610_r	0	-
+chr20	33330413	33330423	NM_181466_cds_0_0_chr20_33330414_r	0	-
+chr20	33485370	33486123	BC085019_cds_1_0_chr20_33485371_f	0	+
+chr20	33488491	33489122	NM_000557_cds_1_0_chr20_33488492_r	0	-
+chr20	33513606	33513792	AF022655_cds_1_0_chr20_33513607_f	0	+
+chr21	32687402	32687588	NM_032910_cds_0_0_chr21_32687403_f	0	+
+chr21	32869641	32870022	NM_018277_cds_3_0_chr21_32869642_r	0	-
+chr21	33321040	33322012	NM_005806_cds_1_0_chr21_33321041_f	0	+
+chr21	33728358	33728724	AK129657_cds_0_0_chr21_33728359_r	0	-
+chr22	30120223	30120265	NM_004147_cds_0_0_chr22_30120224_f	0	+
+chr22	30160419	30160661	BC032941_cds_0_0_chr22_30160420_r	0	-
+chr22	30228824	30228916	NM_001007467_cds_1_0_chr22_30228825_f	0	+
+chr22	30340151	30340376	CR456540_cds_0_0_chr22_30340152_r	0	-
+chr5	131311206	131311254	AF099740_cds_11_0_chr5_131311207_r	0	-
+chr5	131424298	131424460	NM_000588_cds_0_0_chr5_131424299_f	0	+
+chr5	131556601	131556672	BC035813_cds_0_0_chr5_131556602_r	0	-
+chr5	131621326	131621419	BC003096_cds_0_0_chr5_131621327_f	0	+
+chr6	108299600	108299744	NM_007214_cds_0_0_chr6_108299601_r	0	-
+chr6	108594662	108594687	NM_003269_cds_0_0_chr6_108594663_f	0	+
+chr6	108640045	108640151	NM_003795_cds_0_0_chr6_108640046_r	0	-
+chr6	108722976	108723115	NM_145315_cds_0_0_chr6_108722977_f	0	+
+chr7	113660517	113660685	AF467257_cds_1_0_chr7_113660518_f	0	+
+chr7	116512159	116512389	NM_003391_cds_0_0_chr7_116512160_r	0	-
+chr7	116714099	116714152	NM_000492_cds_0_0_chr7_116714100_f	0	+
+chr7	116945541	116945787	AF377960_cds_0_0_chr7_116945542_r	0	-
+chr8	118881131	118881317	NM_000127_cds_0_0_chr8_118881132_r	0	-
+chr9	128764156	128764189	BC051300_cds_0_0_chr9_128764157_f	0	+
+chr9	128787519	128789136	NM_014908_cds_0_0_chr9_128787520_r	0	-
+chr9	128789552	128789584	NM_015354_cds_0_0_chr9_128789553_f	0	+
+chr9	128850516	128850624	AB058751_cds_0_0_chr9_128850517_r	0	-
+chrX	122745047	122745924	NM_001167_cds_1_0_chrX_122745048_f	0	+
+chrX	152648964	152649196	NM_000425_cds_0_0_chrX_152648965_r	0	-
+chrX	152691446	152691471	AF101728_cds_0_0_chrX_152691447_f	0	+
+chrX	152694029	152694263	BC052303_cds_0_0_chrX_152694030_r	0	-
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/2_mod.bed	Tue Apr 01 10:52:51 2014 -0400
@@ -0,0 +1,69 @@
+#chr	name	score	strand	start	end
+chr1	NM_005997_cds_0_0_chr1_147962193_r	0	-	147962192	147962580
+chr1	BC007833_cds_0_0_chr1_147984546_f	0	+	147984545	147984630
+chr1	AJ011123_cds_0_0_chr1_148078401_r	0	-	148078400	148078582
+chr1	NM_002796_cds_0_0_chr1_148185137_f	0	+	148185136	148185276
+chr10	AY029205_cds_0_0_chr10_55251624_r	0	-	55251623	55253124
+chr11	AK057832_cds_0_0_chr11_116124408_r	0	-	116124407	116124501
+chr11	NM_000040_cds_1_0_chr11_116206509_f	0	+	116206508	116206563
+chr11	BC005380_cds_0_0_chr11_116211734_r	0	-	116211733	116212337
+chr11	AY358331_cds_0_0_chr11_130745912_f	0	+	130745911	130745993
+chr12	NM_052885_cds_0_0_chr12_38440095_r	0	-	38440094	38440321
+chr12	AY792511_cds_0_0_chr12_38905201_f	0	+	38905200	38905351
+chr13	NM_207440_cds_1_0_chr13_112381695_f	0	+	112381694	112381953
+chr13	NM_032116_cds_0_0_chr13_29680677_r	0	-	29680676	29680875
+chr14	U88895_cds_0_0_chr14_98521865_f	0	+	98521864	98521922
+chr14	NM_022898_cds_0_0_chr14_98710241_r	0	-	98710240	98712285
+chr15	BX537418_cds_0_0_chr15_41486873_r	0	-	41486872	41487060
+chr15	AK223365_cds_0_0_chr15_41673709_f	0	+	41673708	41673857
+chr15	NM_153700_cds_0_0_chr15_41679162_r	0	-	41679161	41679250
+chr15	AK223365_cds_0_0_chr15_41773541_f	0	+	41773540	41773689
+chr16	NM_005332_cds_0_0_chr16_142909_f	0	+	142908	143003
+chr16	BC065198_cds_0_0_chr16_179198_r	0	-	179197	179339
+chr16	AK057165_cds_2_0_chr16_244414_f	0	+	244413	244681
+chr16	AB016929_cds_0_0_chr16_259269_r	0	-	259268	259383
+chr18	NM_001792_cds_0_0_chr18_23786115_r	0	-	23786114	23786321
+chr18	NM_012397_cds_1_0_chr18_59406882_f	0	+	59406881	59407046
+chr18	AB046400_cds_0_0_chr18_59455933_r	0	-	59455932	59456337
+chr18	AY792326_cds_0_0_chr18_59528408_f	0	+	59528407	59528575
+chr19	BC013995_cds_1_0_chr19_59068596_f	0	+	59068595	59069564
+chr19	NM_198481_cds_0_0_chr19_59236027_r	0	-	59236026	59236146
+chr19	NM_004542_cds_0_0_chr19_59297999_f	0	+	59297998	59298008
+chr19	AK128544_cds_3_0_chr19_59318206_r	0	-	59318205	59318718
+chr2	NM_006773_cds_0_0_chr2_118288584_f	0	+	118288583	118288668
+chr2	BC005078_cds_0_0_chr2_118390396_r	0	-	118390395	118390500
+chr2	AY125465_cds_0_0_chr2_220108690_f	0	+	220108689	220109267
+chr2	NM_024536_cds_0_0_chr2_220229610_r	0	-	220229609	220230869
+chr20	NM_181466_cds_0_0_chr20_33330414_r	0	-	33330413	33330423
+chr20	BC085019_cds_1_0_chr20_33485371_f	0	+	33485370	33486123
+chr20	NM_000557_cds_1_0_chr20_33488492_r	0	-	33488491	33489122
+chr20	AF022655_cds_1_0_chr20_33513607_f	0	+	33513606	33513792
+chr21	NM_032910_cds_0_0_chr21_32687403_f	0	+	32687402	32687588
+chr21	NM_018277_cds_3_0_chr21_32869642_r	0	-	32869641	32870022
+chr21	NM_005806_cds_1_0_chr21_33321041_f	0	+	33321040	33322012
+chr21	AK129657_cds_0_0_chr21_33728359_r	0	-	33728358	33728724
+chr22	NM_004147_cds_0_0_chr22_30120224_f	0	+	30120223	30120265
+chr22	BC032941_cds_0_0_chr22_30160420_r	0	-	30160419	30160661
+chr22	NM_001007467_cds_1_0_chr22_30228825_f	0	+	30228824	30228916
+chr22	CR456540_cds_0_0_chr22_30340152_r	0	-	30340151	30340376
+chr5	AF099740_cds_11_0_chr5_131311207_r	0	-	131311206	131311254
+chr5	NM_000588_cds_0_0_chr5_131424299_f	0	+	131424298	131424460
+chr5	BC035813_cds_0_0_chr5_131556602_r	0	-	131556601	131556672
+chr5	BC003096_cds_0_0_chr5_131621327_f	0	+	131621326	131621419
+chr6	NM_007214_cds_0_0_chr6_108299601_r	0	-	108299600	108299744
+chr6	NM_003269_cds_0_0_chr6_108594663_f	0	+	108594662	108594687
+chr6	NM_003795_cds_0_0_chr6_108640046_r	0	-	108640045	108640151
+chr6	NM_145315_cds_0_0_chr6_108722977_f	0	+	108722976	108723115
+chr7	AF467257_cds_1_0_chr7_113660518_f	0	+	113660517	113660685
+chr7	NM_003391_cds_0_0_chr7_116512160_r	0	-	116512159	116512389
+chr7	NM_000492_cds_0_0_chr7_116714100_f	0	+	116714099	116714152
+chr7	AF377960_cds_0_0_chr7_116945542_r	0	-	116945541	116945787
+chr8	NM_000127_cds_0_0_chr8_118881132_r	0	-	118881131	118881317
+chr9	BC051300_cds_0_0_chr9_128764157_f	0	+	128764156	128764189
+chr9	NM_014908_cds_0_0_chr9_128787520_r	0	-	128787519	128789136
+chr9	NM_015354_cds_0_0_chr9_128789553_f	0	+	128789552	128789584
+chr9	AB058751_cds_0_0_chr9_128850517_r	0	-	128850516	128850624
+chrX	NM_001167_cds_1_0_chrX_122745048_f	0	+	122745047	122745924
+chrX	NM_000425_cds_0_0_chrX_152648965_r	0	-	152648964	152649196
+chrX	AF101728_cds_0_0_chrX_152691447_f	0	+	152691446	152691471
+chrX	BC052303_cds_0_0_chrX_152694030_r	0	-	152694029	152694263
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/gops-subtract-p.dat	Tue Apr 01 10:52:51 2014 -0400
@@ -0,0 +1,16 @@
+chr11	1812377	1812407	CCDS7726.1_cds_0_0_chr11_1812378_f	0	+
+chr15	41826029	41826196	CCDS10101.1_cds_0_0_chr15_41826030_f	0	+
+chr16	179963	180135	CCDS10401.1_cds_0_0_chr16_179964_r	0	-
+chr18	59600586	59600754	CCDS11988.1_cds_0_0_chr18_59600587_f	0	+
+chr19	59302168	59302288	CCDS12878.1_cds_0_0_chr19_59302169_r	0	-
+chr2	118394148	118394202	CCDS2121.1_cds_0_0_chr2_118394149_r	0	-
+chr2	220190202	220190242	CCDS2441.1_cds_0_0_chr2_220190203_f	0	+
+chr20	33579500	33579527	CCDS13256.1_cds_0_0_chr20_33579501_r	0	-
+chr20	33593260	33593348	CCDS13257.1_cds_0_0_chr20_33593261_f	0	+
+chr21	32707032	32707192	CCDS13614.1_cds_0_0_chr21_32707033_f	0	+
+chr21	33744994	33745040	CCDS13625.1_cds_0_0_chr21_33744995_r	0	-
+chr22	30665273	30665360	CCDS13901.1_cds_0_0_chr22_30665274_f	0	+
+chr22	30939054	30939266	CCDS13903.1_cds_0_0_chr22_30939055_r	0	-
+chr5	131847541	131847666	CCDS4155.1_cds_0_0_chr5_131847542_r	0	-
+chr9	128882427	128882523	CCDS6917.1_cds_0_0_chr9_128882428_f	0	+
+chr9	128937229	128937445	CCDS6919.1_cds_0_0_chr9_128937230_r	0	-
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/gops-subtract.dat	Tue Apr 01 10:52:51 2014 -0400
@@ -0,0 +1,16 @@
+chr11	1812377	1812407	CCDS7726.1_cds_0_0_chr11_1812378_f	0	+
+chr15	41826029	41826196	CCDS10101.1_cds_0_0_chr15_41826030_f	0	+
+chr16	179963	180135	CCDS10401.1_cds_0_0_chr16_179964_r	0	-
+chr18	59600586	59600754	CCDS11988.1_cds_0_0_chr18_59600587_f	0	+
+chr19	59302168	59302288	CCDS12878.1_cds_0_0_chr19_59302169_r	0	-
+chr2	118394148	118394202	CCDS2121.1_cds_0_0_chr2_118394149_r	0	-
+chr2	220190202	220190242	CCDS2441.1_cds_0_0_chr2_220190203_f	0	+
+chr20	33579500	33579527	CCDS13256.1_cds_0_0_chr20_33579501_r	0	-
+chr20	33593260	33593348	CCDS13257.1_cds_0_0_chr20_33593261_f	0	+
+chr21	32707032	32707192	CCDS13614.1_cds_0_0_chr21_32707033_f	0	+
+chr21	33744994	33745040	CCDS13625.1_cds_0_0_chr21_33744995_r	0	-
+chr22	30665273	30665360	CCDS13901.1_cds_0_0_chr22_30665274_f	0	+
+chr22	30939054	30939266	CCDS13903.1_cds_0_0_chr22_30939055_r	0	-
+chr5	131847541	131847666	CCDS4155.1_cds_0_0_chr5_131847542_r	0	-
+chr9	128882427	128882523	CCDS6917.1_cds_0_0_chr9_128882428_f	0	+
+chr9	128937229	128937445	CCDS6919.1_cds_0_0_chr9_128937230_r	0	-
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/gops_subtract_bigint.bed	Tue Apr 01 10:52:51 2014 -0400
@@ -0,0 +1,66 @@
+chr1	147962192	147962580	CCDS989.1_cds_0_0_chr1_147962193_r	0	-
+chr1	147984545	147984630	CCDS990.1_cds_0_0_chr1_147984546_f	0	+
+chr1	148078400	148078582	CCDS993.1_cds_0_0_chr1_148078401_r	0	-
+chr1	148185136	148185276	CCDS996.1_cds_0_0_chr1_148185137_f	0	+
+chr10	55251623	55253124	CCDS7248.1_cds_0_0_chr10_55251624_r	0	-
+chr11	116124407	116124501	CCDS8374.1_cds_0_0_chr11_116124408_r	0	-
+chr11	116206508	116206563	CCDS8377.1_cds_0_0_chr11_116206509_f	0	+
+chr11	116211733	116212337	CCDS8378.1_cds_0_0_chr11_116211734_r	0	-
+chr11	1812377	1812407	CCDS7726.1_cds_0_0_chr11_1812378_f	0	+
+chr12	38440094	38440321	CCDS8736.1_cds_0_0_chr12_38440095_r	0	-
+chr13	112381694	112381953	CCDS9526.1_cds_0_0_chr13_112381695_f	0	+
+chr14	98710240	98712285	CCDS9949.1_cds_0_0_chr14_98710241_r	0	-
+chr15	41486872	41487060	CCDS10096.1_cds_0_0_chr15_41486873_r	0	-
+chr15	41673708	41673857	CCDS10097.1_cds_0_0_chr15_41673709_f	0	+
+chr15	41679161	41679250	CCDS10098.1_cds_0_0_chr15_41679162_r	0	-
+chr15	41826029	41826196	CCDS10101.1_cds_0_0_chr15_41826030_f	0	+
+chr16	142908	143003	CCDS10397.1_cds_0_0_chr16_142909_f	0	+
+chr16	179963	180135	CCDS10401.1_cds_0_0_chr16_179964_r	0	-
+chr16	244413	244681	CCDS10402.1_cds_0_0_chr16_244414_f	0	+
+chr16	259268	259383	CCDS10403.1_cds_0_0_chr16_259269_r	0	-
+chr18	23786114	23786321	CCDS11891.1_cds_0_0_chr18_23786115_r	0	-
+chr18	59406881	59407046	CCDS11985.1_cds_0_0_chr18_59406882_f	0	+
+chr18	59455932	59456337	CCDS11986.1_cds_0_0_chr18_59455933_r	0	-
+chr18	59600586	59600754	CCDS11988.1_cds_0_0_chr18_59600587_f	0	+
+chr19	59068595	59069564	CCDS12866.1_cds_0_0_chr19_59068596_f	0	+
+chr19	59236026	59236146	CCDS12872.1_cds_0_0_chr19_59236027_r	0	-
+chr19	59297998	59298008	CCDS12877.1_cds_0_0_chr19_59297999_f	0	+
+chr19	59302168	59302288	CCDS12878.1_cds_0_0_chr19_59302169_r	0	-
+chr2	118288583	118288668	CCDS2120.1_cds_0_0_chr2_118288584_f	0	+
+chr2	118394148	118394202	CCDS2121.1_cds_0_0_chr2_118394149_r	0	-
+chr2	220190202	220190242	CCDS2441.1_cds_0_0_chr2_220190203_f	0	+
+chr2	220229609	220230869	CCDS2443.1_cds_0_0_chr2_220229610_r	0	-
+chr20	33330413	33330423	CCDS13249.1_cds_0_0_chr20_33330414_r	0	-
+chr20	33513606	33513792	CCDS13255.1_cds_0_0_chr20_33513607_f	0	+
+chr20	33579500	33579527	CCDS13256.1_cds_0_0_chr20_33579501_r	0	-
+chr20	33593260	33593348	CCDS13257.1_cds_0_0_chr20_33593261_f	0	+
+chr21	32707032	32707192	CCDS13614.1_cds_0_0_chr21_32707033_f	0	+
+chr21	32869641	32870022	CCDS13615.1_cds_0_0_chr21_32869642_r	0	-
+chr21	33321040	33322012	CCDS13620.1_cds_0_0_chr21_33321041_f	0	+
+chr21	33744994	33745040	CCDS13625.1_cds_0_0_chr21_33744995_r	0	-
+chr22	30120223	30120265	CCDS13897.1_cds_0_0_chr22_30120224_f	0	+
+chr22	30160419	30160661	CCDS13898.1_cds_0_0_chr22_30160420_r	0	-
+chr22	30665273	30665360	CCDS13901.1_cds_0_0_chr22_30665274_f	0	+
+chr22	30939054	30939266	CCDS13903.1_cds_0_0_chr22_30939055_r	0	-
+chr5	131424298	131424460	CCDS4149.1_cds_0_0_chr5_131424299_f	0	+
+chr5	131556601	131556672	CCDS4151.1_cds_0_0_chr5_131556602_r	0	-
+chr5	131621326	131621419	CCDS4152.1_cds_0_0_chr5_131621327_f	0	+
+chr5	131847541	131847666	CCDS4155.1_cds_0_0_chr5_131847542_r	0	-
+chr6	108299600	108299744	CCDS5061.1_cds_0_0_chr6_108299601_r	0	-
+chr6	108594662	108594687	CCDS5063.1_cds_0_0_chr6_108594663_f	0	+
+chr6	108640045	108640151	CCDS5064.1_cds_0_0_chr6_108640046_r	0	-
+chr6	108722976	108723115	CCDS5067.1_cds_0_0_chr6_108722977_f	0	+
+chr7	113660517	113660685	CCDS5760.1_cds_0_0_chr7_113660518_f	0	+
+chr7	116512159	116512389	CCDS5771.1_cds_0_0_chr7_116512160_r	0	-
+chr7	116714099	116714152	CCDS5773.1_cds_0_0_chr7_116714100_f	0	+
+chr7	116945541	116945787	CCDS5774.1_cds_0_0_chr7_116945542_r	0	-
+chr8	118881131	118881317	CCDS6324.1_cds_0_0_chr8_118881132_r	0	-
+chr9	128764156	128764189	CCDS6914.1_cds_0_0_chr9_128764157_f	0	+
+chr9	128787519	128789136	CCDS6915.1_cds_0_0_chr9_128787520_r	0	-
+chr9	128882427	128882523	CCDS6917.1_cds_0_0_chr9_128882428_f	0	+
+chr9	128937229	128937445	CCDS6919.1_cds_0_0_chr9_128937230_r	0	-
+chrX	122745047	122745924	CCDS14606.1_cds_0_0_chrX_122745048_f	0	+
+chrX	152648964	152649196	CCDS14733.1_cds_0_0_chrX_152648965_r	0	-
+chrX	152691446	152691471	CCDS14735.1_cds_0_0_chrX_152691447_f	0	+
+chrX	152694029	152694263	CCDS14736.1_cds_0_0_chrX_152694030_r	0	-
+chrX	4294967295	4294967322	CCDS14736.1_cds_0_0_chrX_4294967296_r	0	-
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/gops_subtract_diffCols.dat	Tue Apr 01 10:52:51 2014 -0400
@@ -0,0 +1,16 @@
+chr11	1812377	1812407	CCDS7726.1_cds_0_0_chr11_1812378_f	0	+
+chr15	41826029	41826196	CCDS10101.1_cds_0_0_chr15_41826030_f	0	+
+chr16	179963	180135	CCDS10401.1_cds_0_0_chr16_179964_r	0	-
+chr18	59600586	59600754	CCDS11988.1_cds_0_0_chr18_59600587_f	0	+
+chr19	59302168	59302288	CCDS12878.1_cds_0_0_chr19_59302169_r	0	-
+chr2	118394148	118394202	CCDS2121.1_cds_0_0_chr2_118394149_r	0	-
+chr2	220190202	220190242	CCDS2441.1_cds_0_0_chr2_220190203_f	0	+
+chr20	33579500	33579527	CCDS13256.1_cds_0_0_chr20_33579501_r	0	-
+chr20	33593260	33593348	CCDS13257.1_cds_0_0_chr20_33593261_f	0	+
+chr21	32707032	32707192	CCDS13614.1_cds_0_0_chr21_32707033_f	0	+
+chr21	33744994	33745040	CCDS13625.1_cds_0_0_chr21_33744995_r	0	-
+chr22	30665273	30665360	CCDS13901.1_cds_0_0_chr22_30665274_f	0	+
+chr22	30939054	30939266	CCDS13903.1_cds_0_0_chr22_30939055_r	0	-
+chr5	131847541	131847666	CCDS4155.1_cds_0_0_chr5_131847542_r	0	-
+chr9	128882427	128882523	CCDS6917.1_cds_0_0_chr9_128882428_f	0	+
+chr9	128937229	128937445	CCDS6919.1_cds_0_0_chr9_128937230_r	0	-
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/gops_subtract_in1.gff	Tue Apr 01 10:52:51 2014 -0400
@@ -0,0 +1,500 @@
+chr13	Cufflinks	transcript	3405463	3405542	1000	.	.	gene_id "CUFF.50189"; transcript_id "CUFF.50189.1"; FPKM "6.3668918357"; frac "1.000000"; conf_lo "0.000000"; conf_hi "17.963819"; cov "0.406914";
+chr13	Cufflinks	exon	3405463	3405542	1000	.	.	gene_id "CUFF.50189"; transcript_id "CUFF.50189.1"; exon_number "1"; FPKM "6.3668918357"; frac "1.000000"; conf_lo "0.000000"; conf_hi "17.963819"; cov "0.406914";
+chr13	Cufflinks	transcript	3473337	3473372	1000	.	.	gene_id "CUFF.50191"; transcript_id "CUFF.50191.1"; FPKM "11.7350749444"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.205225"; cov "0.750000";
+chr13	Cufflinks	exon	3473337	3473372	1000	.	.	gene_id "CUFF.50191"; transcript_id "CUFF.50191.1"; exon_number "1"; FPKM "11.7350749444"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.205225"; cov "0.750000";
+chr13	Cufflinks	transcript	3490319	3490350	1000	.	.	gene_id "CUFF.50193"; transcript_id "CUFF.50193.1"; FPKM "39.6058779373"; frac "1.000000"; conf_lo "0.000000"; conf_hi "85.338807"; cov "2.531250";
+chr13	Cufflinks	exon	3490319	3490350	1000	.	.	gene_id "CUFF.50193"; transcript_id "CUFF.50193.1"; exon_number "1"; FPKM "39.6058779373"; frac "1.000000"; conf_lo "0.000000"; conf_hi "85.338807"; cov "2.531250";
+chr13	Cufflinks	transcript	3565855	3566203	1000	-	.	gene_id "CUFF.50195"; transcript_id "CUFF.50195.1"; FPKM "29.8710998584"; frac "1.000000"; conf_lo "7.290671"; conf_hi "52.451529"; cov "1.909091";
+chr13	Cufflinks	exon	3565855	3565913	1000	-	.	gene_id "CUFF.50195"; transcript_id "CUFF.50195.1"; exon_number "1"; FPKM "29.8710998584"; frac "1.000000"; conf_lo "7.290671"; conf_hi "52.451529"; cov "1.909091";
+chr13	Cufflinks	exon	3566164	3566203	1000	-	.	gene_id "CUFF.50195"; transcript_id "CUFF.50195.1"; exon_number "2"; FPKM "29.8710998584"; frac "1.000000"; conf_lo "7.290671"; conf_hi "52.451529"; cov "1.909091";
+chr13	Cufflinks	transcript	3566475	3566560	1000	.	.	gene_id "CUFF.50197"; transcript_id "CUFF.50197.1"; FPKM "14.7370708604"; frac "1.000000"; conf_lo "0.000000"; conf_hi "31.753975"; cov "0.941860";
+chr13	Cufflinks	exon	3566475	3566560	1000	.	.	gene_id "CUFF.50197"; transcript_id "CUFF.50197.1"; exon_number "1"; FPKM "14.7370708604"; frac "1.000000"; conf_lo "0.000000"; conf_hi "31.753975"; cov "0.941860";
+chr13	Cufflinks	transcript	3566664	3566942	1000	.	.	gene_id "CUFF.50199"; transcript_id "CUFF.50199.1"; FPKM "31.7874813134"; frac "1.000000"; conf_lo "17.911934"; conf_hi "45.663029"; cov "2.031569";
+chr13	Cufflinks	exon	3566664	3566942	1000	.	.	gene_id "CUFF.50199"; transcript_id "CUFF.50199.1"; exon_number "1"; FPKM "31.7874813134"; frac "1.000000"; conf_lo "17.911934"; conf_hi "45.663029"; cov "2.031569";
+chr13	Cufflinks	transcript	3568042	3568068	1000	.	.	gene_id "CUFF.50201"; transcript_id "CUFF.50201.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	3568042	3568068	1000	.	.	gene_id "CUFF.50201"; transcript_id "CUFF.50201.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	3569564	3569626	1000	.	.	gene_id "CUFF.50203"; transcript_id "CUFF.50203.1"; FPKM "13.4115142222"; frac "1.000000"; conf_lo "0.000000"; conf_hi "32.378260"; cov "0.857143";
+chr13	Cufflinks	exon	3569564	3569626	1000	.	.	gene_id "CUFF.50203"; transcript_id "CUFF.50203.1"; exon_number "1"; FPKM "13.4115142222"; frac "1.000000"; conf_lo "0.000000"; conf_hi "32.378260"; cov "0.857143";
+chr13	Cufflinks	transcript	3594171	3594199	1000	.	.	gene_id "CUFF.50205"; transcript_id "CUFF.50205.1"; FPKM "29.1353584826"; frac "1.000000"; conf_lo "0.000000"; conf_hi "70.338978"; cov "1.862069";
+chr13	Cufflinks	exon	3594171	3594199	1000	.	.	gene_id "CUFF.50205"; transcript_id "CUFF.50205.1"; exon_number "1"; FPKM "29.1353584826"; frac "1.000000"; conf_lo "0.000000"; conf_hi "70.338978"; cov "1.862069";
+chr13	Cufflinks	transcript	3606116	3613028	1000	-	.	gene_id "CUFF.50207"; transcript_id "CUFF.50207.1"; FPKM "19.6171377865"; frac "1.000000"; conf_lo "0.936995"; conf_hi "38.297281"; cov "1.253750";
+chr13	Cufflinks	exon	3606116	3606146	1000	-	.	gene_id "CUFF.50207"; transcript_id "CUFF.50207.1"; exon_number "1"; FPKM "19.6171377865"; frac "1.000000"; conf_lo "0.936995"; conf_hi "38.297281"; cov "1.253750";
+chr13	Cufflinks	exon	3612965	3613028	1000	-	.	gene_id "CUFF.50207"; transcript_id "CUFF.50207.1"; exon_number "2"; FPKM "19.6171377865"; frac "1.000000"; conf_lo "0.936995"; conf_hi "38.297281"; cov "1.253750";
+chr13	Cufflinks	transcript	3603507	3603533	1000	.	.	gene_id "CUFF.50209"; transcript_id "CUFF.50209.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	3603507	3603533	1000	.	.	gene_id "CUFF.50209"; transcript_id "CUFF.50209.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	3604709	3604735	1000	.	.	gene_id "CUFF.50211"; transcript_id "CUFF.50211.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000";
+chr13	Cufflinks	exon	3604709	3604735	1000	.	.	gene_id "CUFF.50211"; transcript_id "CUFF.50211.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000";
+chr13	Cufflinks	transcript	3612524	3612550	1000	.	.	gene_id "CUFF.50213"; transcript_id "CUFF.50213.1"; FPKM "117.3321730764"; frac "1.000000"; conf_lo "31.638086"; conf_hi "203.026260"; cov "7.498813";
+chr13	Cufflinks	exon	3612524	3612550	1000	.	.	gene_id "CUFF.50213"; transcript_id "CUFF.50213.1"; exon_number "1"; FPKM "117.3321730764"; frac "1.000000"; conf_lo "31.638086"; conf_hi "203.026260"; cov "7.498813";
+chr13	Cufflinks	transcript	3639250	3639290	1000	.	.	gene_id "CUFF.50215"; transcript_id "CUFF.50215.1"; FPKM "30.9119047316"; frac "1.000000"; conf_lo "0.000000"; conf_hi "66.605898"; cov "1.975610";
+chr13	Cufflinks	exon	3639250	3639290	1000	.	.	gene_id "CUFF.50215"; transcript_id "CUFF.50215.1"; exon_number "1"; FPKM "30.9119047316"; frac "1.000000"; conf_lo "0.000000"; conf_hi "66.605898"; cov "1.975610";
+chr13	Cufflinks	transcript	3649635	3649777	1000	.	.	gene_id "CUFF.50217"; transcript_id "CUFF.50217.1"; FPKM "14.7714230069"; frac "1.000000"; conf_lo "1.559461"; conf_hi "27.983385"; cov "0.944056";
+chr13	Cufflinks	exon	3649635	3649777	1000	.	.	gene_id "CUFF.50217"; transcript_id "CUFF.50217.1"; exon_number "1"; FPKM "14.7714230069"; frac "1.000000"; conf_lo "1.559461"; conf_hi "27.983385"; cov "0.944056";
+chr13	Cufflinks	transcript	3649976	3650072	1000	.	.	gene_id "CUFF.50219"; transcript_id "CUFF.50219.1"; FPKM "26.1317132782"; frac "1.000000"; conf_lo "4.795259"; conf_hi "47.468168"; cov "1.670103";
+chr13	Cufflinks	exon	3649976	3650072	1000	.	.	gene_id "CUFF.50219"; transcript_id "CUFF.50219.1"; exon_number "1"; FPKM "26.1317132782"; frac "1.000000"; conf_lo "4.795259"; conf_hi "47.468168"; cov "1.670103";
+chr13	Cufflinks	transcript	3650165	3650345	1000	.	.	gene_id "CUFF.50221"; transcript_id "CUFF.50221.1"; FPKM "16.3383363867"; frac "1.000000"; conf_lo "3.987715"; conf_hi "28.688958"; cov "1.044199";
+chr13	Cufflinks	exon	3650165	3650345	1000	.	.	gene_id "CUFF.50221"; transcript_id "CUFF.50221.1"; exon_number "1"; FPKM "16.3383363867"; frac "1.000000"; conf_lo "3.987715"; conf_hi "28.688958"; cov "1.044199";
+chr13	Cufflinks	transcript	3650498	3651017	1000	.	.	gene_id "CUFF.50223"; transcript_id "CUFF.50223.1"; FPKM "38.9965567383"; frac "1.000000"; conf_lo "27.739220"; conf_hi "50.253893"; cov "2.492308";
+chr13	Cufflinks	exon	3650498	3651017	1000	.	.	gene_id "CUFF.50223"; transcript_id "CUFF.50223.1"; exon_number "1"; FPKM "38.9965567383"; frac "1.000000"; conf_lo "27.739220"; conf_hi "50.253893"; cov "2.492308";
+chr13	Cufflinks	transcript	3652248	3652287	1000	.	.	gene_id "CUFF.50225"; transcript_id "CUFF.50225.1"; FPKM "21.1231348999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "50.995759"; cov "1.350000";
+chr13	Cufflinks	exon	3652248	3652287	1000	.	.	gene_id "CUFF.50225"; transcript_id "CUFF.50225.1"; exon_number "1"; FPKM "21.1231348999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "50.995759"; cov "1.350000";
+chr13	Cufflinks	transcript	3652708	3652757	1000	.	.	gene_id "CUFF.50227"; transcript_id "CUFF.50227.1"; FPKM "16.8985079199"; frac "1.000000"; conf_lo "0.000000"; conf_hi "40.796607"; cov "1.080000";
+chr13	Cufflinks	exon	3652708	3652757	1000	.	.	gene_id "CUFF.50227"; transcript_id "CUFF.50227.1"; exon_number "1"; FPKM "16.8985079199"; frac "1.000000"; conf_lo "0.000000"; conf_hi "40.796607"; cov "1.080000";
+chr13	Cufflinks	transcript	3652858	3652892	1000	.	.	gene_id "CUFF.50229"; transcript_id "CUFF.50229.1"; FPKM "24.1407255999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "58.280867"; cov "1.542857";
+chr13	Cufflinks	exon	3652858	3652892	1000	.	.	gene_id "CUFF.50229"; transcript_id "CUFF.50229.1"; exon_number "1"; FPKM "24.1407255999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "58.280867"; cov "1.542857";
+chr13	Cufflinks	transcript	3803155	3803189	1000	.	.	gene_id "CUFF.50231"; transcript_id "CUFF.50231.1"; FPKM "193.0684834367"; frac "1.000000"; conf_lo "96.519912"; conf_hi "289.617054"; cov "12.339194";
+chr13	Cufflinks	exon	3803155	3803189	1000	.	.	gene_id "CUFF.50231"; transcript_id "CUFF.50231.1"; exon_number "1"; FPKM "193.0684834367"; frac "1.000000"; conf_lo "96.519912"; conf_hi "289.617054"; cov "12.339194";
+chr13	Cufflinks	transcript	3881504	3881530	1000	.	.	gene_id "CUFF.50233"; transcript_id "CUFF.50233.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	3881504	3881530	1000	.	.	gene_id "CUFF.50233"; transcript_id "CUFF.50233.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	3881847	3881940	1000	.	.	gene_id "CUFF.50235"; transcript_id "CUFF.50235.1"; FPKM "11.2303742880"; frac "1.000000"; conf_lo "0.000000"; conf_hi "25.439173"; cov "0.717744";
+chr13	Cufflinks	exon	3881847	3881940	1000	.	.	gene_id "CUFF.50235"; transcript_id "CUFF.50235.1"; exon_number "1"; FPKM "11.2303742880"; frac "1.000000"; conf_lo "0.000000"; conf_hi "25.439173"; cov "0.717744";
+chr13	Cufflinks	transcript	3882719	3882811	1000	.	.	gene_id "CUFF.50237"; transcript_id "CUFF.50237.1"; FPKM "9.0852193118"; frac "1.000000"; conf_lo "0.000000"; conf_hi "21.933660"; cov "0.580645";
+chr13	Cufflinks	exon	3882719	3882811	1000	.	.	gene_id "CUFF.50237"; transcript_id "CUFF.50237.1"; exon_number "1"; FPKM "9.0852193118"; frac "1.000000"; conf_lo "0.000000"; conf_hi "21.933660"; cov "0.580645";
+chr13	Cufflinks	transcript	3940646	3940672	1000	.	.	gene_id "CUFF.50239"; transcript_id "CUFF.50239.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	3940646	3940672	1000	.	.	gene_id "CUFF.50239"; transcript_id "CUFF.50239.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	4135893	4135996	1000	.	.	gene_id "CUFF.50241"; transcript_id "CUFF.50241.1"; FPKM "8.1242826538"; frac "1.000000"; conf_lo "0.000000"; conf_hi "19.613753"; cov "0.519231";
+chr13	Cufflinks	exon	4135893	4135996	1000	.	.	gene_id "CUFF.50241"; transcript_id "CUFF.50241.1"; exon_number "1"; FPKM "8.1242826538"; frac "1.000000"; conf_lo "0.000000"; conf_hi "19.613753"; cov "0.519231";
+chr13	Cufflinks	transcript	4246054	4246080	1000	.	.	gene_id "CUFF.50243"; transcript_id "CUFF.50243.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	4246054	4246080	1000	.	.	gene_id "CUFF.50243"; transcript_id "CUFF.50243.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	4246081	4246107	1000	.	.	gene_id "CUFF.50245"; transcript_id "CUFF.50245.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000";
+chr13	Cufflinks	exon	4246081	4246107	1000	.	.	gene_id "CUFF.50245"; transcript_id "CUFF.50245.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000";
+chr13	Cufflinks	transcript	4247347	4247373	1000	.	.	gene_id "CUFF.50247"; transcript_id "CUFF.50247.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000";
+chr13	Cufflinks	exon	4247347	4247373	1000	.	.	gene_id "CUFF.50247"; transcript_id "CUFF.50247.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000";
+chr13	Cufflinks	transcript	4247393	4247419	1000	.	.	gene_id "CUFF.50249"; transcript_id "CUFF.50249.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000";
+chr13	Cufflinks	exon	4247393	4247419	1000	.	.	gene_id "CUFF.50249"; transcript_id "CUFF.50249.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000";
+chr13	Cufflinks	transcript	4253585	4253611	1000	.	.	gene_id "CUFF.50251"; transcript_id "CUFF.50251.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	4253585	4253611	1000	.	.	gene_id "CUFF.50251"; transcript_id "CUFF.50251.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	4356816	4356842	1000	.	.	gene_id "CUFF.50253"; transcript_id "CUFF.50253.1"; FPKM "31.2563804501"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.485841"; cov "1.997626";
+chr13	Cufflinks	exon	4356816	4356842	1000	.	.	gene_id "CUFF.50253"; transcript_id "CUFF.50253.1"; exon_number "1"; FPKM "31.2563804501"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.485841"; cov "1.997626";
+chr13	Cufflinks	transcript	4591975	4592074	1000	.	.	gene_id "CUFF.50255"; transcript_id "CUFF.50255.1"; FPKM "16.8985079199"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.797016"; cov "1.080000";
+chr13	Cufflinks	exon	4591975	4592074	1000	.	.	gene_id "CUFF.50255"; transcript_id "CUFF.50255.1"; exon_number "1"; FPKM "16.8985079199"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.797016"; cov "1.080000";
+chr13	Cufflinks	transcript	4592148	4592531	1000	.	.	gene_id "CUFF.50257"; transcript_id "CUFF.50257.1"; FPKM "22.0032655207"; frac "1.000000"; conf_lo "12.163106"; conf_hi "31.843425"; cov "1.406250";
+chr13	Cufflinks	exon	4592148	4592531	1000	.	.	gene_id "CUFF.50257"; transcript_id "CUFF.50257.1"; exon_number "1"; FPKM "22.0032655207"; frac "1.000000"; conf_lo "12.163106"; conf_hi "31.843425"; cov "1.406250";
+chr13	Cufflinks	transcript	4592862	4592890	1000	.	.	gene_id "CUFF.50259"; transcript_id "CUFF.50259.1"; FPKM "58.2707169652"; frac "1.000000"; conf_lo "0.000000"; conf_hi "116.541434"; cov "3.724138";
+chr13	Cufflinks	exon	4592862	4592890	1000	.	.	gene_id "CUFF.50259"; transcript_id "CUFF.50259.1"; exon_number "1"; FPKM "58.2707169652"; frac "1.000000"; conf_lo "0.000000"; conf_hi "116.541434"; cov "3.724138";
+chr13	Cufflinks	transcript	4594319	4594938	1000	-	.	gene_id "CUFF.50261"; transcript_id "CUFF.50261.1"; FPKM "29.3887094260"; frac "1.000000"; conf_lo "8.607754"; conf_hi "50.169665"; cov "1.878261";
+chr13	Cufflinks	exon	4594319	4594400	1000	-	.	gene_id "CUFF.50261"; transcript_id "CUFF.50261.1"; exon_number "1"; FPKM "29.3887094260"; frac "1.000000"; conf_lo "8.607754"; conf_hi "50.169665"; cov "1.878261";
+chr13	Cufflinks	exon	4594906	4594938	1000	-	.	gene_id "CUFF.50261"; transcript_id "CUFF.50261.1"; exon_number "2"; FPKM "29.3887094260"; frac "1.000000"; conf_lo "8.607754"; conf_hi "50.169665"; cov "1.878261";
+chr13	Cufflinks	transcript	4596799	4598059	1000	-	.	gene_id "CUFF.50263"; transcript_id "CUFF.50263.1"; FPKM "22.8358215134"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.671643"; cov "1.459459";
+chr13	Cufflinks	exon	4596799	4596828	1000	-	.	gene_id "CUFF.50263"; transcript_id "CUFF.50263.1"; exon_number "1"; FPKM "22.8358215134"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.671643"; cov "1.459459";
+chr13	Cufflinks	exon	4598016	4598059	1000	-	.	gene_id "CUFF.50263"; transcript_id "CUFF.50263.1"; exon_number "2"; FPKM "22.8358215134"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.671643"; cov "1.459459";
+chr13	Cufflinks	transcript	4601790	4601816	1000	.	.	gene_id "CUFF.50265"; transcript_id "CUFF.50265.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	4601790	4601816	1000	.	.	gene_id "CUFF.50265"; transcript_id "CUFF.50265.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	4601884	4601952	1000	.	.	gene_id "CUFF.50267"; transcript_id "CUFF.50267.1"; FPKM "12.2452955941"; frac "1.000000"; conf_lo "0.000000"; conf_hi "29.562759"; cov "0.782609";
+chr13	Cufflinks	exon	4601884	4601952	1000	.	.	gene_id "CUFF.50267"; transcript_id "CUFF.50267.1"; exon_number "1"; FPKM "12.2452955941"; frac "1.000000"; conf_lo "0.000000"; conf_hi "29.562759"; cov "0.782609";
+chr13	Cufflinks	transcript	3541632	3541797	1000	.	.	gene_id "CUFF.50269"; transcript_id "CUFF.50269.1"; FPKM "10.1798240481"; frac "1.000000"; conf_lo "0.000000"; conf_hi "20.359648"; cov "0.650602";
+chr13	Cufflinks	exon	3541632	3541797	1000	.	.	gene_id "CUFF.50269"; transcript_id "CUFF.50269.1"; exon_number "1"; FPKM "10.1798240481"; frac "1.000000"; conf_lo "0.000000"; conf_hi "20.359648"; cov "0.650602";
+chr13	Cufflinks	transcript	3541917	3542016	1000	.	.	gene_id "CUFF.50271"; transcript_id "CUFF.50271.1"; FPKM "12.6738809399"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.308418"; cov "0.810000";
+chr13	Cufflinks	exon	3541917	3542016	1000	.	.	gene_id "CUFF.50271"; transcript_id "CUFF.50271.1"; exon_number "1"; FPKM "12.6738809399"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.308418"; cov "0.810000";
+chr13	Cufflinks	transcript	3542096	3542122	1000	.	.	gene_id "CUFF.50273"; transcript_id "CUFF.50273.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	3542096	3542122	1000	.	.	gene_id "CUFF.50273"; transcript_id "CUFF.50273.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	3548183	3548209	1000	.	.	gene_id "CUFF.50275"; transcript_id "CUFF.50275.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	3548183	3548209	1000	.	.	gene_id "CUFF.50275"; transcript_id "CUFF.50275.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	3559238	3559264	1000	.	.	gene_id "CUFF.50277"; transcript_id "CUFF.50277.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000";
+chr13	Cufflinks	exon	3559238	3559264	1000	.	.	gene_id "CUFF.50277"; transcript_id "CUFF.50277.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000";
+chr13	Cufflinks	transcript	3559265	3559291	1000	.	.	gene_id "CUFF.50279"; transcript_id "CUFF.50279.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000";
+chr13	Cufflinks	exon	3559265	3559291	1000	.	.	gene_id "CUFF.50279"; transcript_id "CUFF.50279.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000";
+chr13	Cufflinks	transcript	3561489	3561515	1000	.	.	gene_id "CUFF.50281"; transcript_id "CUFF.50281.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000";
+chr13	Cufflinks	exon	3561489	3561515	1000	.	.	gene_id "CUFF.50281"; transcript_id "CUFF.50281.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000";
+chr13	Cufflinks	transcript	3561516	3561616	1000	.	.	gene_id "CUFF.50283"; transcript_id "CUFF.50283.1"; FPKM "12.5483969702"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.038038"; cov "0.801980";
+chr13	Cufflinks	exon	3561516	3561616	1000	.	.	gene_id "CUFF.50283"; transcript_id "CUFF.50283.1"; exon_number "1"; FPKM "12.5483969702"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.038038"; cov "0.801980";
+chr13	Cufflinks	transcript	3563788	3563913	1000	.	.	gene_id "CUFF.50285"; transcript_id "CUFF.50285.1"; FPKM "16.7564314774"; frac "1.000000"; conf_lo "1.765464"; conf_hi "31.747399"; cov "1.070920";
+chr13	Cufflinks	exon	3563788	3563913	1000	.	.	gene_id "CUFF.50285"; transcript_id "CUFF.50285.1"; exon_number "1"; FPKM "16.7564314774"; frac "1.000000"; conf_lo "1.765464"; conf_hi "31.747399"; cov "1.070920";
+chr13	Cufflinks	transcript	3564114	3564162	1000	.	.	gene_id "CUFF.50287"; transcript_id "CUFF.50287.1"; FPKM "68.9735017140"; frac "1.000000"; conf_lo "20.201871"; conf_hi "117.745132"; cov "4.408163";
+chr13	Cufflinks	exon	3564114	3564162	1000	.	.	gene_id "CUFF.50287"; transcript_id "CUFF.50287.1"; exon_number "1"; FPKM "68.9735017140"; frac "1.000000"; conf_lo "20.201871"; conf_hi "117.745132"; cov "4.408163";
+chr13	Cufflinks	transcript	5861035	5872268	1000	-	.	gene_id "CUFF.50289"; transcript_id "CUFF.50289.1"; FPKM "7.5439767500"; frac "1.000000"; conf_lo "0.000000"; conf_hi "18.212771"; cov "0.482143";
+chr13	Cufflinks	exon	5861035	5861117	1000	-	.	gene_id "CUFF.50289"; transcript_id "CUFF.50289.1"; exon_number "1"; FPKM "7.5439767500"; frac "1.000000"; conf_lo "0.000000"; conf_hi "18.212771"; cov "0.482143";
+chr13	Cufflinks	exon	5872240	5872268	1000	-	.	gene_id "CUFF.50289"; transcript_id "CUFF.50289.1"; exon_number "2"; FPKM "7.5439767500"; frac "1.000000"; conf_lo "0.000000"; conf_hi "18.212771"; cov "0.482143";
+chr13	Cufflinks	transcript	5864061	5864135	1000	.	.	gene_id "CUFF.50291"; transcript_id "CUFF.50291.1"; FPKM "16.8985079199"; frac "1.000000"; conf_lo "0.000000"; conf_hi "36.411224"; cov "1.080000";
+chr13	Cufflinks	exon	5864061	5864135	1000	.	.	gene_id "CUFF.50291"; transcript_id "CUFF.50291.1"; exon_number "1"; FPKM "16.8985079199"; frac "1.000000"; conf_lo "0.000000"; conf_hi "36.411224"; cov "1.080000";
+chr13	Cufflinks	transcript	5864192	5864585	1000	.	.	gene_id "CUFF.50293"; transcript_id "CUFF.50293.1"; FPKM "18.2280859542"; frac "1.000000"; conf_lo "9.386166"; conf_hi "27.070006"; cov "1.164975";
+chr13	Cufflinks	exon	5864192	5864585	1000	.	.	gene_id "CUFF.50293"; transcript_id "CUFF.50293.1"; exon_number "1"; FPKM "18.2280859542"; frac "1.000000"; conf_lo "9.386166"; conf_hi "27.070006"; cov "1.164975";
+chr13	Cufflinks	transcript	5865070	5865096	1000	.	.	gene_id "CUFF.50295"; transcript_id "CUFF.50295.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	5865070	5865096	1000	.	.	gene_id "CUFF.50295"; transcript_id "CUFF.50295.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	5865442	5866941	1000	+	.	gene_id "CUFF.50297"; transcript_id "CUFF.50297.1"; FPKM "13.2019593124"; frac "1.000000"; conf_lo "0.000000"; conf_hi "28.446269"; cov "0.843750";
+chr13	Cufflinks	exon	5865442	5865510	1000	+	.	gene_id "CUFF.50297"; transcript_id "CUFF.50297.1"; exon_number "1"; FPKM "13.2019593124"; frac "1.000000"; conf_lo "0.000000"; conf_hi "28.446269"; cov "0.843750";
+chr13	Cufflinks	exon	5866915	5866941	1000	+	.	gene_id "CUFF.50297"; transcript_id "CUFF.50297.1"; exon_number "2"; FPKM "13.2019593124"; frac "1.000000"; conf_lo "0.000000"; conf_hi "28.446269"; cov "0.843750";
+chr13	Cufflinks	transcript	5866598	5866661	1000	.	.	gene_id "CUFF.50299"; transcript_id "CUFF.50299.1"; FPKM "92.4137151871"; frac "1.000000"; conf_lo "43.016507"; conf_hi "141.810924"; cov "5.906250";
+chr13	Cufflinks	exon	5866598	5866661	1000	.	.	gene_id "CUFF.50299"; transcript_id "CUFF.50299.1"; exon_number "1"; FPKM "92.4137151871"; frac "1.000000"; conf_lo "43.016507"; conf_hi "141.810924"; cov "5.906250";
+chr13	Cufflinks	transcript	5866756	5866871	1000	.	.	gene_id "CUFF.50301"; transcript_id "CUFF.50301.1"; FPKM "83.7641556375"; frac "1.000000"; conf_lo "48.832088"; conf_hi "118.696223"; cov "5.353448";
+chr13	Cufflinks	exon	5866756	5866871	1000	.	.	gene_id "CUFF.50301"; transcript_id "CUFF.50301.1"; exon_number "1"; FPKM "83.7641556375"; frac "1.000000"; conf_lo "48.832088"; conf_hi "118.696223"; cov "5.353448";
+chr13	Cufflinks	transcript	5866964	5867014	1000	.	.	gene_id "CUFF.50303"; transcript_id "CUFF.50303.1"; FPKM "124.2537347053"; frac "1.000000"; conf_lo "60.089382"; conf_hi "188.418087"; cov "7.941176";
+chr13	Cufflinks	exon	5866964	5867014	1000	.	.	gene_id "CUFF.50303"; transcript_id "CUFF.50303.1"; exon_number "1"; FPKM "124.2537347053"; frac "1.000000"; conf_lo "60.089382"; conf_hi "188.418087"; cov "7.941176";
+chr13	Cufflinks	transcript	5867386	5867412	1000	.	.	gene_id "CUFF.50305"; transcript_id "CUFF.50305.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000";
+chr13	Cufflinks	exon	5867386	5867412	1000	.	.	gene_id "CUFF.50305"; transcript_id "CUFF.50305.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000";
+chr13	Cufflinks	transcript	5867480	5867506	1000	.	.	gene_id "CUFF.50307"; transcript_id "CUFF.50307.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000";
+chr13	Cufflinks	exon	5867480	5867506	1000	.	.	gene_id "CUFF.50307"; transcript_id "CUFF.50307.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000";
+chr13	Cufflinks	transcript	5867688	5867737	1000	.	.	gene_id "CUFF.50309"; transcript_id "CUFF.50309.1"; FPKM "25.3477618799"; frac "1.000000"; conf_lo "0.000000"; conf_hi "54.616836"; cov "1.620000";
+chr13	Cufflinks	exon	5867688	5867737	1000	.	.	gene_id "CUFF.50309"; transcript_id "CUFF.50309.1"; exon_number "1"; FPKM "25.3477618799"; frac "1.000000"; conf_lo "0.000000"; conf_hi "54.616836"; cov "1.620000";
+chr13	Cufflinks	transcript	5867820	5868008	1000	.	.	gene_id "CUFF.50311"; transcript_id "CUFF.50311.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "3.818923"; conf_hi "27.474610"; cov "1.000000";
+chr13	Cufflinks	exon	5867820	5868008	1000	.	.	gene_id "CUFF.50311"; transcript_id "CUFF.50311.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "3.818923"; conf_hi "27.474610"; cov "1.000000";
+chr13	Cufflinks	transcript	5868254	5868314	1000	.	.	gene_id "CUFF.50313"; transcript_id "CUFF.50313.1"; FPKM "13.8512359999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.439842"; cov "0.885246";
+chr13	Cufflinks	exon	5868254	5868314	1000	.	.	gene_id "CUFF.50313"; transcript_id "CUFF.50313.1"; exon_number "1"; FPKM "13.8512359999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.439842"; cov "0.885246";
+chr13	Cufflinks	transcript	5869125	5869300	1000	.	.	gene_id "CUFF.50315"; transcript_id "CUFF.50315.1"; FPKM "88.8131808291"; frac "1.000000"; conf_lo "59.611587"; conf_hi "118.014775"; cov "5.676136";
+chr13	Cufflinks	exon	5869125	5869300	1000	.	.	gene_id "CUFF.50315"; transcript_id "CUFF.50315.1"; exon_number "1"; FPKM "88.8131808291"; frac "1.000000"; conf_lo "59.611587"; conf_hi "118.014775"; cov "5.676136";
+chr13	Cufflinks	transcript	5869455	5869484	1000	.	.	gene_id "CUFF.50317"; transcript_id "CUFF.50317.1"; FPKM "133.7631356353"; frac "1.000000"; conf_lo "46.960728"; conf_hi "220.565544"; cov "8.548931";
+chr13	Cufflinks	exon	5869455	5869484	1000	.	.	gene_id "CUFF.50317"; transcript_id "CUFF.50317.1"; exon_number "1"; FPKM "133.7631356353"; frac "1.000000"; conf_lo "46.960728"; conf_hi "220.565544"; cov "8.548931";
+chr13	Cufflinks	transcript	5869555	5869581	1000	.	.	gene_id "CUFF.50319"; transcript_id "CUFF.50319.1"; FPKM "125.1741327402"; frac "1.000000"; conf_lo "36.662655"; conf_hi "213.685611"; cov "8.000000";
+chr13	Cufflinks	exon	5869555	5869581	1000	.	.	gene_id "CUFF.50319"; transcript_id "CUFF.50319.1"; exon_number "1"; FPKM "125.1741327402"; frac "1.000000"; conf_lo "36.662655"; conf_hi "213.685611"; cov "8.000000";
+chr13	Cufflinks	transcript	6205097	6205155	1000	.	.	gene_id "CUFF.50321"; transcript_id "CUFF.50321.1"; FPKM "14.3207694237"; frac "1.000000"; conf_lo "0.000000"; conf_hi "34.573396"; cov "0.915254";
+chr13	Cufflinks	exon	6205097	6205155	1000	.	.	gene_id "CUFF.50321"; transcript_id "CUFF.50321.1"; exon_number "1"; FPKM "14.3207694237"; frac "1.000000"; conf_lo "0.000000"; conf_hi "34.573396"; cov "0.915254";
+chr13	Cufflinks	transcript	6227260	6227293	1000	.	.	gene_id "CUFF.50323"; transcript_id "CUFF.50323.1"; FPKM "18.6233083846"; frac "1.000000"; conf_lo "0.000000"; conf_hi "49.047086"; cov "1.190234";
+chr13	Cufflinks	exon	6227260	6227293	1000	.	.	gene_id "CUFF.50323"; transcript_id "CUFF.50323.1"; exon_number "1"; FPKM "18.6233083846"; frac "1.000000"; conf_lo "0.000000"; conf_hi "49.047086"; cov "1.190234";
+chr13	Cufflinks	transcript	6553021	6553051	1000	.	.	gene_id "CUFF.50325"; transcript_id "CUFF.50325.1"; FPKM "27.2556579354"; frac "1.000000"; conf_lo "0.000000"; conf_hi "65.800979"; cov "1.741935";
+chr13	Cufflinks	exon	6553021	6553051	1000	.	.	gene_id "CUFF.50325"; transcript_id "CUFF.50325.1"; exon_number "1"; FPKM "27.2556579354"; frac "1.000000"; conf_lo "0.000000"; conf_hi "65.800979"; cov "1.741935";
+chr13	Cufflinks	transcript	6576412	6576471	1000	.	.	gene_id "CUFF.50327"; transcript_id "CUFF.50327.1"; FPKM "14.0820899333"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.997173"; cov "0.900000";
+chr13	Cufflinks	exon	6576412	6576471	1000	.	.	gene_id "CUFF.50327"; transcript_id "CUFF.50327.1"; exon_number "1"; FPKM "14.0820899333"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.997173"; cov "0.900000";
+chr13	Cufflinks	transcript	6576625	6576734	1000	.	.	gene_id "CUFF.50329"; transcript_id "CUFF.50329.1"; FPKM "26.8839898726"; frac "1.000000"; conf_lo "6.561604"; conf_hi "47.206376"; cov "1.718182";
+chr13	Cufflinks	exon	6576625	6576734	1000	.	.	gene_id "CUFF.50329"; transcript_id "CUFF.50329.1"; exon_number "1"; FPKM "26.8839898726"; frac "1.000000"; conf_lo "6.561604"; conf_hi "47.206376"; cov "1.718182";
+chr13	Cufflinks	transcript	6577727	6577820	1000	.	.	gene_id "CUFF.50331"; transcript_id "CUFF.50331.1"; FPKM "31.4599881488"; frac "1.000000"; conf_lo "7.678472"; conf_hi "55.241504"; cov "2.010638";
+chr13	Cufflinks	exon	6577727	6577820	1000	.	.	gene_id "CUFF.50331"; transcript_id "CUFF.50331.1"; exon_number "1"; FPKM "31.4599881488"; frac "1.000000"; conf_lo "7.678472"; conf_hi "55.241504"; cov "2.010638";
+chr13	Cufflinks	transcript	6579706	6579858	1000	.	.	gene_id "CUFF.50333"; transcript_id "CUFF.50333.1"; FPKM "11.0447764182"; frac "1.000000"; conf_lo "0.000000"; conf_hi "22.089553"; cov "0.705882";
+chr13	Cufflinks	exon	6579706	6579858	1000	.	.	gene_id "CUFF.50333"; transcript_id "CUFF.50333.1"; exon_number "1"; FPKM "11.0447764182"; frac "1.000000"; conf_lo "0.000000"; conf_hi "22.089553"; cov "0.705882";
+chr13	Cufflinks	transcript	6580126	6580152	1000	.	.	gene_id "CUFF.50335"; transcript_id "CUFF.50335.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	6580126	6580152	1000	.	.	gene_id "CUFF.50335"; transcript_id "CUFF.50335.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	6580257	6580295	1000	.	.	gene_id "CUFF.50337"; transcript_id "CUFF.50337.1"; FPKM "21.6647537435"; frac "1.000000"; conf_lo "0.000000"; conf_hi "52.303342"; cov "1.384615";
+chr13	Cufflinks	exon	6580257	6580295	1000	.	.	gene_id "CUFF.50337"; transcript_id "CUFF.50337.1"; exon_number "1"; FPKM "21.6647537435"; frac "1.000000"; conf_lo "0.000000"; conf_hi "52.303342"; cov "1.384615";
+chr13	Cufflinks	transcript	6583845	6585843	1000	-	.	gene_id "CUFF.50339"; transcript_id "CUFF.50339.1"; FPKM "163.2242242265"; frac "1.000000"; conf_lo "127.815919"; conf_hi "198.632530"; cov "10.431818";
+chr13	Cufflinks	exon	6583845	6583946	1000	-	.	gene_id "CUFF.50339"; transcript_id "CUFF.50339.1"; exon_number "1"; FPKM "163.2242242265"; frac "1.000000"; conf_lo "127.815919"; conf_hi "198.632530"; cov "10.431818";
+chr13	Cufflinks	exon	6585726	6585843	1000	-	.	gene_id "CUFF.50339"; transcript_id "CUFF.50339.1"; exon_number "2"; FPKM "163.2242242265"; frac "1.000000"; conf_lo "127.815919"; conf_hi "198.632530"; cov "10.431818";
+chr13	Cufflinks	transcript	6586295	6587966	1000	-	.	gene_id "CUFF.50341"; transcript_id "CUFF.50341.1"; FPKM "82.5011329424"; frac "1.000000"; conf_lo "60.835274"; conf_hi "104.166992"; cov "5.272727";
+chr13	Cufflinks	exon	6586295	6586359	1000	-	.	gene_id "CUFF.50341"; transcript_id "CUFF.50341.1"; exon_number "1"; FPKM "82.5011329424"; frac "1.000000"; conf_lo "60.835274"; conf_hi "104.166992"; cov "5.272727";
+chr13	Cufflinks	exon	6587735	6587966	1000	-	.	gene_id "CUFF.50341"; transcript_id "CUFF.50341.1"; exon_number "2"; FPKM "82.5011329424"; frac "1.000000"; conf_lo "60.835274"; conf_hi "104.166992"; cov "5.272727";
+chr13	Cufflinks	transcript	6588113	6588703	1000	.	.	gene_id "CUFF.50343"; transcript_id "CUFF.50343.1"; FPKM "42.8896140100"; frac "1.000000"; conf_lo "31.815563"; conf_hi "53.963665"; cov "2.741117";
+chr13	Cufflinks	exon	6588113	6588703	1000	.	.	gene_id "CUFF.50343"; transcript_id "CUFF.50343.1"; exon_number "1"; FPKM "42.8896140100"; frac "1.000000"; conf_lo "31.815563"; conf_hi "53.963665"; cov "2.741117";
+chr13	Cufflinks	transcript	6588763	6588911	1000	.	.	gene_id "CUFF.50345"; transcript_id "CUFF.50345.1"; FPKM "31.1885213287"; frac "1.000000"; conf_lo "12.381135"; conf_hi "49.995907"; cov "1.993289";
+chr13	Cufflinks	exon	6588763	6588911	1000	.	.	gene_id "CUFF.50345"; transcript_id "CUFF.50345.1"; exon_number "1"; FPKM "31.1885213287"; frac "1.000000"; conf_lo "12.381135"; conf_hi "49.995907"; cov "1.993289";
+chr13	Cufflinks	transcript	6588964	6589091	1000	.	.	gene_id "CUFF.50347"; transcript_id "CUFF.50347.1"; FPKM "13.2019593124"; frac "1.000000"; conf_lo "0.000000"; conf_hi "26.403919"; cov "0.843750";
+chr13	Cufflinks	exon	6588964	6589091	1000	.	.	gene_id "CUFF.50347"; transcript_id "CUFF.50347.1"; exon_number "1"; FPKM "13.2019593124"; frac "1.000000"; conf_lo "0.000000"; conf_hi "26.403919"; cov "0.843750";
+chr13	Cufflinks	transcript	6589153	6589383	1000	.	.	gene_id "CUFF.50349"; transcript_id "CUFF.50349.1"; FPKM "12.8018999393"; frac "1.000000"; conf_lo "3.124573"; conf_hi "22.479227"; cov "0.818182";
+chr13	Cufflinks	exon	6589153	6589383	1000	.	.	gene_id "CUFF.50349"; transcript_id "CUFF.50349.1"; exon_number "1"; FPKM "12.8018999393"; frac "1.000000"; conf_lo "3.124573"; conf_hi "22.479227"; cov "0.818182";
+chr13	Cufflinks	transcript	6589994	6590086	1000	.	.	gene_id "CUFF.50351"; transcript_id "CUFF.50351.1"; FPKM "9.0852193118"; frac "1.000000"; conf_lo "0.000000"; conf_hi "21.933660"; cov "0.580645";
+chr13	Cufflinks	exon	6589994	6590086	1000	.	.	gene_id "CUFF.50351"; transcript_id "CUFF.50351.1"; exon_number "1"; FPKM "9.0852193118"; frac "1.000000"; conf_lo "0.000000"; conf_hi "21.933660"; cov "0.580645";
+chr13	Cufflinks	transcript	6590329	6590359	1000	.	.	gene_id "CUFF.50353"; transcript_id "CUFF.50353.1"; FPKM "27.2556579354"; frac "1.000000"; conf_lo "0.000000"; conf_hi "65.800979"; cov "1.741935";
+chr13	Cufflinks	exon	6590329	6590359	1000	.	.	gene_id "CUFF.50353"; transcript_id "CUFF.50353.1"; exon_number "1"; FPKM "27.2556579354"; frac "1.000000"; conf_lo "0.000000"; conf_hi "65.800979"; cov "1.741935";
+chr13	Cufflinks	transcript	6590592	6590645	1000	.	.	gene_id "CUFF.50355"; transcript_id "CUFF.50355.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "37.774636"; cov "1.000000";
+chr13	Cufflinks	exon	6590592	6590645	1000	.	.	gene_id "CUFF.50355"; transcript_id "CUFF.50355.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "37.774636"; cov "1.000000";
+chr13	Cufflinks	transcript	6590963	6591056	1000	.	.	gene_id "CUFF.50357"; transcript_id "CUFF.50357.1"; FPKM "17.9771360850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.954272"; cov "1.148936";
+chr13	Cufflinks	exon	6590963	6591056	1000	.	.	gene_id "CUFF.50357"; transcript_id "CUFF.50357.1"; exon_number "1"; FPKM "17.9771360850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.954272"; cov "1.148936";
+chr13	Cufflinks	transcript	6591182	6591208	1000	.	.	gene_id "CUFF.50359"; transcript_id "CUFF.50359.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	6591182	6591208	1000	.	.	gene_id "CUFF.50359"; transcript_id "CUFF.50359.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	6591662	6591724	1000	.	.	gene_id "CUFF.50361"; transcript_id "CUFF.50361.1"; FPKM "13.4115142222"; frac "1.000000"; conf_lo "0.000000"; conf_hi "32.378260"; cov "0.857143";
+chr13	Cufflinks	exon	6591662	6591724	1000	.	.	gene_id "CUFF.50361"; transcript_id "CUFF.50361.1"; exon_number "1"; FPKM "13.4115142222"; frac "1.000000"; conf_lo "0.000000"; conf_hi "32.378260"; cov "0.857143";
+chr13	Cufflinks	transcript	6592773	6592874	1000	.	.	gene_id "CUFF.50363"; transcript_id "CUFF.50363.1"; FPKM "12.4253734705"; frac "1.000000"; conf_lo "0.000000"; conf_hi "26.772959"; cov "0.794118";
+chr13	Cufflinks	exon	6592773	6592874	1000	.	.	gene_id "CUFF.50363"; transcript_id "CUFF.50363.1"; exon_number "1"; FPKM "12.4253734705"; frac "1.000000"; conf_lo "0.000000"; conf_hi "26.772959"; cov "0.794118";
+chr13	Cufflinks	transcript	6580385	6581757	1000	-	.	gene_id "CUFF.50365"; transcript_id "CUFF.50365.1"; FPKM "324.9135847836"; frac "1.000000"; conf_lo "293.684884"; conf_hi "356.142286"; cov "20.765542";
+chr13	Cufflinks	exon	6580385	6580838	1000	-	.	gene_id "CUFF.50365"; transcript_id "CUFF.50365.1"; exon_number "1"; FPKM "324.9135847836"; frac "1.000000"; conf_lo "293.684884"; conf_hi "356.142286"; cov "20.765542";
+chr13	Cufflinks	exon	6581649	6581757	1000	-	.	gene_id "CUFF.50365"; transcript_id "CUFF.50365.1"; exon_number "2"; FPKM "324.9135847836"; frac "1.000000"; conf_lo "293.684884"; conf_hi "356.142286"; cov "20.765542";
+chr13	Cufflinks	transcript	6594213	6594242	1000	.	.	gene_id "CUFF.50367"; transcript_id "CUFF.50367.1"; FPKM "28.1641798665"; frac "1.000000"; conf_lo "0.000000"; conf_hi "67.994345"; cov "1.800000";
+chr13	Cufflinks	exon	6594213	6594242	1000	.	.	gene_id "CUFF.50367"; transcript_id "CUFF.50367.1"; exon_number "1"; FPKM "28.1641798665"; frac "1.000000"; conf_lo "0.000000"; conf_hi "67.994345"; cov "1.800000";
+chr13	Cufflinks	transcript	6594897	6594938	1000	.	.	gene_id "CUFF.50369"; transcript_id "CUFF.50369.1"; FPKM "20.1172713332"; frac "1.000000"; conf_lo "0.000000"; conf_hi "48.567389"; cov "1.285714";
+chr13	Cufflinks	exon	6594897	6594938	1000	.	.	gene_id "CUFF.50369"; transcript_id "CUFF.50369.1"; exon_number "1"; FPKM "20.1172713332"; frac "1.000000"; conf_lo "0.000000"; conf_hi "48.567389"; cov "1.285714";
+chr13	Cufflinks	transcript	6594742	6594836	1000	.	.	gene_id "CUFF.50371"; transcript_id "CUFF.50371.1"; FPKM "13.3409273052"; frac "1.000000"; conf_lo "0.000000"; conf_hi "28.745703"; cov "0.852632";
+chr13	Cufflinks	exon	6594742	6594836	1000	.	.	gene_id "CUFF.50371"; transcript_id "CUFF.50371.1"; exon_number "1"; FPKM "13.3409273052"; frac "1.000000"; conf_lo "0.000000"; conf_hi "28.745703"; cov "0.852632";
+chr13	Cufflinks	transcript	6595072	6595132	1000	.	.	gene_id "CUFF.50373"; transcript_id "CUFF.50373.1"; FPKM "20.7768539999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "44.767898"; cov "1.327869";
+chr13	Cufflinks	exon	6595072	6595132	1000	.	.	gene_id "CUFF.50373"; transcript_id "CUFF.50373.1"; exon_number "1"; FPKM "20.7768539999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "44.767898"; cov "1.327869";
+chr13	Cufflinks	transcript	6595199	6595225	1000	.	.	gene_id "CUFF.50375"; transcript_id "CUFF.50375.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000";
+chr13	Cufflinks	exon	6595199	6595225	1000	.	.	gene_id "CUFF.50375"; transcript_id "CUFF.50375.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000";
+chr13	Cufflinks	transcript	6595246	6595272	1000	.	.	gene_id "CUFF.50377"; transcript_id "CUFF.50377.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000";
+chr13	Cufflinks	exon	6595246	6595272	1000	.	.	gene_id "CUFF.50377"; transcript_id "CUFF.50377.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000";
+chr13	Cufflinks	transcript	6598001	6598027	1000	.	.	gene_id "CUFF.50379"; transcript_id "CUFF.50379.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000";
+chr13	Cufflinks	exon	6598001	6598027	1000	.	.	gene_id "CUFF.50379"; transcript_id "CUFF.50379.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000";
+chr13	Cufflinks	transcript	6601936	6601990	1000	.	.	gene_id "CUFF.50381"; transcript_id "CUFF.50381.1"; FPKM "15.3622799272"; frac "1.000000"; conf_lo "0.000000"; conf_hi "37.087825"; cov "0.981818";
+chr13	Cufflinks	exon	6601936	6601990	1000	.	.	gene_id "CUFF.50381"; transcript_id "CUFF.50381.1"; exon_number "1"; FPKM "15.3622799272"; frac "1.000000"; conf_lo "0.000000"; conf_hi "37.087825"; cov "0.981818";
+chr13	Cufflinks	transcript	6604226	6604297	1000	.	.	gene_id "CUFF.50383"; transcript_id "CUFF.50383.1"; FPKM "17.6026124166"; frac "1.000000"; conf_lo "0.000000"; conf_hi "37.928358"; cov "1.125000";
+chr13	Cufflinks	exon	6604226	6604297	1000	.	.	gene_id "CUFF.50383"; transcript_id "CUFF.50383.1"; exon_number "1"; FPKM "17.6026124166"; frac "1.000000"; conf_lo "0.000000"; conf_hi "37.928358"; cov "1.125000";
+chr13	Cufflinks	transcript	6616305	6616331	1000	.	.	gene_id "CUFF.50385"; transcript_id "CUFF.50385.1"; FPKM "46.9402997776"; frac "1.000000"; conf_lo "0.000000"; conf_hi "101.142289"; cov "3.000000";
+chr13	Cufflinks	exon	6616305	6616331	1000	.	.	gene_id "CUFF.50385"; transcript_id "CUFF.50385.1"; exon_number "1"; FPKM "46.9402997776"; frac "1.000000"; conf_lo "0.000000"; conf_hi "101.142289"; cov "3.000000";
+chr13	Cufflinks	transcript	6616841	6616921	1000	.	.	gene_id "CUFF.50387"; transcript_id "CUFF.50387.1"; FPKM "5.2155888642"; frac "1.000000"; conf_lo "0.000000"; conf_hi "15.646767"; cov "0.333333";
+chr13	Cufflinks	exon	6616841	6616921	1000	.	.	gene_id "CUFF.50387"; transcript_id "CUFF.50387.1"; exon_number "1"; FPKM "5.2155888642"; frac "1.000000"; conf_lo "0.000000"; conf_hi "15.646767"; cov "0.333333";
+chr13	Cufflinks	transcript	6617878	6617990	1000	.	.	gene_id "CUFF.50389"; transcript_id "CUFF.50389.1"; FPKM "11.2158238407"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.166742"; cov "0.716814";
+chr13	Cufflinks	exon	6617878	6617990	1000	.	.	gene_id "CUFF.50389"; transcript_id "CUFF.50389.1"; exon_number "1"; FPKM "11.2158238407"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.166742"; cov "0.716814";
+chr13	Cufflinks	transcript	6618127	6618156	1000	.	.	gene_id "CUFF.50391"; transcript_id "CUFF.50391.1"; FPKM "28.1641798665"; frac "1.000000"; conf_lo "0.000000"; conf_hi "67.994345"; cov "1.800000";
+chr13	Cufflinks	exon	6618127	6618156	1000	.	.	gene_id "CUFF.50391"; transcript_id "CUFF.50391.1"; exon_number "1"; FPKM "28.1641798665"; frac "1.000000"; conf_lo "0.000000"; conf_hi "67.994345"; cov "1.800000";
+chr13	Cufflinks	transcript	6618432	6618463	1000	.	.	gene_id "CUFF.50393"; transcript_id "CUFF.50393.1"; FPKM "26.4039186249"; frac "1.000000"; conf_lo "0.000000"; conf_hi "63.744698"; cov "1.687500";
+chr13	Cufflinks	exon	6618432	6618463	1000	.	.	gene_id "CUFF.50393"; transcript_id "CUFF.50393.1"; exon_number "1"; FPKM "26.4039186249"; frac "1.000000"; conf_lo "0.000000"; conf_hi "63.744698"; cov "1.687500";
+chr13	Cufflinks	transcript	6618765	6618809	1000	.	.	gene_id "CUFF.50395"; transcript_id "CUFF.50395.1"; FPKM "28.1641798665"; frac "1.000000"; conf_lo "0.000000"; conf_hi "60.685374"; cov "1.800000";
+chr13	Cufflinks	exon	6618765	6618809	1000	.	.	gene_id "CUFF.50395"; transcript_id "CUFF.50395.1"; exon_number "1"; FPKM "28.1641798665"; frac "1.000000"; conf_lo "0.000000"; conf_hi "60.685374"; cov "1.800000";
+chr13	Cufflinks	transcript	6620226	6620259	1000	.	.	gene_id "CUFF.50397"; transcript_id "CUFF.50397.1"; FPKM "24.8507469411"; frac "1.000000"; conf_lo "0.000000"; conf_hi "59.995010"; cov "1.588235";
+chr13	Cufflinks	exon	6620226	6620259	1000	.	.	gene_id "CUFF.50397"; transcript_id "CUFF.50397.1"; exon_number "1"; FPKM "24.8507469411"; frac "1.000000"; conf_lo "0.000000"; conf_hi "59.995010"; cov "1.588235";
+chr13	Cufflinks	transcript	6795860	6795886	1000	.	.	gene_id "CUFF.50399"; transcript_id "CUFF.50399.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	6795860	6795886	1000	.	.	gene_id "CUFF.50399"; transcript_id "CUFF.50399.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	7155940	7155966	1000	.	.	gene_id "CUFF.50401"; transcript_id "CUFF.50401.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	7155940	7155966	1000	.	.	gene_id "CUFF.50401"; transcript_id "CUFF.50401.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	7676033	7676123	1000	.	.	gene_id "CUFF.50403"; transcript_id "CUFF.50403.1"; FPKM "9.2848944615"; frac "1.000000"; conf_lo "0.000000"; conf_hi "22.415718"; cov "0.593407";
+chr13	Cufflinks	exon	7676033	7676123	1000	.	.	gene_id "CUFF.50403"; transcript_id "CUFF.50403.1"; exon_number "1"; FPKM "9.2848944615"; frac "1.000000"; conf_lo "0.000000"; conf_hi "22.415718"; cov "0.593407";
+chr13	Cufflinks	transcript	8202861	8202907	1000	.	.	gene_id "CUFF.50405"; transcript_id "CUFF.50405.1"; FPKM "17.9771360850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "43.400646"; cov "1.148936";
+chr13	Cufflinks	exon	8202861	8202907	1000	.	.	gene_id "CUFF.50405"; transcript_id "CUFF.50405.1"; exon_number "1"; FPKM "17.9771360850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "43.400646"; cov "1.148936";
+chr13	Cufflinks	transcript	8210506	8210549	1000	.	.	gene_id "CUFF.50407"; transcript_id "CUFF.50407.1"; FPKM "19.2028499090"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.359781"; cov "1.227273";
+chr13	Cufflinks	exon	8210506	8210549	1000	.	.	gene_id "CUFF.50407"; transcript_id "CUFF.50407.1"; exon_number "1"; FPKM "19.2028499090"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.359781"; cov "1.227273";
+chr13	Cufflinks	transcript	8240024	8240081	1000	.	.	gene_id "CUFF.50409"; transcript_id "CUFF.50409.1"; FPKM "14.5676792413"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.169489"; cov "0.931034";
+chr13	Cufflinks	exon	8240024	8240081	1000	.	.	gene_id "CUFF.50409"; transcript_id "CUFF.50409.1"; exon_number "1"; FPKM "14.5676792413"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.169489"; cov "0.931034";
+chr13	Cufflinks	transcript	8277443	8277522	1000	.	.	gene_id "CUFF.50411"; transcript_id "CUFF.50411.1"; FPKM "10.5615674500"; frac "1.000000"; conf_lo "0.000000"; conf_hi "25.497879"; cov "0.675000";
+chr13	Cufflinks	exon	8277443	8277522	1000	.	.	gene_id "CUFF.50411"; transcript_id "CUFF.50411.1"; exon_number "1"; FPKM "10.5615674500"; frac "1.000000"; conf_lo "0.000000"; conf_hi "25.497879"; cov "0.675000";
+chr13	Cufflinks	transcript	8277606	8277673	1000	.	.	gene_id "CUFF.50413"; transcript_id "CUFF.50413.1"; FPKM "24.8507469411"; frac "1.000000"; conf_lo "0.000000"; conf_hi "49.701494"; cov "1.588235";
+chr13	Cufflinks	exon	8277606	8277673	1000	.	.	gene_id "CUFF.50413"; transcript_id "CUFF.50413.1"; exon_number "1"; FPKM "24.8507469411"; frac "1.000000"; conf_lo "0.000000"; conf_hi "49.701494"; cov "1.588235";
+chr13	Cufflinks	transcript	8277822	8277848	1000	.	.	gene_id "CUFF.50415"; transcript_id "CUFF.50415.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	8277822	8277848	1000	.	.	gene_id "CUFF.50415"; transcript_id "CUFF.50415.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	8277918	8277977	1000	.	.	gene_id "CUFF.50417"; transcript_id "CUFF.50417.1"; FPKM "21.1231348999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.514030"; cov "1.350000";
+chr13	Cufflinks	exon	8277918	8277977	1000	.	.	gene_id "CUFF.50417"; transcript_id "CUFF.50417.1"; exon_number "1"; FPKM "21.1231348999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.514030"; cov "1.350000";
+chr13	Cufflinks	transcript	8278095	8278121	1000	.	.	gene_id "CUFF.50419"; transcript_id "CUFF.50419.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	8278095	8278121	1000	.	.	gene_id "CUFF.50419"; transcript_id "CUFF.50419.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	8278201	8278350	1000	.	.	gene_id "CUFF.50421"; transcript_id "CUFF.50421.1"; FPKM "14.0820899333"; frac "1.000000"; conf_lo "1.486686"; conf_hi "26.677494"; cov "0.900000";
+chr13	Cufflinks	exon	8278201	8278350	1000	.	.	gene_id "CUFF.50421"; transcript_id "CUFF.50421.1"; exon_number "1"; FPKM "14.0820899333"; frac "1.000000"; conf_lo "1.486686"; conf_hi "26.677494"; cov "0.900000";
+chr13	Cufflinks	transcript	8278906	8278932	1000	.	.	gene_id "CUFF.50423"; transcript_id "CUFF.50423.1"; FPKM "46.9402997776"; frac "1.000000"; conf_lo "0.000000"; conf_hi "101.142289"; cov "3.000000";
+chr13	Cufflinks	exon	8278906	8278932	1000	.	.	gene_id "CUFF.50423"; transcript_id "CUFF.50423.1"; exon_number "1"; FPKM "46.9402997776"; frac "1.000000"; conf_lo "0.000000"; conf_hi "101.142289"; cov "3.000000";
+chr13	Cufflinks	transcript	8281673	8281699	1000	.	.	gene_id "CUFF.50425"; transcript_id "CUFF.50425.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	8281673	8281699	1000	.	.	gene_id "CUFF.50425"; transcript_id "CUFF.50425.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	8311626	8311652	1000	.	.	gene_id "CUFF.50427"; transcript_id "CUFF.50427.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	8311626	8311652	1000	.	.	gene_id "CUFF.50427"; transcript_id "CUFF.50427.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	8321948	8321974	1000	.	.	gene_id "CUFF.50429"; transcript_id "CUFF.50429.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	8321948	8321974	1000	.	.	gene_id "CUFF.50429"; transcript_id "CUFF.50429.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	8330761	8330829	1000	.	.	gene_id "CUFF.50431"; transcript_id "CUFF.50431.1"; FPKM "12.2452955941"; frac "1.000000"; conf_lo "0.000000"; conf_hi "29.562759"; cov "0.782609";
+chr13	Cufflinks	exon	8330761	8330829	1000	.	.	gene_id "CUFF.50431"; transcript_id "CUFF.50431.1"; exon_number "1"; FPKM "12.2452955941"; frac "1.000000"; conf_lo "0.000000"; conf_hi "29.562759"; cov "0.782609";
+chr13	Cufflinks	transcript	8334495	8335002	1000	.	.	gene_id "CUFF.50433"; transcript_id "CUFF.50433.1"; FPKM "24.1169650432"; frac "1.000000"; conf_lo "15.160149"; conf_hi "33.073781"; cov "1.541339";
+chr13	Cufflinks	exon	8334495	8335002	1000	.	.	gene_id "CUFF.50433"; transcript_id "CUFF.50433.1"; exon_number "1"; FPKM "24.1169650432"; frac "1.000000"; conf_lo "15.160149"; conf_hi "33.073781"; cov "1.541339";
+chr13	Cufflinks	transcript	8335517	8335639	1000	.	.	gene_id "CUFF.50435"; transcript_id "CUFF.50435.1"; FPKM "13.7386243251"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.477249"; cov "0.878049";
+chr13	Cufflinks	exon	8335517	8335639	1000	.	.	gene_id "CUFF.50435"; transcript_id "CUFF.50435.1"; exon_number "1"; FPKM "13.7386243251"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.477249"; cov "0.878049";
+chr13	Cufflinks	transcript	8390965	8390991	1000	.	.	gene_id "CUFF.50437"; transcript_id "CUFF.50437.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	8390965	8390991	1000	.	.	gene_id "CUFF.50437"; transcript_id "CUFF.50437.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	8431938	8432046	1000	.	.	gene_id "CUFF.50439"; transcript_id "CUFF.50439.1"; FPKM "15.5032182752"; frac "1.000000"; conf_lo "0.000000"; conf_hi "31.006437"; cov "0.990826";
+chr13	Cufflinks	exon	8431938	8432046	1000	.	.	gene_id "CUFF.50439"; transcript_id "CUFF.50439.1"; exon_number "1"; FPKM "15.5032182752"; frac "1.000000"; conf_lo "0.000000"; conf_hi "31.006437"; cov "0.990826";
+chr13	Cufflinks	transcript	8431688	8431754	1000	.	.	gene_id "CUFF.50441"; transcript_id "CUFF.50441.1"; FPKM "12.6108268059"; frac "1.000000"; conf_lo "0.000000"; conf_hi "30.445229"; cov "0.805970";
+chr13	Cufflinks	exon	8431688	8431754	1000	.	.	gene_id "CUFF.50441"; transcript_id "CUFF.50441.1"; exon_number "1"; FPKM "12.6108268059"; frac "1.000000"; conf_lo "0.000000"; conf_hi "30.445229"; cov "0.805970";
+chr13	Cufflinks	transcript	8432289	8432315	1000	.	.	gene_id "CUFF.50443"; transcript_id "CUFF.50443.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000";
+chr13	Cufflinks	exon	8432289	8432315	1000	.	.	gene_id "CUFF.50443"; transcript_id "CUFF.50443.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000";
+chr13	Cufflinks	transcript	8432115	8432188	1000	.	.	gene_id "CUFF.50445"; transcript_id "CUFF.50445.1"; FPKM "11.4179107567"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.565275"; cov "0.729730";
+chr13	Cufflinks	exon	8432115	8432188	1000	.	.	gene_id "CUFF.50445"; transcript_id "CUFF.50445.1"; exon_number "1"; FPKM "11.4179107567"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.565275"; cov "0.729730";
+chr13	Cufflinks	transcript	8463173	8463199	1000	.	.	gene_id "CUFF.50447"; transcript_id "CUFF.50447.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	8463173	8463199	1000	.	.	gene_id "CUFF.50447"; transcript_id "CUFF.50447.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	8482167	8482193	1000	.	.	gene_id "CUFF.50449"; transcript_id "CUFF.50449.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	8482167	8482193	1000	.	.	gene_id "CUFF.50449"; transcript_id "CUFF.50449.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	8518188	8518214	1000	.	.	gene_id "CUFF.50451"; transcript_id "CUFF.50451.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	8518188	8518214	1000	.	.	gene_id "CUFF.50451"; transcript_id "CUFF.50451.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	8619978	8620005	1000	.	.	gene_id "CUFF.50453"; transcript_id "CUFF.50453.1"; FPKM "30.1759069999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "72.851084"; cov "1.928571";
+chr13	Cufflinks	exon	8619978	8620005	1000	.	.	gene_id "CUFF.50453"; transcript_id "CUFF.50453.1"; exon_number "1"; FPKM "30.1759069999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "72.851084"; cov "1.928571";
+chr13	Cufflinks	transcript	8669464	8669490	1000	.	.	gene_id "CUFF.50455"; transcript_id "CUFF.50455.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	8669464	8669490	1000	.	.	gene_id "CUFF.50455"; transcript_id "CUFF.50455.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	8705396	8705459	1000	.	.	gene_id "CUFF.50457"; transcript_id "CUFF.50457.1"; FPKM "13.2019593124"; frac "1.000000"; conf_lo "0.000000"; conf_hi "31.872349"; cov "0.843750";
+chr13	Cufflinks	exon	8705396	8705459	1000	.	.	gene_id "CUFF.50457"; transcript_id "CUFF.50457.1"; exon_number "1"; FPKM "13.2019593124"; frac "1.000000"; conf_lo "0.000000"; conf_hi "31.872349"; cov "0.843750";
+chr13	Cufflinks	transcript	8719319	8719345	1000	.	.	gene_id "CUFF.50459"; transcript_id "CUFF.50459.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	8719319	8719345	1000	.	.	gene_id "CUFF.50459"; transcript_id "CUFF.50459.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	8766868	8767005	1000	.	.	gene_id "CUFF.50461"; transcript_id "CUFF.50461.1"; FPKM "12.2452955941"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.490591"; cov "0.782609";
+chr13	Cufflinks	exon	8766868	8767005	1000	.	.	gene_id "CUFF.50461"; transcript_id "CUFF.50461.1"; exon_number "1"; FPKM "12.2452955941"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.490591"; cov "0.782609";
+chr13	Cufflinks	transcript	8767194	8767393	1000	.	.	gene_id "CUFF.50463"; transcript_id "CUFF.50463.1"; FPKM "12.6738809399"; frac "1.000000"; conf_lo "2.325700"; conf_hi "23.022061"; cov "0.810000";
+chr13	Cufflinks	exon	8767194	8767393	1000	.	.	gene_id "CUFF.50463"; transcript_id "CUFF.50463.1"; exon_number "1"; FPKM "12.6738809399"; frac "1.000000"; conf_lo "2.325700"; conf_hi "23.022061"; cov "0.810000";
+chr13	Cufflinks	transcript	8767461	8767531	1000	.	.	gene_id "CUFF.50465"; transcript_id "CUFF.50465.1"; FPKM "17.8505365351"; frac "1.000000"; conf_lo "0.000000"; conf_hi "38.462561"; cov "1.140845";
+chr13	Cufflinks	exon	8767461	8767531	1000	.	.	gene_id "CUFF.50465"; transcript_id "CUFF.50465.1"; exon_number "1"; FPKM "17.8505365351"; frac "1.000000"; conf_lo "0.000000"; conf_hi "38.462561"; cov "1.140845";
+chr13	Cufflinks	transcript	8767695	8767885	1000	.	.	gene_id "CUFF.50467"; transcript_id "CUFF.50467.1"; FPKM "17.6947726910"; frac "1.000000"; conf_lo "5.182679"; conf_hi "30.206866"; cov "1.130890";
+chr13	Cufflinks	exon	8767695	8767885	1000	.	.	gene_id "CUFF.50467"; transcript_id "CUFF.50467.1"; exon_number "1"; FPKM "17.6947726910"; frac "1.000000"; conf_lo "5.182679"; conf_hi "30.206866"; cov "1.130890";
+chr13	Cufflinks	transcript	8767947	8767992	1000	.	.	gene_id "CUFF.50469"; transcript_id "CUFF.50469.1"; FPKM "27.5519150868"; frac "1.000000"; conf_lo "0.000000"; conf_hi "59.366126"; cov "1.760870";
+chr13	Cufflinks	exon	8767947	8767992	1000	.	.	gene_id "CUFF.50469"; transcript_id "CUFF.50469.1"; exon_number "1"; FPKM "27.5519150868"; frac "1.000000"; conf_lo "0.000000"; conf_hi "59.366126"; cov "1.760870";
+chr13	Cufflinks	transcript	8784118	8784193	1000	.	.	gene_id "CUFF.50471"; transcript_id "CUFF.50471.1"; FPKM "16.6761591315"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.932129"; cov "1.065789";
+chr13	Cufflinks	exon	8784118	8784193	1000	.	.	gene_id "CUFF.50471"; transcript_id "CUFF.50471.1"; exon_number "1"; FPKM "16.6761591315"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.932129"; cov "1.065789";
+chr13	Cufflinks	transcript	8802391	8802417	1000	.	.	gene_id "CUFF.50473"; transcript_id "CUFF.50473.1"; FPKM "109.5273661476"; frac "1.000000"; conf_lo "26.732460"; conf_hi "192.322273"; cov "7.000000";
+chr13	Cufflinks	exon	8802391	8802417	1000	.	.	gene_id "CUFF.50473"; transcript_id "CUFF.50473.1"; exon_number "1"; FPKM "109.5273661476"; frac "1.000000"; conf_lo "26.732460"; conf_hi "192.322273"; cov "7.000000";
+chr13	Cufflinks	transcript	8802581	8802610	1000	.	.	gene_id "CUFF.50475"; transcript_id "CUFF.50475.1"; FPKM "154.9029892659"; frac "1.000000"; conf_lo "61.492972"; conf_hi "248.313006"; cov "9.900000";
+chr13	Cufflinks	exon	8802581	8802610	1000	.	.	gene_id "CUFF.50475"; transcript_id "CUFF.50475.1"; exon_number "1"; FPKM "154.9029892659"; frac "1.000000"; conf_lo "61.492972"; conf_hi "248.313006"; cov "9.900000";
+chr13	Cufflinks	transcript	8803098	8803283	1000	.	.	gene_id "CUFF.50477"; transcript_id "CUFF.50477.1"; FPKM "18.1704386236"; frac "1.000000"; conf_lo "5.321998"; conf_hi "31.018879"; cov "1.161290";
+chr13	Cufflinks	exon	8803098	8803283	1000	.	.	gene_id "CUFF.50477"; transcript_id "CUFF.50477.1"; exon_number "1"; FPKM "18.1704386236"; frac "1.000000"; conf_lo "5.321998"; conf_hi "31.018879"; cov "1.161290";
+chr13	Cufflinks	transcript	8803340	8803703	1000	.	.	gene_id "CUFF.50479"; transcript_id "CUFF.50479.1"; FPKM "12.7584623804"; frac "1.000000"; conf_lo "5.062328"; conf_hi "20.454597"; cov "0.815406";
+chr13	Cufflinks	exon	8803340	8803703	1000	.	.	gene_id "CUFF.50479"; transcript_id "CUFF.50479.1"; exon_number "1"; FPKM "12.7584623804"; frac "1.000000"; conf_lo "5.062328"; conf_hi "20.454597"; cov "0.815406";
+chr13	Cufflinks	transcript	8803760	8819743	1000	+	.	gene_id "CUFF.50481"; transcript_id "CUFF.50481.1"; FPKM "15.1783005269"; frac "1.000000"; conf_lo "2.785270"; conf_hi "27.571331"; cov "0.970060";
+chr13	Cufflinks	exon	8803760	8803879	1000	+	.	gene_id "CUFF.50481"; transcript_id "CUFF.50481.1"; exon_number "1"; FPKM "15.1783005269"; frac "1.000000"; conf_lo "2.785270"; conf_hi "27.571331"; cov "0.970060";
+chr13	Cufflinks	exon	8819697	8819743	1000	+	.	gene_id "CUFF.50481"; transcript_id "CUFF.50481.1"; exon_number "2"; FPKM "15.1783005269"; frac "1.000000"; conf_lo "2.785270"; conf_hi "27.571331"; cov "0.970060";
+chr13	Cufflinks	transcript	8819122	8819153	1000	.	.	gene_id "CUFF.50483"; transcript_id "CUFF.50483.1"; FPKM "26.4039186249"; frac "1.000000"; conf_lo "0.000000"; conf_hi "63.744698"; cov "1.687500";
+chr13	Cufflinks	exon	8819122	8819153	1000	.	.	gene_id "CUFF.50483"; transcript_id "CUFF.50483.1"; exon_number "1"; FPKM "26.4039186249"; frac "1.000000"; conf_lo "0.000000"; conf_hi "63.744698"; cov "1.687500";
+chr13	Cufflinks	transcript	8831114	8831142	1000	.	.	gene_id "CUFF.50485"; transcript_id "CUFF.50485.1"; FPKM "29.1353584826"; frac "1.000000"; conf_lo "0.000000"; conf_hi "70.338978"; cov "1.862069";
+chr13	Cufflinks	exon	8831114	8831142	1000	.	.	gene_id "CUFF.50485"; transcript_id "CUFF.50485.1"; exon_number "1"; FPKM "29.1353584826"; frac "1.000000"; conf_lo "0.000000"; conf_hi "70.338978"; cov "1.862069";
+chr13	Cufflinks	transcript	8831216	8831252	1000	.	.	gene_id "CUFF.50487"; transcript_id "CUFF.50487.1"; FPKM "34.2537322701"; frac "1.000000"; conf_lo "0.000000"; conf_hi "73.806535"; cov "2.189189";
+chr13	Cufflinks	exon	8831216	8831252	1000	.	.	gene_id "CUFF.50487"; transcript_id "CUFF.50487.1"; exon_number "1"; FPKM "34.2537322701"; frac "1.000000"; conf_lo "0.000000"; conf_hi "73.806535"; cov "2.189189";
+chr13	Cufflinks	transcript	8831404	8831522	1000	.	.	gene_id "CUFF.50489"; transcript_id "CUFF.50489.1"; FPKM "17.7505335293"; frac "1.000000"; conf_lo "1.873974"; conf_hi "33.627093"; cov "1.134454";
+chr13	Cufflinks	exon	8831404	8831522	1000	.	.	gene_id "CUFF.50489"; transcript_id "CUFF.50489.1"; exon_number "1"; FPKM "17.7505335293"; frac "1.000000"; conf_lo "1.873974"; conf_hi "33.627093"; cov "1.134454";
+chr13	Cufflinks	transcript	8849862	8849935	1000	.	.	gene_id "CUFF.50491"; transcript_id "CUFF.50491.1"; FPKM "17.1268661351"; frac "1.000000"; conf_lo "0.000000"; conf_hi "36.903268"; cov "1.094595";
+chr13	Cufflinks	exon	8849862	8849935	1000	.	.	gene_id "CUFF.50491"; transcript_id "CUFF.50491.1"; exon_number "1"; FPKM "17.1268661351"; frac "1.000000"; conf_lo "0.000000"; conf_hi "36.903268"; cov "1.094595";
+chr13	Cufflinks	transcript	8850038	8850347	1000	.	.	gene_id "CUFF.50493"; transcript_id "CUFF.50493.1"; FPKM "9.5394802774"; frac "1.000000"; conf_lo "2.328311"; conf_hi "16.750650"; cov "0.609677";
+chr13	Cufflinks	exon	8850038	8850347	1000	.	.	gene_id "CUFF.50493"; transcript_id "CUFF.50493.1"; exon_number "1"; FPKM "9.5394802774"; frac "1.000000"; conf_lo "2.328311"; conf_hi "16.750650"; cov "0.609677";
+chr13	Cufflinks	transcript	8864952	8864979	1000	.	.	gene_id "CUFF.50495"; transcript_id "CUFF.50495.1"; FPKM "75.4397674996"; frac "1.000000"; conf_lo "7.964388"; conf_hi "142.915147"; cov "4.821429";
+chr13	Cufflinks	exon	8864952	8864979	1000	.	.	gene_id "CUFF.50495"; transcript_id "CUFF.50495.1"; exon_number "1"; FPKM "75.4397674996"; frac "1.000000"; conf_lo "7.964388"; conf_hi "142.915147"; cov "4.821429";
+chr13	Cufflinks	transcript	8855128	8864773	1000	-	.	gene_id "CUFF.50497"; transcript_id "CUFF.50497.1"; FPKM "6.4009499697"; frac "1.000000"; conf_lo "0.000000"; conf_hi "19.202850"; cov "0.409091";
+chr13	Cufflinks	exon	8855128	8855158	1000	-	.	gene_id "CUFF.50497"; transcript_id "CUFF.50497.1"; exon_number "1"; FPKM "6.4009499697"; frac "1.000000"; conf_lo "0.000000"; conf_hi "19.202850"; cov "0.409091";
+chr13	Cufflinks	exon	8864739	8864773	1000	-	.	gene_id "CUFF.50497"; transcript_id "CUFF.50497.1"; exon_number "2"; FPKM "6.4009499697"; frac "1.000000"; conf_lo "0.000000"; conf_hi "19.202850"; cov "0.409091";
+chr13	Cufflinks	transcript	8965678	8965704	1000	.	.	gene_id "CUFF.50499"; transcript_id "CUFF.50499.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	8965678	8965704	1000	.	.	gene_id "CUFF.50499"; transcript_id "CUFF.50499.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	8972036	8972065	1000	.	.	gene_id "CUFF.50501"; transcript_id "CUFF.50501.1"; FPKM "112.6567194661"; frac "1.000000"; conf_lo "32.996389"; conf_hi "192.317050"; cov "7.200000";
+chr13	Cufflinks	exon	8972036	8972065	1000	.	.	gene_id "CUFF.50501"; transcript_id "CUFF.50501.1"; exon_number "1"; FPKM "112.6567194661"; frac "1.000000"; conf_lo "32.996389"; conf_hi "192.317050"; cov "7.200000";
+chr13	Cufflinks	transcript	9133705	9133859	1000	.	.	gene_id "CUFF.50503"; transcript_id "CUFF.50503.1"; FPKM "8.1766973806"; frac "1.000000"; conf_lo "0.000000"; conf_hi "17.618334"; cov "0.522581";
+chr13	Cufflinks	exon	9133705	9133859	1000	.	.	gene_id "CUFF.50503"; transcript_id "CUFF.50503.1"; exon_number "1"; FPKM "8.1766973806"; frac "1.000000"; conf_lo "0.000000"; conf_hi "17.618334"; cov "0.522581";
+chr13	Cufflinks	transcript	9134178	9134256	1000	.	.	gene_id "CUFF.50505"; transcript_id "CUFF.50505.1"; FPKM "10.6952581772"; frac "1.000000"; conf_lo "0.000000"; conf_hi "25.820637"; cov "0.683544";
+chr13	Cufflinks	exon	9134178	9134256	1000	.	.	gene_id "CUFF.50505"; transcript_id "CUFF.50505.1"; exon_number "1"; FPKM "10.6952581772"; frac "1.000000"; conf_lo "0.000000"; conf_hi "25.820637"; cov "0.683544";
+chr13	Cufflinks	transcript	9272120	9272153	1000	.	.	gene_id "CUFF.50507"; transcript_id "CUFF.50507.1"; FPKM "24.8212432986"; frac "1.000000"; conf_lo "0.000000"; conf_hi "59.944638"; cov "1.586350";
+chr13	Cufflinks	exon	9272120	9272153	1000	.	.	gene_id "CUFF.50507"; transcript_id "CUFF.50507.1"; exon_number "1"; FPKM "24.8212432986"; frac "1.000000"; conf_lo "0.000000"; conf_hi "59.944638"; cov "1.586350";
+chr13	Cufflinks	transcript	9169898	9172437	1000	+	.	gene_id "CUFF.50509"; transcript_id "CUFF.50509.1"; FPKM "41.4918721248"; frac "1.000000"; conf_lo "16.471332"; conf_hi "66.512412"; cov "2.651786";
+chr13	Cufflinks	exon	9169898	9169928	1000	+	.	gene_id "CUFF.50509"; transcript_id "CUFF.50509.1"; exon_number "1"; FPKM "41.4918721248"; frac "1.000000"; conf_lo "16.471332"; conf_hi "66.512412"; cov "2.651786";
+chr13	Cufflinks	exon	9172357	9172437	1000	+	.	gene_id "CUFF.50509"; transcript_id "CUFF.50509.1"; exon_number "2"; FPKM "41.4918721248"; frac "1.000000"; conf_lo "16.471332"; conf_hi "66.512412"; cov "2.651786";
+chr13	Cufflinks	transcript	9171841	9172220	1000	.	.	gene_id "CUFF.50511"; transcript_id "CUFF.50511.1"; FPKM "108.9509063258"; frac "1.000000"; conf_lo "86.939499"; conf_hi "130.962313"; cov "6.963158";
+chr13	Cufflinks	exon	9171841	9172220	1000	.	.	gene_id "CUFF.50511"; transcript_id "CUFF.50511.1"; exon_number "1"; FPKM "108.9509063258"; frac "1.000000"; conf_lo "86.939499"; conf_hi "130.962313"; cov "6.963158";
+chr13	Cufflinks	transcript	9172647	9173652	1000	.	.	gene_id "CUFF.50513"; transcript_id "CUFF.50513.1"; FPKM "111.9143215254"; frac "1.000000"; conf_lo "98.203357"; conf_hi "125.625287"; cov "7.152553";
+chr13	Cufflinks	exon	9172647	9173652	1000	.	.	gene_id "CUFF.50513"; transcript_id "CUFF.50513.1"; exon_number "1"; FPKM "111.9143215254"; frac "1.000000"; conf_lo "98.203357"; conf_hi "125.625287"; cov "7.152553";
+chr13	Cufflinks	transcript	9277893	9277953	1000	.	.	gene_id "CUFF.50515"; transcript_id "CUFF.50515.1"; FPKM "13.8512359999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.439842"; cov "0.885246";
+chr13	Cufflinks	exon	9277893	9277953	1000	.	.	gene_id "CUFF.50515"; transcript_id "CUFF.50515.1"; exon_number "1"; FPKM "13.8512359999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.439842"; cov "0.885246";
+chr13	Cufflinks	transcript	9278033	9278094	1000	.	.	gene_id "CUFF.50517"; transcript_id "CUFF.50517.1"; FPKM "13.6278289677"; frac "1.000000"; conf_lo "0.000000"; conf_hi "32.900490"; cov "0.870968";
+chr13	Cufflinks	exon	9278033	9278094	1000	.	.	gene_id "CUFF.50517"; transcript_id "CUFF.50517.1"; exon_number "1"; FPKM "13.6278289677"; frac "1.000000"; conf_lo "0.000000"; conf_hi "32.900490"; cov "0.870968";
+chr13	Cufflinks	transcript	9278482	9278551	1000	.	.	gene_id "CUFF.50519"; transcript_id "CUFF.50519.1"; FPKM "18.1055441999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "39.012026"; cov "1.157143";
+chr13	Cufflinks	exon	9278482	9278551	1000	.	.	gene_id "CUFF.50519"; transcript_id "CUFF.50519.1"; exon_number "1"; FPKM "18.1055441999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "39.012026"; cov "1.157143";
+chr13	Cufflinks	transcript	9278167	9278308	1000	.	.	gene_id "CUFF.50521"; transcript_id "CUFF.50521.1"; FPKM "17.8505365351"; frac "1.000000"; conf_lo "3.275634"; conf_hi "32.425439"; cov "1.140845";
+chr13	Cufflinks	exon	9278167	9278308	1000	.	.	gene_id "CUFF.50521"; transcript_id "CUFF.50521.1"; exon_number "1"; FPKM "17.8505365351"; frac "1.000000"; conf_lo "3.275634"; conf_hi "32.425439"; cov "1.140845";
+chr13	Cufflinks	transcript	9346823	9346849	1000	.	.	gene_id "CUFF.50523"; transcript_id "CUFF.50523.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	9346823	9346849	1000	.	.	gene_id "CUFF.50523"; transcript_id "CUFF.50523.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	9373600	9373693	1000	.	.	gene_id "CUFF.50525"; transcript_id "CUFF.50525.1"; FPKM "8.9885680425"; frac "1.000000"; conf_lo "0.000000"; conf_hi "21.700323"; cov "0.574468";
+chr13	Cufflinks	exon	9373600	9373693	1000	.	.	gene_id "CUFF.50525"; transcript_id "CUFF.50525.1"; exon_number "1"; FPKM "8.9885680425"; frac "1.000000"; conf_lo "0.000000"; conf_hi "21.700323"; cov "0.574468";
+chr13	Cufflinks	transcript	9353602	9373527	1000	-	.	gene_id "CUFF.50527"; transcript_id "CUFF.50527.1"; FPKM "16.2485653076"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.010792"; cov "1.038462";
+chr13	Cufflinks	exon	9353602	9353648	1000	-	.	gene_id "CUFF.50527"; transcript_id "CUFF.50527.1"; exon_number "1"; FPKM "16.2485653076"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.010792"; cov "1.038462";
+chr13	Cufflinks	exon	9373497	9373527	1000	-	.	gene_id "CUFF.50527"; transcript_id "CUFF.50527.1"; exon_number "2"; FPKM "16.2485653076"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.010792"; cov "1.038462";
+chr13	Cufflinks	transcript	9386521	9386547	1000	.	.	gene_id "CUFF.50529"; transcript_id "CUFF.50529.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	9386521	9386547	1000	.	.	gene_id "CUFF.50529"; transcript_id "CUFF.50529.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	9391996	9392202	1000	.	.	gene_id "CUFF.50531"; transcript_id "CUFF.50531.1"; FPKM "12.2404495852"; frac "1.000000"; conf_lo "2.244186"; conf_hi "22.236713"; cov "0.782299";
+chr13	Cufflinks	exon	9391996	9392202	1000	.	.	gene_id "CUFF.50531"; transcript_id "CUFF.50531.1"; exon_number "1"; FPKM "12.2404495852"; frac "1.000000"; conf_lo "2.244186"; conf_hi "22.236713"; cov "0.782299";
+chr13	Cufflinks	transcript	9392422	9392467	1000	.	.	gene_id "CUFF.50533"; transcript_id "CUFF.50533.1"; FPKM "9.1839716956"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.551915"; cov "0.586957";
+chr13	Cufflinks	exon	9392422	9392467	1000	.	.	gene_id "CUFF.50533"; transcript_id "CUFF.50533.1"; exon_number "1"; FPKM "9.1839716956"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.551915"; cov "0.586957";
+chr13	Cufflinks	transcript	9392265	9392321	1000	.	.	gene_id "CUFF.50535"; transcript_id "CUFF.50535.1"; FPKM "14.8232525613"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.786497"; cov "0.947368";
+chr13	Cufflinks	exon	9392265	9392321	1000	.	.	gene_id "CUFF.50535"; transcript_id "CUFF.50535.1"; exon_number "1"; FPKM "14.8232525613"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.786497"; cov "0.947368";
+chr13	Cufflinks	transcript	9392577	9392603	1000	.	.	gene_id "CUFF.50537"; transcript_id "CUFF.50537.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	9392577	9392603	1000	.	.	gene_id "CUFF.50537"; transcript_id "CUFF.50537.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	9396631	9396825	1000	.	.	gene_id "CUFF.50539"; transcript_id "CUFF.50539.1"; FPKM "8.6659014974"; frac "1.000000"; conf_lo "0.000000"; conf_hi "17.331803"; cov "0.553846";
+chr13	Cufflinks	exon	9396631	9396825	1000	.	.	gene_id "CUFF.50539"; transcript_id "CUFF.50539.1"; exon_number "1"; FPKM "8.6659014974"; frac "1.000000"; conf_lo "0.000000"; conf_hi "17.331803"; cov "0.553846";
+chr13	Cufflinks	transcript	9397263	9397434	1000	.	.	gene_id "CUFF.50541"; transcript_id "CUFF.50541.1"; FPKM "17.1932493371"; frac "1.000000"; conf_lo "4.196374"; conf_hi "30.190124"; cov "1.098837";
+chr13	Cufflinks	exon	9397263	9397434	1000	.	.	gene_id "CUFF.50541"; transcript_id "CUFF.50541.1"; exon_number "1"; FPKM "17.1932493371"; frac "1.000000"; conf_lo "4.196374"; conf_hi "30.190124"; cov "1.098837";
+chr13	Cufflinks	transcript	9398210	9398294	1000	.	.	gene_id "CUFF.50543"; transcript_id "CUFF.50543.1"; FPKM "9.9402987764"; frac "1.000000"; conf_lo "0.000000"; conf_hi "23.998004"; cov "0.635294";
+chr13	Cufflinks	exon	9398210	9398294	1000	.	.	gene_id "CUFF.50543"; transcript_id "CUFF.50543.1"; exon_number "1"; FPKM "9.9402987764"; frac "1.000000"; conf_lo "0.000000"; conf_hi "23.998004"; cov "0.635294";
+chr13	Cufflinks	transcript	9406013	9406051	1000	.	.	gene_id "CUFF.50545"; transcript_id "CUFF.50545.1"; FPKM "10.8323768717"; frac "1.000000"; conf_lo "0.000000"; conf_hi "32.497131"; cov "0.692308";
+chr13	Cufflinks	exon	9406013	9406051	1000	.	.	gene_id "CUFF.50545"; transcript_id "CUFF.50545.1"; exon_number "1"; FPKM "10.8323768717"; frac "1.000000"; conf_lo "0.000000"; conf_hi "32.497131"; cov "0.692308";
+chr13	Cufflinks	transcript	9413644	9413670	1000	.	.	gene_id "CUFF.50547"; transcript_id "CUFF.50547.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	9413644	9413670	1000	.	.	gene_id "CUFF.50547"; transcript_id "CUFF.50547.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	9414053	9414143	1000	.	.	gene_id "CUFF.50549"; transcript_id "CUFF.50549.1"; FPKM "9.2848944615"; frac "1.000000"; conf_lo "0.000000"; conf_hi "22.415718"; cov "0.593407";
+chr13	Cufflinks	exon	9414053	9414143	1000	.	.	gene_id "CUFF.50549"; transcript_id "CUFF.50549.1"; exon_number "1"; FPKM "9.2848944615"; frac "1.000000"; conf_lo "0.000000"; conf_hi "22.415718"; cov "0.593407";
+chr13	Cufflinks	transcript	9415960	9416015	1000	.	.	gene_id "CUFF.50551"; transcript_id "CUFF.50551.1"; FPKM "15.0879534999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "36.425542"; cov "0.964286";
+chr13	Cufflinks	exon	9415960	9416015	1000	.	.	gene_id "CUFF.50551"; transcript_id "CUFF.50551.1"; exon_number "1"; FPKM "15.0879534999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "36.425542"; cov "0.964286";
+chr13	Cufflinks	transcript	9442325	9442351	1000	.	.	gene_id "CUFF.50553"; transcript_id "CUFF.50553.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	9442325	9442351	1000	.	.	gene_id "CUFF.50553"; transcript_id "CUFF.50553.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	9517895	9517921	1000	.	.	gene_id "CUFF.50555"; transcript_id "CUFF.50555.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	9517895	9517921	1000	.	.	gene_id "CUFF.50555"; transcript_id "CUFF.50555.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	9584154	9584180	1000	.	.	gene_id "CUFF.50558"; transcript_id "CUFF.50558.1"; FPKM "46.9402997776"; frac "1.000000"; conf_lo "0.000000"; conf_hi "101.142289"; cov "3.000000";
+chr13	Cufflinks	exon	9584154	9584180	1000	.	.	gene_id "CUFF.50558"; transcript_id "CUFF.50558.1"; exon_number "1"; FPKM "46.9402997776"; frac "1.000000"; conf_lo "0.000000"; conf_hi "101.142289"; cov "3.000000";
+chr13	Cufflinks	transcript	9583821	9583888	1000	.	.	gene_id "CUFF.50557"; transcript_id "CUFF.50557.1"; FPKM "12.4253734705"; frac "1.000000"; conf_lo "0.000000"; conf_hi "29.997505"; cov "0.794118";
+chr13	Cufflinks	exon	9583821	9583888	1000	.	.	gene_id "CUFF.50557"; transcript_id "CUFF.50557.1"; exon_number "1"; FPKM "12.4253734705"; frac "1.000000"; conf_lo "0.000000"; conf_hi "29.997505"; cov "0.794118";
+chr13	Cufflinks	transcript	9585768	9585937	1000	.	.	gene_id "CUFF.50561"; transcript_id "CUFF.50561.1"; FPKM "9.9402987764"; frac "1.000000"; conf_lo "0.000000"; conf_hi "19.880598"; cov "0.635294";
+chr13	Cufflinks	exon	9585768	9585937	1000	.	.	gene_id "CUFF.50561"; transcript_id "CUFF.50561.1"; exon_number "1"; FPKM "9.9402987764"; frac "1.000000"; conf_lo "0.000000"; conf_hi "19.880598"; cov "0.635294";
+chr13	Cufflinks	transcript	9586173	9593034	1000	-	.	gene_id "CUFF.50563"; transcript_id "CUFF.50563.1"; FPKM "10.3039682439"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.875980"; cov "0.658537";
+chr13	Cufflinks	exon	9586173	9586218	1000	-	.	gene_id "CUFF.50563"; transcript_id "CUFF.50563.1"; exon_number "1"; FPKM "10.3039682439"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.875980"; cov "0.658537";
+chr13	Cufflinks	exon	9592999	9593034	1000	-	.	gene_id "CUFF.50563"; transcript_id "CUFF.50563.1"; exon_number "2"; FPKM "10.3039682439"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.875980"; cov "0.658537";
+chr13	Cufflinks	transcript	9609217	9609243	1000	.	.	gene_id "CUFF.50566"; transcript_id "CUFF.50566.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	9609217	9609243	1000	.	.	gene_id "CUFF.50566"; transcript_id "CUFF.50566.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	9607682	9607717	1000	.	.	gene_id "CUFF.50565"; transcript_id "CUFF.50565.1"; FPKM "23.4701498888"; frac "1.000000"; conf_lo "0.000000"; conf_hi "56.661954"; cov "1.500000";
+chr13	Cufflinks	exon	9607682	9607717	1000	.	.	gene_id "CUFF.50565"; transcript_id "CUFF.50565.1"; exon_number "1"; FPKM "23.4701498888"; frac "1.000000"; conf_lo "0.000000"; conf_hi "56.661954"; cov "1.500000";
+chr13	Cufflinks	transcript	9678669	9678695	1000	.	.	gene_id "CUFF.50569"; transcript_id "CUFF.50569.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	9678669	9678695	1000	.	.	gene_id "CUFF.50569"; transcript_id "CUFF.50569.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	9667710	9667736	1000	.	.	gene_id "CUFF.50571"; transcript_id "CUFF.50571.1"; FPKM "140.7837465978"; frac "1.000000"; conf_lo "46.915532"; conf_hi "234.651961"; cov "8.997626";
+chr13	Cufflinks	exon	9667710	9667736	1000	.	.	gene_id "CUFF.50571"; transcript_id "CUFF.50571.1"; exon_number "1"; FPKM "140.7837465978"; frac "1.000000"; conf_lo "46.915532"; conf_hi "234.651961"; cov "8.997626";
+chr13	Cufflinks	transcript	9667815	9668061	1000	.	.	gene_id "CUFF.50573"; transcript_id "CUFF.50573.1"; FPKM "87.1763440808"; frac "1.000000"; conf_lo "62.754693"; conf_hi "111.597996"; cov "5.571525";
+chr13	Cufflinks	exon	9667815	9668061	1000	.	.	gene_id "CUFF.50573"; transcript_id "CUFF.50573.1"; exon_number "1"; FPKM "87.1763440808"; frac "1.000000"; conf_lo "62.754693"; conf_hi "111.597996"; cov "5.571525";
+chr13	Cufflinks	transcript	9668143	9668170	1000	.	.	gene_id "CUFF.50575"; transcript_id "CUFF.50575.1"; FPKM "82.8583537693"; frac "1.000000"; conf_lo "12.143066"; conf_hi "153.573642"; cov "5.295558";
+chr13	Cufflinks	exon	9668143	9668170	1000	.	.	gene_id "CUFF.50575"; transcript_id "CUFF.50575.1"; exon_number "1"; FPKM "82.8583537693"; frac "1.000000"; conf_lo "12.143066"; conf_hi "153.573642"; cov "5.295558";
+chr13	Cufflinks	transcript	9688931	9688970	1000	.	.	gene_id "CUFF.50577"; transcript_id "CUFF.50577.1"; FPKM "21.1231348999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "50.995759"; cov "1.350000";
+chr13	Cufflinks	exon	9688931	9688970	1000	.	.	gene_id "CUFF.50577"; transcript_id "CUFF.50577.1"; exon_number "1"; FPKM "21.1231348999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "50.995759"; cov "1.350000";
+chr13	Cufflinks	transcript	9684078	9685570	1000	.	.	gene_id "CUFF.50579"; transcript_id "CUFF.50579.1"; FPKM "107.1082431700"; frac "1.000000"; conf_lo "96.097777"; conf_hi "118.118710"; cov "6.845392";
+chr13	Cufflinks	exon	9684078	9685570	1000	.	.	gene_id "CUFF.50579"; transcript_id "CUFF.50579.1"; exon_number "1"; FPKM "107.1082431700"; frac "1.000000"; conf_lo "96.097777"; conf_hi "118.118710"; cov "6.845392";
+chr13	Cufflinks	transcript	9690151	9690234	1000	.	.	gene_id "CUFF.50581"; transcript_id "CUFF.50581.1"; FPKM "10.0586356666"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.283695"; cov "0.642857";
+chr13	Cufflinks	exon	9690151	9690234	1000	.	.	gene_id "CUFF.50581"; transcript_id "CUFF.50581.1"; exon_number "1"; FPKM "10.0586356666"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.283695"; cov "0.642857";
+chr13	Cufflinks	transcript	9694461	9694537	1000	.	.	gene_id "CUFF.50583"; transcript_id "CUFF.50583.1"; FPKM "16.4595856363"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.465478"; cov "1.051948";
+chr13	Cufflinks	exon	9694461	9694537	1000	.	.	gene_id "CUFF.50583"; transcript_id "CUFF.50583.1"; exon_number "1"; FPKM "16.4595856363"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.465478"; cov "1.051948";
+chr13	Cufflinks	transcript	9696900	9696976	1000	.	.	gene_id "CUFF.50585"; transcript_id "CUFF.50585.1"; FPKM "10.9730570909"; frac "1.000000"; conf_lo "0.000000"; conf_hi "26.491303"; cov "0.701299";
+chr13	Cufflinks	exon	9696900	9696976	1000	.	.	gene_id "CUFF.50585"; transcript_id "CUFF.50585.1"; exon_number "1"; FPKM "10.9730570909"; frac "1.000000"; conf_lo "0.000000"; conf_hi "26.491303"; cov "0.701299";
+chr13	Cufflinks	transcript	9725686	9725787	1000	.	.	gene_id "CUFF.50587"; transcript_id "CUFF.50587.1"; FPKM "12.4253734705"; frac "1.000000"; conf_lo "0.000000"; conf_hi "26.772959"; cov "0.794118";
+chr13	Cufflinks	exon	9725686	9725787	1000	.	.	gene_id "CUFF.50587"; transcript_id "CUFF.50587.1"; exon_number "1"; FPKM "12.4253734705"; frac "1.000000"; conf_lo "0.000000"; conf_hi "26.772959"; cov "0.794118";
+chr13	Cufflinks	transcript	9725935	9726047	1000	.	.	gene_id "CUFF.50589"; transcript_id "CUFF.50589.1"; FPKM "11.2158238407"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.166742"; cov "0.716814";
+chr13	Cufflinks	exon	9725935	9726047	1000	.	.	gene_id "CUFF.50589"; transcript_id "CUFF.50589.1"; exon_number "1"; FPKM "11.2158238407"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.166742"; cov "0.716814";
+chr13	Cufflinks	transcript	9739796	9739868	1000	.	.	gene_id "CUFF.50591"; transcript_id "CUFF.50591.1"; FPKM "11.5743204931"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.942882"; cov "0.739726";
+chr13	Cufflinks	exon	9739796	9739868	1000	.	.	gene_id "CUFF.50591"; transcript_id "CUFF.50591.1"; exon_number "1"; FPKM "11.5743204931"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.942882"; cov "0.739726";
+chr13	Cufflinks	transcript	9740164	9740202	1000	.	.	gene_id "CUFF.50593"; transcript_id "CUFF.50593.1"; FPKM "21.6647537435"; frac "1.000000"; conf_lo "0.000000"; conf_hi "52.303342"; cov "1.384615";
+chr13	Cufflinks	exon	9740164	9740202	1000	.	.	gene_id "CUFF.50593"; transcript_id "CUFF.50593.1"; exon_number "1"; FPKM "21.6647537435"; frac "1.000000"; conf_lo "0.000000"; conf_hi "52.303342"; cov "1.384615";
+chr13	Cufflinks	transcript	9740296	9740330	1000	.	.	gene_id "CUFF.50595"; transcript_id "CUFF.50595.1"; FPKM "48.2814511998"; frac "1.000000"; conf_lo "0.000000"; conf_hi "96.562902"; cov "3.085714";
+chr13	Cufflinks	exon	9740296	9740330	1000	.	.	gene_id "CUFF.50595"; transcript_id "CUFF.50595.1"; exon_number "1"; FPKM "48.2814511998"; frac "1.000000"; conf_lo "0.000000"; conf_hi "96.562902"; cov "3.085714";
+chr13	Cufflinks	transcript	9741046	9741127	1000	.	.	gene_id "CUFF.50597"; transcript_id "CUFF.50597.1"; FPKM "10.3039682439"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.875980"; cov "0.658537";
+chr13	Cufflinks	exon	9741046	9741127	1000	.	.	gene_id "CUFF.50597"; transcript_id "CUFF.50597.1"; exon_number "1"; FPKM "10.3039682439"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.875980"; cov "0.658537";
+chr13	Cufflinks	transcript	9741590	9741694	1000	.	.	gene_id "CUFF.50599"; transcript_id "CUFF.50599.1"; FPKM "12.0703627999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "26.008017"; cov "0.771429";
+chr13	Cufflinks	exon	9741590	9741694	1000	.	.	gene_id "CUFF.50599"; transcript_id "CUFF.50599.1"; exon_number "1"; FPKM "12.0703627999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "26.008017"; cov "0.771429";
+chr13	Cufflinks	transcript	9741399	9741517	1000	.	.	gene_id "CUFF.50601"; transcript_id "CUFF.50601.1"; FPKM "24.8507469411"; frac "1.000000"; conf_lo "6.065348"; conf_hi "43.636146"; cov "1.588235";
+chr13	Cufflinks	exon	9741399	9741517	1000	.	.	gene_id "CUFF.50601"; transcript_id "CUFF.50601.1"; exon_number "1"; FPKM "24.8507469411"; frac "1.000000"; conf_lo "6.065348"; conf_hi "43.636146"; cov "1.588235";
+chr13	Cufflinks	transcript	9868979	9869072	1000	.	.	gene_id "CUFF.50603"; transcript_id "CUFF.50603.1"; FPKM "13.4828520638"; frac "1.000000"; conf_lo "0.000000"; conf_hi "29.051509"; cov "0.861702";
+chr13	Cufflinks	exon	9868979	9869072	1000	.	.	gene_id "CUFF.50603"; transcript_id "CUFF.50603.1"; exon_number "1"; FPKM "13.4828520638"; frac "1.000000"; conf_lo "0.000000"; conf_hi "29.051509"; cov "0.861702";
+chr13	Cufflinks	transcript	9872853	9872934	1000	.	.	gene_id "CUFF.50605"; transcript_id "CUFF.50605.1"; FPKM "15.4559523658"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.302949"; cov "0.987805";
+chr13	Cufflinks	exon	9872853	9872934	1000	.	.	gene_id "CUFF.50605"; transcript_id "CUFF.50605.1"; exon_number "1"; FPKM "15.4559523658"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.302949"; cov "0.987805";
+chr13	Cufflinks	transcript	9874731	9874997	1000	.	.	gene_id "CUFF.50607"; transcript_id "CUFF.50607.1"; FPKM "12.6580583670"; frac "1.000000"; conf_lo "3.707459"; conf_hi "21.608657"; cov "0.808989";
+chr13	Cufflinks	exon	9874731	9874997	1000	.	.	gene_id "CUFF.50607"; transcript_id "CUFF.50607.1"; exon_number "1"; FPKM "12.6580583670"; frac "1.000000"; conf_lo "3.707459"; conf_hi "21.608657"; cov "0.808989";
+chr13	Cufflinks	transcript	9875128	9875201	1000	.	.	gene_id "CUFF.50609"; transcript_id "CUFF.50609.1"; FPKM "22.8358215134"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.671643"; cov "1.459459";
+chr13	Cufflinks	exon	9875128	9875201	1000	.	.	gene_id "CUFF.50609"; transcript_id "CUFF.50609.1"; exon_number "1"; FPKM "22.8358215134"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.671643"; cov "1.459459";
+chr13	Cufflinks	transcript	9875323	9875349	1000	.	.	gene_id "CUFF.50611"; transcript_id "CUFF.50611.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	9875323	9875349	1000	.	.	gene_id "CUFF.50611"; transcript_id "CUFF.50611.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	9875425	9875480	1000	.	.	gene_id "CUFF.50613"; transcript_id "CUFF.50613.1"; FPKM "15.0879534999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "36.425542"; cov "0.964286";
+chr13	Cufflinks	exon	9875425	9875480	1000	.	.	gene_id "CUFF.50613"; transcript_id "CUFF.50613.1"; exon_number "1"; FPKM "15.0879534999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "36.425542"; cov "0.964286";
+chr13	Cufflinks	transcript	9876121	9876172	1000	.	.	gene_id "CUFF.50615"; transcript_id "CUFF.50615.1"; FPKM "16.2485653076"; frac "1.000000"; conf_lo "0.000000"; conf_hi "39.227507"; cov "1.038462";
+chr13	Cufflinks	exon	9876121	9876172	1000	.	.	gene_id "CUFF.50615"; transcript_id "CUFF.50615.1"; exon_number "1"; FPKM "16.2485653076"; frac "1.000000"; conf_lo "0.000000"; conf_hi "39.227507"; cov "1.038462";
+chr13	Cufflinks	transcript	9969155	9969237	1000	.	.	gene_id "CUFF.50617"; transcript_id "CUFF.50617.1"; FPKM "8.6756763125"; frac "1.000000"; conf_lo "0.000000"; conf_hi "21.966038"; cov "0.554471";
+chr13	Cufflinks	exon	9969155	9969237	1000	.	.	gene_id "CUFF.50617"; transcript_id "CUFF.50617.1"; exon_number "1"; FPKM "8.6756763125"; frac "1.000000"; conf_lo "0.000000"; conf_hi "21.966038"; cov "0.554471";
+chr13	Cufflinks	transcript	9986765	9986791	1000	.	.	gene_id "CUFF.50619"; transcript_id "CUFF.50619.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000";
+chr13	Cufflinks	exon	9986765	9986791	1000	.	.	gene_id "CUFF.50619"; transcript_id "CUFF.50619.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000";
+chr13	Cufflinks	transcript	9987242	9987567	1000	.	.	gene_id "CUFF.50621"; transcript_id "CUFF.50621.1"; FPKM "10.3671827730"; frac "1.000000"; conf_lo "3.036478"; conf_hi "17.697888"; cov "0.662577";
+chr13	Cufflinks	exon	9987242	9987567	1000	.	.	gene_id "CUFF.50621"; transcript_id "CUFF.50621.1"; exon_number "1"; FPKM "10.3671827730"; frac "1.000000"; conf_lo "3.036478"; conf_hi "17.697888"; cov "0.662577";
+chr13	Cufflinks	transcript	10010160	10010265	1000	.	.	gene_id "CUFF.50623"; transcript_id "CUFF.50623.1"; FPKM "11.9564914528"; frac "1.000000"; conf_lo "0.000000"; conf_hi "25.762659"; cov "0.764151";
+chr13	Cufflinks	exon	10010160	10010265	1000	.	.	gene_id "CUFF.50623"; transcript_id "CUFF.50623.1"; exon_number "1"; FPKM "11.9564914528"; frac "1.000000"; conf_lo "0.000000"; conf_hi "25.762659"; cov "0.764151";
+chr13	Cufflinks	transcript	10010497	10010523	1000	.	.	gene_id "CUFF.50625"; transcript_id "CUFF.50625.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	10010497	10010523	1000	.	.	gene_id "CUFF.50625"; transcript_id "CUFF.50625.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	10012021	10012167	1000	.	.	gene_id "CUFF.50627"; transcript_id "CUFF.50627.1"; FPKM "11.4955836190"; frac "1.000000"; conf_lo "0.000000"; conf_hi "22.991167"; cov "0.734694";
+chr13	Cufflinks	exon	10012021	10012167	1000	.	.	gene_id "CUFF.50627"; transcript_id "CUFF.50627.1"; exon_number "1"; FPKM "11.4955836190"; frac "1.000000"; conf_lo "0.000000"; conf_hi "22.991167"; cov "0.734694";
+chr13	Cufflinks	transcript	10019657	10019683	1000	.	.	gene_id "CUFF.50629"; transcript_id "CUFF.50629.1"; FPKM "46.9402997776"; frac "1.000000"; conf_lo "0.000000"; conf_hi "101.142289"; cov "3.000000";
+chr13	Cufflinks	exon	10019657	10019683	1000	.	.	gene_id "CUFF.50629"; transcript_id "CUFF.50629.1"; exon_number "1"; FPKM "46.9402997776"; frac "1.000000"; conf_lo "0.000000"; conf_hi "101.142289"; cov "3.000000";
+chr13	Cufflinks	transcript	10024965	10025028	1000	.	.	gene_id "CUFF.50631"; transcript_id "CUFF.50631.1"; FPKM "13.2019593124"; frac "1.000000"; conf_lo "0.000000"; conf_hi "31.872349"; cov "0.843750";
+chr13	Cufflinks	exon	10024965	10025028	1000	.	.	gene_id "CUFF.50631"; transcript_id "CUFF.50631.1"; exon_number "1"; FPKM "13.2019593124"; frac "1.000000"; conf_lo "0.000000"; conf_hi "31.872349"; cov "0.843750";
+chr13	Cufflinks	transcript	10082104	10082206	1000	.	.	gene_id "CUFF.50633"; transcript_id "CUFF.50633.1"; FPKM "8.2031591844"; frac "1.000000"; conf_lo "0.000000"; conf_hi "19.804178"; cov "0.524272";
+chr13	Cufflinks	exon	10082104	10082206	1000	.	.	gene_id "CUFF.50633"; transcript_id "CUFF.50633.1"; exon_number "1"; FPKM "8.2031591844"; frac "1.000000"; conf_lo "0.000000"; conf_hi "19.804178"; cov "0.524272";
+chr13	Cufflinks	transcript	10086419	10086446	1000	.	.	gene_id "CUFF.50635"; transcript_id "CUFF.50635.1"; FPKM "60.3518139997"; frac "1.000000"; conf_lo "0.000000"; conf_hi "120.703628"; cov "3.857143";
+chr13	Cufflinks	exon	10086419	10086446	1000	.	.	gene_id "CUFF.50635"; transcript_id "CUFF.50635.1"; exon_number "1"; FPKM "60.3518139997"; frac "1.000000"; conf_lo "0.000000"; conf_hi "120.703628"; cov "3.857143";
+chr13	Cufflinks	transcript	10086886	10086930	1000	.	.	gene_id "CUFF.50637"; transcript_id "CUFF.50637.1"; FPKM "18.7761199110"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.329563"; cov "1.200000";
+chr13	Cufflinks	exon	10086886	10086930	1000	.	.	gene_id "CUFF.50637"; transcript_id "CUFF.50637.1"; exon_number "1"; FPKM "18.7761199110"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.329563"; cov "1.200000";
+chr13	Cufflinks	transcript	10096818	10096844	1000	.	.	gene_id "CUFF.50639"; transcript_id "CUFF.50639.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	10096818	10096844	1000	.	.	gene_id "CUFF.50639"; transcript_id "CUFF.50639.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	10111271	10111358	1000	.	.	gene_id "CUFF.50641"; transcript_id "CUFF.50641.1"; FPKM "9.6014249545"; frac "1.000000"; conf_lo "0.000000"; conf_hi "23.179890"; cov "0.613636";
+chr13	Cufflinks	exon	10111271	10111358	1000	.	.	gene_id "CUFF.50641"; transcript_id "CUFF.50641.1"; exon_number "1"; FPKM "9.6014249545"; frac "1.000000"; conf_lo "0.000000"; conf_hi "23.179890"; cov "0.613636";
+chr13	Cufflinks	transcript	10182192	10182228	1000	.	.	gene_id "CUFF.50643"; transcript_id "CUFF.50643.1"; FPKM "34.2537322701"; frac "1.000000"; conf_lo "0.000000"; conf_hi "73.806535"; cov "2.189189";
+chr13	Cufflinks	exon	10182192	10182228	1000	.	.	gene_id "CUFF.50643"; transcript_id "CUFF.50643.1"; exon_number "1"; FPKM "34.2537322701"; frac "1.000000"; conf_lo "0.000000"; conf_hi "73.806535"; cov "2.189189";
+chr13	Cufflinks	transcript	10189009	10189035	1000	.	.	gene_id "CUFF.50645"; transcript_id "CUFF.50645.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	10189009	10189035	1000	.	.	gene_id "CUFF.50645"; transcript_id "CUFF.50645.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	10197772	10197798	1000	.	.	gene_id "CUFF.50647"; transcript_id "CUFF.50647.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	10197772	10197798	1000	.	.	gene_id "CUFF.50647"; transcript_id "CUFF.50647.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	10200086	10200124	1000	.	.	gene_id "CUFF.50649"; transcript_id "CUFF.50649.1"; FPKM "21.6647537435"; frac "1.000000"; conf_lo "0.000000"; conf_hi "52.303342"; cov "1.384615";
+chr13	Cufflinks	exon	10200086	10200124	1000	.	.	gene_id "CUFF.50649"; transcript_id "CUFF.50649.1"; exon_number "1"; FPKM "21.6647537435"; frac "1.000000"; conf_lo "0.000000"; conf_hi "52.303342"; cov "1.384615";
+chr13	Cufflinks	transcript	10213412	10213536	1000	.	.	gene_id "CUFF.50651"; transcript_id "CUFF.50651.1"; FPKM "13.5188063359"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.037613"; cov "0.864000";
+chr13	Cufflinks	exon	10213412	10213536	1000	.	.	gene_id "CUFF.50651"; transcript_id "CUFF.50651.1"; exon_number "1"; FPKM "13.5188063359"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.037613"; cov "0.864000";
+chr13	Cufflinks	transcript	10223893	10223941	1000	.	.	gene_id "CUFF.50653"; transcript_id "CUFF.50653.1"; FPKM "17.2433754285"; frac "1.000000"; conf_lo "0.000000"; conf_hi "41.629191"; cov "1.102041";
+chr13	Cufflinks	exon	10223893	10223941	1000	.	.	gene_id "CUFF.50653"; transcript_id "CUFF.50653.1"; exon_number "1"; FPKM "17.2433754285"; frac "1.000000"; conf_lo "0.000000"; conf_hi "41.629191"; cov "1.102041";
+chr13	Cufflinks	transcript	10289392	10289437	1000	.	.	gene_id "CUFF.50655"; transcript_id "CUFF.50655.1"; FPKM "18.3679433912"; frac "1.000000"; conf_lo "0.000000"; conf_hi "44.344138"; cov "1.173913";
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
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+chr13	11732540	11732644	exon	0	-
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+chr13	11782558	11782634	exon	0	-
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+chr13	11793045	11793135	exon	0	-
+chr13	11795763	11795842	exon	0	-
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+chr13	11798848	11798989	exon	0	-
+chr13	11800048	11800139	exon	0	-
+chr13	11800288	11800509	exon	0	-
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+chr13	11810636	11810772	exon	0	-
+chr13	11814017	11814121	exon	0	-
+chr13	11814997	11815130	exon	0	-
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+chr13	11822609	11822753	exon	0	-
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+chr13	11827737	11827938	exon	0	-
+chr13	11829988	11830787	exon	0	-
+chr13	11834120	11834347	exon	0	-
+chr13	11837444	11837531	exon	0	-
+chr13	11837863	11838026	exon	0	-
+chr13	11839754	11839915	exon	0	-
+chr13	11841702	11841817	exon	0	-
+chr13	11842955	11843308	exon	0	-
+chr13	11844462	11844671	exon	0	-
+chr13	11851937	11852112	exon	0	-
+chr13	11853493	11853702	exon	0	-
+chr13	11862118	11862266	exon	0	-
+chr13	11864686	11864846	exon	0	-
+chr13	11871451	11871535	exon	0	-
+chr13	11877304	11877408	exon	0	-
+chr13	11882525	11882630	exon	0	-
+chr13	11884935	11885152	exon	0	-
+chr13	11886808	11887001	exon	0	-
+chr13	11891948	11892190	exon	0	-
+chr13	11893404	11893538	exon	0	-
+chr13	11894073	11894192	exon	0	-
+chr13	11903149	11903245	exon	0	-
+chr13	11916540	11916676	exon	0	-
+chr13	11919800	11919984	exon	0	-
+chr13	11921823	11921945	exon	0	-
+chr13	11926190	11926355	exon	0	-
+chr13	11943324	11943481	exon	0	-
+chr13	11945382	11945457	exon	0	-
+chr13	11960383	11960480	exon	0	-
+chr13	11961383	11961483	exon	0	-
+chr13	11971741	11971854	exon	0	-
+chr13	11975311	11975390	exon	0	-
+chr13	11977730	11977805	exon	0	-
+chr13	11983100	11983115	exon	0	-
+chr13	11995484	11995505	exon	0	-
+chr13	12010577	12010682	exon	0	-
+chr13	12038149	12038269	exon	0	-
+chr13	12198665	12199212	exon	0	-
+chr13	12279085	12350267	transcript	0	-
+chr13	12279085	12279358	exon	0	-
+chr13	12280307	12280420	exon	0	-
+chr13	12281613	12281806	exon	0	-
+chr13	12282470	12282671	exon	0	-
+chr13	12285880	12286077	exon	0	-
+chr13	12287504	12287660	exon	0	-
+chr13	12290179	12290255	exon	0	-
+chr13	12291312	12291411	exon	0	-
+chr13	12292463	12292545	exon	0	-
+chr13	12297009	12297130	exon	0	-
+chr13	12297556	12297624	exon	0	-
+chr13	12304654	12304755	exon	0	-
+chr13	12304937	12305045	exon	0	-
+chr13	12307679	12307832	exon	0	-
+chr13	12309076	12309166	exon	0	-
+chr13	12313688	12313829	exon	0	-
+chr13	12314421	12314538	exon	0	-
+chr13	12317728	12317908	exon	0	-
+chr13	12319950	12320136	exon	0	-
+chr13	12323211	12323352	exon	0	-
+chr13	12325168	12325281	exon	0	-
+chr13	12327723	12327803	exon	0	-
+chr13	12330247	12330315	exon	0	-
+chr13	12331915	12331977	exon	0	-
+chr13	12333831	12333932	exon	0	-
+chr13	12336201	12336296	exon	0	-
+chr13	12336821	12336884	exon	0	-
+chr13	12339585	12339692	exon	0	-
+chr13	12340159	12340252	exon	0	-
+chr13	12342111	12342181	exon	0	-
+chr13	12342868	12342958	exon	0	-
+chr13	12346030	12346245	exon	0	-
+chr13	12350128	12350267	exon	0	-
+chr13	12361693	12432999	transcript	0	-
+chr13	12361693	12361919	exon	0	-
+chr13	12363044	12363203	exon	0	-
+chr13	12364965	12365031	exon	0	-
+chr13	12367344	12367491	exon	0	-
+chr13	12368629	12368809	exon	0	-
+chr13	12369665	12369800	exon	0	-
+chr13	12371060	12371243	exon	0	-
+chr13	12372695	12372836	exon	0	-
+chr13	12374781	12374890	exon	0	-
+chr13	12380773	12380924	exon	0	-
+chr13	12382940	12383088	exon	0	-
+chr13	12383926	12384157	exon	0	-
+chr13	12386576	12386669	exon	0	-
+chr13	12388741	12388827	exon	0	-
+chr13	12393201	12393283	exon	0	-
+chr13	12396580	12396659	exon	0	-
+chr13	12398540	12398628	exon	0	-
+chr13	12401166	12401253	exon	0	-
+chr13	12401861	12401981	exon	0	-
+chr13	12403113	12403228	exon	0	-
+chr13	12432641	12432999	exon	0	-
+chr13	12487641	12531160	transcript	0	+
+chr13	12487641	12487737	exon	0	+
+chr13	12488006	12488180	exon	0	+
+chr13	12488688	12488905	exon	0	+
+chr13	12491169	12491311	exon	0	+
+chr13	12493316	12493418	exon	0	+
+chr13	12493716	12493857	exon	0	+
+chr13	12494980	12495192	exon	0	+
+chr13	12495411	12495545	exon	0	+
+chr13	12497154	12497257	exon	0	+
+chr13	12498289	12498400	exon	0	+
+chr13	12498791	12498909	exon	0	+
+chr13	12499783	12499891	exon	0	+
+chr13	12500920	12501016	exon	0	+
+chr13	12501475	12501564	exon	0	+
+chr13	12502662	12502874	exon	0	+
+chr13	12503486	12503608	exon	0	+
+chr13	12504311	12504503	exon	0	+
+chr13	12505491	12505675	exon	0	+
+chr13	12505778	12505915	exon	0	+
+chr13	12506639	12506832	exon	0	+
+chr13	12507683	12507853	exon	0	+
+chr13	12508217	12508376	exon	0	+
+chr13	12509726	12509969	exon	0	+
+chr13	12510364	12510496	exon	0	+
+chr13	12513308	12513412	exon	0	+
+chr13	12513544	12513688	exon	0	+
+chr13	12514307	12514426	exon	0	+
+chr13	12514507	12514629	exon	0	+
+chr13	12515900	12516029	exon	0	+
+chr13	12516886	12517117	exon	0	+
+chr13	12518420	12518547	exon	0	+
+chr13	12519028	12519189	exon	0	+
+chr13	12522033	12522080	exon	0	+
+chr13	12522407	12522531	exon	0	+
+chr13	12523177	12523318	exon	0	+
+chr13	12523946	12524239	exon	0	+
+chr13	12524895	12525046	exon	0	+
+chr13	12525878	12526037	exon	0	+
+chr13	12526183	12526318	exon	0	+
+chr13	12526453	12526558	exon	0	+
+chr13	12526640	12526809	exon	0	+
+chr13	12527313	12527468	exon	0	+
+chr13	12527936	12528095	exon	0	+
+chr13	12530100	12530209	exon	0	+
+chr13	12530855	12531160	exon	0	+
+chr13	12531685	12553757	transcript	0	-
+chr13	12531685	12533261	exon	0	-
+chr13	12539413	12539579	exon	0	-
+chr13	12540685	12540774	exon	0	-
+chr13	12543667	12543694	exon	0	-
+chr13	12544988	12545045	exon	0	-
+chr13	12545551	12545671	exon	0	-
+chr13	12547001	12547212	exon	0	-
+chr13	12548610	12548699	exon	0	-
+chr13	12551440	12551583	exon	0	-
+chr13	12553693	12553757	exon	0	-
+chr13	12569174	12612715	transcript	0	-
+chr13	12569174	12570841	exon	0	-
+chr13	12575866	12575912	exon	0	-
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/gops_subtract_in2.gff	Tue Apr 01 10:52:51 2014 -0400
@@ -0,0 +1,500 @@
+chr13	Cufflinks	transcript	3633324	3651020	1000	+	.	gene_id "Asb13"; transcript_id "Asb13_dup1"; FPKM "12.1778141008"; frac "1.000000"; conf_lo "9.224260"; conf_hi "15.131368"; cov "0.778296";
+chr13	Cufflinks	exon	3633324	3633421	1000	+	.	gene_id "Asb13"; transcript_id "Asb13_dup1"; exon_number "1"; FPKM "12.1778141008"; frac "1.000000"; conf_lo "9.224260"; conf_hi "15.131368"; cov "0.778296";
+chr13	Cufflinks	exon	3641311	3641498	1000	+	.	gene_id "Asb13"; transcript_id "Asb13_dup1"; exon_number "2"; FPKM "12.1778141008"; frac "1.000000"; conf_lo "9.224260"; conf_hi "15.131368"; cov "0.778296";
+chr13	Cufflinks	exon	3642721	3642871	1000	+	.	gene_id "Asb13"; transcript_id "Asb13_dup1"; exon_number "3"; FPKM "12.1778141008"; frac "1.000000"; conf_lo "9.224260"; conf_hi "15.131368"; cov "0.778296";
+chr13	Cufflinks	exon	3644162	3644296	1000	+	.	gene_id "Asb13"; transcript_id "Asb13_dup1"; exon_number "4"; FPKM "12.1778141008"; frac "1.000000"; conf_lo "9.224260"; conf_hi "15.131368"; cov "0.778296";
+chr13	Cufflinks	exon	3648565	3648756	1000	+	.	gene_id "Asb13"; transcript_id "Asb13_dup1"; exon_number "5"; FPKM "12.1778141008"; frac "1.000000"; conf_lo "9.224260"; conf_hi "15.131368"; cov "0.778296";
+chr13	Cufflinks	exon	3649426	3651020	1000	+	.	gene_id "Asb13"; transcript_id "Asb13_dup1"; exon_number "6"; FPKM "12.1778141008"; frac "1.000000"; conf_lo "9.224260"; conf_hi "15.131368"; cov "0.778296";
+chr13	Cufflinks	transcript	3802139	3803564	1000	-	.	gene_id "Calml3"; transcript_id "Calml3"; FPKM "4.8864843670"; frac "1.000000"; conf_lo "2.480113"; conf_hi "7.292856"; cov "0.312300";
+chr13	Cufflinks	exon	3802139	3803564	1000	-	.	gene_id "Calml3"; transcript_id "Calml3"; exon_number "1"; FPKM "4.8864843670"; frac "1.000000"; conf_lo "2.480113"; conf_hi "7.292856"; cov "0.312300";
+chr13	Cufflinks	transcript	3881809	3892824	1000	-	.	gene_id "Net1"; transcript_id "Net1_dup1"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806";
+chr13	Cufflinks	exon	3881809	3883719	1000	-	.	gene_id "Net1"; transcript_id "Net1_dup1"; exon_number "1"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806";
+chr13	Cufflinks	exon	3884049	3884235	1000	-	.	gene_id "Net1"; transcript_id "Net1_dup1"; exon_number "2"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806";
+chr13	Cufflinks	exon	3885294	3885464	1000	-	.	gene_id "Net1"; transcript_id "Net1_dup1"; exon_number "3"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806";
+chr13	Cufflinks	exon	3885784	3886041	1000	-	.	gene_id "Net1"; transcript_id "Net1_dup1"; exon_number "4"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806";
+chr13	Cufflinks	exon	3886617	3886693	1000	-	.	gene_id "Net1"; transcript_id "Net1_dup1"; exon_number "5"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806";
+chr13	Cufflinks	exon	3886817	3886913	1000	-	.	gene_id "Net1"; transcript_id "Net1_dup1"; exon_number "6"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806";
+chr13	Cufflinks	exon	3887224	3887286	1000	-	.	gene_id "Net1"; transcript_id "Net1_dup1"; exon_number "7"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806";
+chr13	Cufflinks	exon	3887601	3887768	1000	-	.	gene_id "Net1"; transcript_id "Net1_dup1"; exon_number "8"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806";
+chr13	Cufflinks	exon	3888117	3888224	1000	-	.	gene_id "Net1"; transcript_id "Net1_dup1"; exon_number "9"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806";
+chr13	Cufflinks	exon	3892539	3892824	1000	-	.	gene_id "Net1"; transcript_id "Net1_dup1"; exon_number "10"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806";
+chr13	Cufflinks	transcript	4131873	4149877	1000	-	.	gene_id "Akr1c18"; transcript_id "Akr1c18"; FPKM "1.0813891587"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov "0.069113";
+chr13	Cufflinks	exon	4131873	4132082	1000	-	.	gene_id "Akr1c18"; transcript_id "Akr1c18"; exon_number "1"; FPKM "1.0813891587"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov "0.069113";
+chr13	Cufflinks	exon	4134449	4134531	1000	-	.	gene_id "Akr1c18"; transcript_id "Akr1c18"; exon_number "2"; FPKM "1.0813891587"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov "0.069113";
+chr13	Cufflinks	exon	4135848	4136013	1000	-	.	gene_id "Akr1c18"; transcript_id "Akr1c18"; exon_number "3"; FPKM "1.0813891587"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov "0.069113";
+chr13	Cufflinks	exon	4136380	4136489	1000	-	.	gene_id "Akr1c18"; transcript_id "Akr1c18"; exon_number "4"; FPKM "1.0813891587"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov "0.069113";
+chr13	Cufflinks	exon	4141373	4141495	1000	-	.	gene_id "Akr1c18"; transcript_id "Akr1c18"; exon_number "5"; FPKM "1.0813891587"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov "0.069113";
+chr13	Cufflinks	exon	4142464	4142541	1000	-	.	gene_id "Akr1c18"; transcript_id "Akr1c18"; exon_number "6"; FPKM "1.0813891587"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov "0.069113";
+chr13	Cufflinks	exon	4143536	4143652	1000	-	.	gene_id "Akr1c18"; transcript_id "Akr1c18"; exon_number "7"; FPKM "1.0813891587"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov "0.069113";
+chr13	Cufflinks	exon	4144452	4144619	1000	-	.	gene_id "Akr1c18"; transcript_id "Akr1c18"; exon_number "8"; FPKM "1.0813891587"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov "0.069113";
+chr13	Cufflinks	exon	4149761	4149877	1000	-	.	gene_id "Akr1c18"; transcript_id "Akr1c18"; exon_number "9"; FPKM "1.0813891587"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov "0.069113";
+chr13	Cufflinks	transcript	4232986	4247605	1000	+	.	gene_id "Akr1c19"; transcript_id "Akr1c19"; FPKM "2.3810296989"; frac "1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov "0.152174";
+chr13	Cufflinks	exon	4232986	4233100	1000	+	.	gene_id "Akr1c19"; transcript_id "Akr1c19"; exon_number "1"; FPKM "2.3810296989"; frac "1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov "0.152174";
+chr13	Cufflinks	exon	4235335	4235502	1000	+	.	gene_id "Akr1c19"; transcript_id "Akr1c19"; exon_number "2"; FPKM "2.3810296989"; frac "1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov "0.152174";
+chr13	Cufflinks	exon	4236282	4236398	1000	+	.	gene_id "Akr1c19"; transcript_id "Akr1c19"; exon_number "3"; FPKM "2.3810296989"; frac "1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov "0.152174";
+chr13	Cufflinks	exon	4237640	4237717	1000	+	.	gene_id "Akr1c19"; transcript_id "Akr1c19"; exon_number "4"; FPKM "2.3810296989"; frac "1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov "0.152174";
+chr13	Cufflinks	exon	4238214	4238336	1000	+	.	gene_id "Akr1c19"; transcript_id "Akr1c19"; exon_number "5"; FPKM "2.3810296989"; frac "1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov "0.152174";
+chr13	Cufflinks	exon	4241798	4241907	1000	+	.	gene_id "Akr1c19"; transcript_id "Akr1c19"; exon_number "6"; FPKM "2.3810296989"; frac "1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov "0.152174";
+chr13	Cufflinks	exon	4242173	4242338	1000	+	.	gene_id "Akr1c19"; transcript_id "Akr1c19"; exon_number "7"; FPKM "2.3810296989"; frac "1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov "0.152174";
+chr13	Cufflinks	exon	4246049	4246131	1000	+	.	gene_id "Akr1c19"; transcript_id "Akr1c19"; exon_number "8"; FPKM "2.3810296989"; frac "1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov "0.152174";
+chr13	Cufflinks	exon	4247324	4247605	1000	+	.	gene_id "Akr1c19"; transcript_id "Akr1c19"; exon_number "9"; FPKM "2.3810296989"; frac "1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov "0.152174";
+chr13	Cufflinks	transcript	4247981	4249023	1000	+	.	gene_id "Marcksl1-ps4"; transcript_id "Marcksl1-ps4"; FPKM "25.7982124751"; frac "1.000000"; conf_lo "19.333089"; conf_hi "32.263336"; cov "1.648789";
+chr13	Cufflinks	exon	4247981	4249023	1000	+	.	gene_id "Marcksl1-ps4"; transcript_id "Marcksl1-ps4"; exon_number "1"; FPKM "25.7982124751"; frac "1.000000"; conf_lo "19.333089"; conf_hi "32.263336"; cov "1.648789";
+chr13	Cufflinks	transcript	4591736	4608410	1000	-	.	gene_id "Akr1e1"; transcript_id "Akr1e1"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044";
+chr13	Cufflinks	exon	4591736	4592544	1000	-	.	gene_id "Akr1e1"; transcript_id "Akr1e1"; exon_number "1"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044";
+chr13	Cufflinks	exon	4592808	4592890	1000	-	.	gene_id "Akr1e1"; transcript_id "Akr1e1"; exon_number "2"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044";
+chr13	Cufflinks	exon	4594317	4594400	1000	-	.	gene_id "Akr1e1"; transcript_id "Akr1e1"; exon_number "3"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044";
+chr13	Cufflinks	exon	4594906	4594978	1000	-	.	gene_id "Akr1e1"; transcript_id "Akr1e1"; exon_number "4"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044";
+chr13	Cufflinks	exon	4596731	4596828	1000	-	.	gene_id "Akr1e1"; transcript_id "Akr1e1"; exon_number "5"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044";
+chr13	Cufflinks	exon	4598016	4598138	1000	-	.	gene_id "Akr1e1"; transcript_id "Akr1e1"; exon_number "6"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044";
+chr13	Cufflinks	exon	4600464	4600541	1000	-	.	gene_id "Akr1e1"; transcript_id "Akr1e1"; exon_number "7"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044";
+chr13	Cufflinks	exon	4601927	4602043	1000	-	.	gene_id "Akr1e1"; transcript_id "Akr1e1"; exon_number "8"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044";
+chr13	Cufflinks	exon	4606637	4606804	1000	-	.	gene_id "Akr1e1"; transcript_id "Akr1e1"; exon_number "9"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044";
+chr13	Cufflinks	exon	4608331	4608410	1000	-	.	gene_id "Akr1e1"; transcript_id "Akr1e1"; exon_number "10"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044";
+chr13	Cufflinks	transcript	5860735	5869639	1000	+	.	gene_id "Klf6"; transcript_id "Klf6"; FPKM "24.6944637170"; frac "1.000000"; conf_lo "21.548728"; conf_hi "27.840199"; cov "1.578247";
+chr13	Cufflinks	exon	5860735	5861088	1000	+	.	gene_id "Klf6"; transcript_id "Klf6"; exon_number "1"; FPKM "24.6944637170"; frac "1.000000"; conf_lo "21.548728"; conf_hi "27.840199"; cov "1.578247";
+chr13	Cufflinks	exon	5864014	5864590	1000	+	.	gene_id "Klf6"; transcript_id "Klf6"; exon_number "2"; FPKM "24.6944637170"; frac "1.000000"; conf_lo "21.548728"; conf_hi "27.840199"; cov "1.578247";
+chr13	Cufflinks	exon	5865885	5866008	1000	+	.	gene_id "Klf6"; transcript_id "Klf6"; exon_number "3"; FPKM "24.6944637170"; frac "1.000000"; conf_lo "21.548728"; conf_hi "27.840199"; cov "1.578247";
+chr13	Cufflinks	exon	5866478	5869639	1000	+	.	gene_id "Klf6"; transcript_id "Klf6"; exon_number "4"; FPKM "24.6944637170"; frac "1.000000"; conf_lo "21.548728"; conf_hi "27.840199"; cov "1.578247";
+chr13	Cufflinks	transcript	3537321	3565507	1000	+	.	gene_id "Gdi2"; transcript_id "Gdi2"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918";
+chr13	Cufflinks	exon	3537321	3537589	1000	+	.	gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "1"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918";
+chr13	Cufflinks	exon	3548109	3548216	1000	+	.	gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "2"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918";
+chr13	Cufflinks	exon	3550235	3550334	1000	+	.	gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "3"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918";
+chr13	Cufflinks	exon	3553658	3553792	1000	+	.	gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "4"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918";
+chr13	Cufflinks	exon	3555560	3555758	1000	+	.	gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "5"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918";
+chr13	Cufflinks	exon	3556172	3556303	1000	+	.	gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "6"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918";
+chr13	Cufflinks	exon	3559238	3559337	1000	+	.	gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "7"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918";
+chr13	Cufflinks	exon	3561112	3561283	1000	+	.	gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "8"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918";
+chr13	Cufflinks	exon	3563786	3563930	1000	+	.	gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "9"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918";
+chr13	Cufflinks	exon	3564105	3564159	1000	+	.	gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "10"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918";
+chr13	Cufflinks	exon	3564242	3565507	1000	+	.	gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "11"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918";
+chr13	Cufflinks	transcript	3565281	3610354	1000	-	.	gene_id "BC016423"; transcript_id "BC016423"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445";
+chr13	Cufflinks	exon	3565281	3565913	1000	-	.	gene_id "BC016423"; transcript_id "BC016423"; exon_number "1"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445";
+chr13	Cufflinks	exon	3566164	3566278	1000	-	.	gene_id "BC016423"; transcript_id "BC016423"; exon_number "2"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445";
+chr13	Cufflinks	exon	3566682	3566863	1000	-	.	gene_id "BC016423"; transcript_id "BC016423"; exon_number "3"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445";
+chr13	Cufflinks	exon	3567998	3568103	1000	-	.	gene_id "BC016423"; transcript_id "BC016423"; exon_number "4"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445";
+chr13	Cufflinks	exon	3568734	3568887	1000	-	.	gene_id "BC016423"; transcript_id "BC016423"; exon_number "5"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445";
+chr13	Cufflinks	exon	3569558	3569683	1000	-	.	gene_id "BC016423"; transcript_id "BC016423"; exon_number "6"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445";
+chr13	Cufflinks	exon	3572733	3576446	1000	-	.	gene_id "BC016423"; transcript_id "BC016423"; exon_number "7"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445";
+chr13	Cufflinks	exon	3580998	3581439	1000	-	.	gene_id "BC016423"; transcript_id "BC016423"; exon_number "8"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445";
+chr13	Cufflinks	exon	3583746	3584619	1000	-	.	gene_id "BC016423"; transcript_id "BC016423"; exon_number "9"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445";
+chr13	Cufflinks	exon	3587544	3587780	1000	-	.	gene_id "BC016423"; transcript_id "BC016423"; exon_number "10"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445";
+chr13	Cufflinks	exon	3589187	3589894	1000	-	.	gene_id "BC016423"; transcript_id "BC016423"; exon_number "11"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445";
+chr13	Cufflinks	exon	3593377	3593439	1000	-	.	gene_id "BC016423"; transcript_id "BC016423"; exon_number "12"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445";
+chr13	Cufflinks	exon	3593539	3593611	1000	-	.	gene_id "BC016423"; transcript_id "BC016423"; exon_number "13"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445";
+chr13	Cufflinks	exon	3594743	3594846	1000	-	.	gene_id "BC016423"; transcript_id "BC016423"; exon_number "14"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445";
+chr13	Cufflinks	exon	3596023	3596123	1000	-	.	gene_id "BC016423"; transcript_id "BC016423"; exon_number "15"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445";
+chr13	Cufflinks	exon	3598898	3598997	1000	-	.	gene_id "BC016423"; transcript_id "BC016423"; exon_number "16"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445";
+chr13	Cufflinks	exon	3599083	3599102	1000	-	.	gene_id "BC016423"; transcript_id "BC016423"; exon_number "17"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445";
+chr13	Cufflinks	exon	3599185	3599308	1000	-	.	gene_id "BC016423"; transcript_id "BC016423"; exon_number "18"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445";
+chr13	Cufflinks	exon	3599438	3599580	1000	-	.	gene_id "BC016423"; transcript_id "BC016423"; exon_number "19"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445";
+chr13	Cufflinks	exon	3610036	3610354	1000	-	.	gene_id "BC016423"; transcript_id "BC016423"; exon_number "20"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445";
+chr13	Cufflinks	transcript	8202155	8759554	1000	+	.	gene_id "Adarb2"; transcript_id "Adarb2"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795";
+chr13	Cufflinks	exon	8202155	8202566	1000	+	.	gene_id "Adarb2"; transcript_id "Adarb2"; exon_number "1"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795";
+chr13	Cufflinks	exon	8558350	8558436	1000	+	.	gene_id "Adarb2"; transcript_id "Adarb2"; exon_number "2"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795";
+chr13	Cufflinks	exon	8568913	8569820	1000	+	.	gene_id "Adarb2"; transcript_id "Adarb2"; exon_number "3"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795";
+chr13	Cufflinks	exon	8671651	8671765	1000	+	.	gene_id "Adarb2"; transcript_id "Adarb2"; exon_number "4"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795";
+chr13	Cufflinks	exon	8696866	8697034	1000	+	.	gene_id "Adarb2"; transcript_id "Adarb2"; exon_number "5"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795";
+chr13	Cufflinks	exon	8700826	8700977	1000	+	.	gene_id "Adarb2"; transcript_id "Adarb2"; exon_number "6"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795";
+chr13	Cufflinks	exon	8712846	8713014	1000	+	.	gene_id "Adarb2"; transcript_id "Adarb2"; exon_number "7"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795";
+chr13	Cufflinks	exon	8731036	8731217	1000	+	.	gene_id "Adarb2"; transcript_id "Adarb2"; exon_number "8"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795";
+chr13	Cufflinks	exon	8751819	8751997	1000	+	.	gene_id "Adarb2"; transcript_id "Adarb2"; exon_number "9"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795";
+chr13	Cufflinks	exon	8756472	8759554	1000	+	.	gene_id "Adarb2"; transcript_id "Adarb2"; exon_number "10"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795";
+chr13	Cufflinks	transcript	8884852	8891641	1000	+	.	gene_id "Idi1"; transcript_id "Idi1"; FPKM "8.4668138233"; frac "1.000000"; conf_lo "6.232490"; conf_hi "10.701138"; cov "0.541122";
+chr13	Cufflinks	exon	8884852	8885242	1000	+	.	gene_id "Idi1"; transcript_id "Idi1"; exon_number "1"; FPKM "8.4668138233"; frac "1.000000"; conf_lo "6.232490"; conf_hi "10.701138"; cov "0.541122";
+chr13	Cufflinks	exon	8885978	8886150	1000	+	.	gene_id "Idi1"; transcript_id "Idi1"; exon_number "2"; FPKM "8.4668138233"; frac "1.000000"; conf_lo "6.232490"; conf_hi "10.701138"; cov "0.541122";
+chr13	Cufflinks	exon	8886731	8886823	1000	+	.	gene_id "Idi1"; transcript_id "Idi1"; exon_number "3"; FPKM "8.4668138233"; frac "1.000000"; conf_lo "6.232490"; conf_hi "10.701138"; cov "0.541122";
+chr13	Cufflinks	exon	8887169	8887299	1000	+	.	gene_id "Idi1"; transcript_id "Idi1"; exon_number "4"; FPKM "8.4668138233"; frac "1.000000"; conf_lo "6.232490"; conf_hi "10.701138"; cov "0.541122";
+chr13	Cufflinks	exon	8889564	8891641	1000	+	.	gene_id "Idi1"; transcript_id "Idi1"; exon_number "5"; FPKM "8.4668138233"; frac "1.000000"; conf_lo "6.232490"; conf_hi "10.701138"; cov "0.541122";
+chr13	Cufflinks	transcript	8802214	8870288	1000	-	.	gene_id "Wdr37"; transcript_id "Wdr37_dup1"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024";
+chr13	Cufflinks	exon	8802214	8805192	1000	-	.	gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "1"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024";
+chr13	Cufflinks	exon	8819109	8819223	1000	-	.	gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "2"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024";
+chr13	Cufflinks	exon	8819657	8819791	1000	-	.	gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "3"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024";
+chr13	Cufflinks	exon	8834543	8834684	1000	-	.	gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "4"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024";
+chr13	Cufflinks	exon	8836029	8836269	1000	-	.	gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "5"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024";
+chr13	Cufflinks	exon	8841976	8842052	1000	-	.	gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "6"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024";
+chr13	Cufflinks	exon	8844033	8844077	1000	-	.	gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "7"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024";
+chr13	Cufflinks	exon	8846861	8846932	1000	-	.	gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "8"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024";
+chr13	Cufflinks	exon	8848780	8848915	1000	-	.	gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "9"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024";
+chr13	Cufflinks	exon	8852916	8852980	1000	-	.	gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "10"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024";
+chr13	Cufflinks	exon	8853246	8853341	1000	-	.	gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "11"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024";
+chr13	Cufflinks	exon	8856078	8856174	1000	-	.	gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "12"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024";
+chr13	Cufflinks	exon	8860334	8860511	1000	-	.	gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "13"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024";
+chr13	Cufflinks	exon	8870116	8870288	1000	-	.	gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "14"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024";
+chr13	Cufflinks	transcript	8849725	8870288	157	-	.	gene_id "Wdr37"; transcript_id "Wdr37_dup2"; FPKM "1.7230711203"; frac "0.122182"; conf_lo "0.834480"; conf_hi "2.611663"; cov "0.110123";
+chr13	Cufflinks	exon	8849725	8852980	157	-	.	gene_id "Wdr37"; transcript_id "Wdr37_dup2"; exon_number "1"; FPKM "1.7230711203"; frac "0.122182"; conf_lo "0.834480"; conf_hi "2.611663"; cov "0.110123";
+chr13	Cufflinks	exon	8853246	8853341	157	-	.	gene_id "Wdr37"; transcript_id "Wdr37_dup2"; exon_number "2"; FPKM "1.7230711203"; frac "0.122182"; conf_lo "0.834480"; conf_hi "2.611663"; cov "0.110123";
+chr13	Cufflinks	exon	8856078	8856174	157	-	.	gene_id "Wdr37"; transcript_id "Wdr37_dup2"; exon_number "3"; FPKM "1.7230711203"; frac "0.122182"; conf_lo "0.834480"; conf_hi "2.611663"; cov "0.110123";
+chr13	Cufflinks	exon	8860334	8860511	157	-	.	gene_id "Wdr37"; transcript_id "Wdr37_dup2"; exon_number "4"; FPKM "1.7230711203"; frac "0.122182"; conf_lo "0.834480"; conf_hi "2.611663"; cov "0.110123";
+chr13	Cufflinks	exon	8870116	8870288	157	-	.	gene_id "Wdr37"; transcript_id "Wdr37_dup2"; exon_number "5"; FPKM "1.7230711203"; frac "0.122182"; conf_lo "0.834480"; conf_hi "2.611663"; cov "0.110123";
+chr13	Cufflinks	transcript	8971724	8995258	1000	-	.	gene_id "Gtpbp4"; transcript_id "Gtpbp4"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674";
+chr13	Cufflinks	exon	8971724	8972520	1000	-	.	gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "1"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674";
+chr13	Cufflinks	exon	8973410	8973553	1000	-	.	gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "2"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674";
+chr13	Cufflinks	exon	8974191	8974256	1000	-	.	gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "3"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674";
+chr13	Cufflinks	exon	8976482	8976679	1000	-	.	gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "4"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674";
+chr13	Cufflinks	exon	8977774	8977874	1000	-	.	gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "5"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674";
+chr13	Cufflinks	exon	8978675	8978726	1000	-	.	gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "6"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674";
+chr13	Cufflinks	exon	8979148	8979225	1000	-	.	gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "7"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674";
+chr13	Cufflinks	exon	8984455	8984565	1000	-	.	gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "8"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674";
+chr13	Cufflinks	exon	8984884	8984973	1000	-	.	gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "9"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674";
+chr13	Cufflinks	exon	8986495	8986560	1000	-	.	gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "10"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674";
+chr13	Cufflinks	exon	8987002	8987193	1000	-	.	gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "11"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674";
+chr13	Cufflinks	exon	8988299	8988391	1000	-	.	gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "12"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674";
+chr13	Cufflinks	exon	8989944	8990044	1000	-	.	gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "13"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674";
+chr13	Cufflinks	exon	8990961	8991097	1000	-	.	gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "14"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674";
+chr13	Cufflinks	exon	8991178	8991281	1000	-	.	gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "15"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674";
+chr13	Cufflinks	exon	8991891	8992061	1000	-	.	gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "16"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674";
+chr13	Cufflinks	exon	8995195	8995258	1000	-	.	gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "17"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674";
+chr13	Cufflinks	transcript	6547403	6579395	1000	+	.	gene_id "Pitrm1"; transcript_id "Pitrm1"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562";
+chr13	Cufflinks	exon	6547403	6547475	1000	+	.	gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "1"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562";
+chr13	Cufflinks	exon	6548826	6548928	1000	+	.	gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "2"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562";
+chr13	Cufflinks	exon	6551880	6551986	1000	+	.	gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "3"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562";
+chr13	Cufflinks	exon	6552428	6552579	1000	+	.	gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "4"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562";
+chr13	Cufflinks	exon	6554600	6554714	1000	+	.	gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "5"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562";
+chr13	Cufflinks	exon	6554798	6554894	1000	+	.	gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "6"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562";
+chr13	Cufflinks	exon	6555788	6555948	1000	+	.	gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "7"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562";
+chr13	Cufflinks	exon	6557008	6557134	1000	+	.	gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "8"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562";
+chr13	Cufflinks	exon	6557402	6557490	1000	+	.	gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "9"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562";
+chr13	Cufflinks	exon	6558601	6558729	1000	+	.	gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "10"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562";
+chr13	Cufflinks	exon	6559276	6559389	1000	+	.	gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "11"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562";
+chr13	Cufflinks	exon	6559848	6559944	1000	+	.	gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "12"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562";
+chr13	Cufflinks	exon	6561199	6561333	1000	+	.	gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "13"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562";
+chr13	Cufflinks	exon	6562622	6562760	1000	+	.	gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "14"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562";
+chr13	Cufflinks	exon	6564237	6564353	1000	+	.	gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "15"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562";
+chr13	Cufflinks	exon	6566596	6566728	1000	+	.	gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "16"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562";
+chr13	Cufflinks	exon	6567910	6568030	1000	+	.	gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "17"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562";
+chr13	Cufflinks	exon	6568145	6568221	1000	+	.	gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "18"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562";
+chr13	Cufflinks	exon	6568446	6568611	1000	+	.	gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "19"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562";
+chr13	Cufflinks	exon	6569848	6569948	1000	+	.	gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "20"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562";
+chr13	Cufflinks	exon	6572287	6572407	1000	+	.	gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "21"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562";
+chr13	Cufflinks	exon	6573606	6573677	1000	+	.	gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "22"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562";
+chr13	Cufflinks	exon	6574263	6574375	1000	+	.	gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "23"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562";
+chr13	Cufflinks	exon	6576636	6576761	1000	+	.	gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "24"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562";
+chr13	Cufflinks	exon	6577687	6577832	1000	+	.	gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "25"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562";
+chr13	Cufflinks	exon	6578664	6578766	1000	+	.	gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "26"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562";
+chr13	Cufflinks	exon	6578896	6579395	1000	+	.	gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "27"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562";
+chr13	Cufflinks	transcript	6579120	6647970	1000	-	.	gene_id "Pfkp"; transcript_id "Pfkp"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915";
+chr13	Cufflinks	exon	6579120	6580838	1000	-	.	gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "1"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915";
+chr13	Cufflinks	exon	6581649	6581751	1000	-	.	gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "2"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915";
+chr13	Cufflinks	exon	6583847	6583946	1000	-	.	gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "3"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915";
+chr13	Cufflinks	exon	6585726	6585837	1000	-	.	gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "4"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915";
+chr13	Cufflinks	exon	6586298	6586359	1000	-	.	gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "5"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915";
+chr13	Cufflinks	exon	6587735	6587899	1000	-	.	gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "6"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915";
+chr13	Cufflinks	exon	6597105	6597257	1000	-	.	gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "7"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915";
+chr13	Cufflinks	exon	6597985	6598072	1000	-	.	gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "8"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915";
+chr13	Cufflinks	exon	6599842	6599912	1000	-	.	gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "9"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915";
+chr13	Cufflinks	exon	6601959	6602105	1000	-	.	gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "10"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915";
+chr13	Cufflinks	exon	6602325	6602394	1000	-	.	gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "11"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915";
+chr13	Cufflinks	exon	6602645	6602709	1000	-	.	gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "12"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915";
+chr13	Cufflinks	exon	6604202	6604327	1000	-	.	gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "13"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915";
+chr13	Cufflinks	exon	6604882	6604974	1000	-	.	gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "14"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915";
+chr13	Cufflinks	exon	6613950	6614045	1000	-	.	gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "15"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915";
+chr13	Cufflinks	exon	6618421	6618529	1000	-	.	gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "16"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915";
+chr13	Cufflinks	exon	6618766	6618810	1000	-	.	gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "17"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915";
+chr13	Cufflinks	exon	6620132	6620297	1000	-	.	gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "18"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915";
+chr13	Cufflinks	exon	6621153	6621342	1000	-	.	gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "19"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915";
+chr13	Cufflinks	exon	6624382	6624459	1000	-	.	gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "20"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915";
+chr13	Cufflinks	exon	6635171	6635244	1000	-	.	gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "21"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915";
+chr13	Cufflinks	exon	6647817	6647970	1000	-	.	gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "22"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915";
+chr13	Cufflinks	transcript	9093151	9172336	1000	+	.	gene_id "Larp4b"; transcript_id "Larp4b"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020";
+chr13	Cufflinks	exon	9093151	9093426	1000	+	.	gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "1"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020";
+chr13	Cufflinks	exon	9121354	9121472	1000	+	.	gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "2"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020";
+chr13	Cufflinks	exon	9123149	9123208	1000	+	.	gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "3"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020";
+chr13	Cufflinks	exon	9136025	9136172	1000	+	.	gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "4"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020";
+chr13	Cufflinks	exon	9136401	9136547	1000	+	.	gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "5"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020";
+chr13	Cufflinks	exon	9143000	9143078	1000	+	.	gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "6"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020";
+chr13	Cufflinks	exon	9144628	9144764	1000	+	.	gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "7"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020";
+chr13	Cufflinks	exon	9146647	9146750	1000	+	.	gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "8"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020";
+chr13	Cufflinks	exon	9149072	9149182	1000	+	.	gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "9"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020";
+chr13	Cufflinks	exon	9150111	9150164	1000	+	.	gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "10"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020";
+chr13	Cufflinks	exon	9150261	9150470	1000	+	.	gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "11"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020";
+chr13	Cufflinks	exon	9157369	9157475	1000	+	.	gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "12"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020";
+chr13	Cufflinks	exon	9157797	9158048	1000	+	.	gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "13"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020";
+chr13	Cufflinks	exon	9163921	9163966	1000	+	.	gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "14"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020";
+chr13	Cufflinks	exon	9165563	9165727	1000	+	.	gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "15"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020";
+chr13	Cufflinks	exon	9167924	9168048	1000	+	.	gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "16"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020";
+chr13	Cufflinks	exon	9168144	9168252	1000	+	.	gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "17"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020";
+chr13	Cufflinks	exon	9169898	9172336	1000	+	.	gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "18"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020";
+chr13	Cufflinks	transcript	9275772	9668171	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9275772	9276312	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "1"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9492351	9492422	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "2"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9505825	9505935	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "3"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9532498	9532623	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "4"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9535902	9536111	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "5"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9549430	9549564	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "6"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9550992	9551111	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "7"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9552520	9552717	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "8"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9559917	9560008	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "9"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9562360	9562470	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "10"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9567077	9567200	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "11"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9567547	9567656	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "12"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9567837	9567939	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "13"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9570296	9570360	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "14"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9574380	9574473	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "15"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9574608	9574727	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "16"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9576050	9576164	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "17"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9583251	9583267	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "18"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9591990	9592004	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "19"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9600632	9600742	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "20"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9603735	9603871	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "21"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9605569	9605777	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "22"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9608190	9608304	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "23"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9609943	9610144	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "24"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9613593	9613702	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "25"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9614991	9615071	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "26"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9621125	9621248	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "27"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9621828	9621949	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "28"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9623003	9623114	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "29"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9623204	9623313	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "30"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9627219	9627349	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "31"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9633968	9634136	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "32"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9636341	9636511	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "33"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9646225	9646286	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "34"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9653849	9653906	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "35"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9655883	9655957	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "36"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9658491	9658665	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "37"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9661383	9661506	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "38"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	exon	9665024	9668171	1000	+	.	gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "39"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13	Cufflinks	transcript	9684082	9764454	1000	-	.	gene_id "Zmynd11"; transcript_id "Zmynd11"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453";
+chr13	Cufflinks	exon	9684082	9686230	1000	-	.	gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "1"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453";
+chr13	Cufflinks	exon	9688309	9688494	1000	-	.	gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "2"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453";
+chr13	Cufflinks	exon	9688698	9688970	1000	-	.	gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "3"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453";
+chr13	Cufflinks	exon	9689692	9689760	1000	-	.	gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "4"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453";
+chr13	Cufflinks	exon	9690149	9690356	1000	-	.	gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "5"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453";
+chr13	Cufflinks	exon	9692676	9692794	1000	-	.	gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "6"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453";
+chr13	Cufflinks	exon	9693515	9693592	1000	-	.	gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "7"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453";
+chr13	Cufflinks	exon	9694375	9694430	1000	-	.	gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "8"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453";
+chr13	Cufflinks	exon	9694985	9695072	1000	-	.	gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "9"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453";
+chr13	Cufflinks	exon	9696890	9696982	1000	-	.	gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "10"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453";
+chr13	Cufflinks	exon	9697874	9697951	1000	-	.	gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "11"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453";
+chr13	Cufflinks	exon	9720019	9720178	1000	-	.	gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "12"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453";
+chr13	Cufflinks	exon	9734578	9734712	1000	-	.	gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "13"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453";
+chr13	Cufflinks	exon	9764301	9764454	1000	-	.	gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "14"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453";
+chr13	Cufflinks	transcript	9875859	10360049	1000	-	.	gene_id "Chrm3"; transcript_id "Chrm3"; FPKM "1.0668249949"; frac "1.000000"; conf_lo "0.312466"; conf_hi "1.821184"; cov "0.068182";
+chr13	Cufflinks	exon	9875859	9878263	1000	-	.	gene_id "Chrm3"; transcript_id "Chrm3"; exon_number "1"; FPKM "1.0668249949"; frac "1.000000"; conf_lo "0.312466"; conf_hi "1.821184"; cov "0.068182";
+chr13	Cufflinks	exon	10027699	10027745	1000	-	.	gene_id "Chrm3"; transcript_id "Chrm3"; exon_number "2"; FPKM "1.0668249949"; frac "1.000000"; conf_lo "0.312466"; conf_hi "1.821184"; cov "0.068182";
+chr13	Cufflinks	exon	10121473	10121535	1000	-	.	gene_id "Chrm3"; transcript_id "Chrm3"; exon_number "3"; FPKM "1.0668249949"; frac "1.000000"; conf_lo "0.312466"; conf_hi "1.821184"; cov "0.068182";
+chr13	Cufflinks	exon	10223891	10224003	1000	-	.	gene_id "Chrm3"; transcript_id "Chrm3"; exon_number "4"; FPKM "1.0668249949"; frac "1.000000"; conf_lo "0.312466"; conf_hi "1.821184"; cov "0.068182";
+chr13	Cufflinks	exon	10359510	10360049	1000	-	.	gene_id "Chrm3"; transcript_id "Chrm3"; exon_number "5"; FPKM "1.0668249949"; frac "1.000000"; conf_lo "0.312466"; conf_hi "1.821184"; cov "0.068182";
+chr13	Cufflinks	transcript	11645370	12199212	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11645370	11646878	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "1"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11647698	11647749	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "2"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11648865	11648965	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "3"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11650314	11650378	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "4"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11652791	11652947	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "5"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11659115	11659249	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "6"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11660739	11660885	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "7"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11664513	11664573	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "8"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11670047	11670180	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "9"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11676403	11676445	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "10"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11677675	11677805	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "11"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11679483	11679704	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "12"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11680409	11680495	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "13"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11683492	11683639	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "14"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11685360	11685424	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "15"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11686949	11688246	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "16"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11689338	11689419	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "17"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11690773	11690877	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "18"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11694026	11694154	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "19"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11695952	11696040	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "20"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11697423	11697503	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "21"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11710874	11710947	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "22"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11711737	11711813	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "23"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11713582	11713661	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "24"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11715169	11715268	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "25"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11727792	11727845	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "26"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11730699	11730750	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "27"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11732541	11732644	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "28"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11736071	11736167	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "29"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11738760	11738872	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "30"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11739969	11740004	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "31"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11741997	11742131	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "32"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11746633	11746692	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "33"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11747885	11748055	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "34"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11749300	11749392	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "35"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11751217	11751304	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "36"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11752368	11752608	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "37"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11754333	11754653	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "38"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11758148	11758278	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "39"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11759346	11759427	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "40"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11761080	11761318	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "41"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11762196	11762256	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "42"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11768465	11768514	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "43"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11773233	11773354	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "44"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11776729	11776793	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "45"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11779210	11779325	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "46"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11780157	11780280	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "47"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11782559	11782634	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "48"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11784906	11784983	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "49"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11792515	11792652	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "50"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11793046	11793135	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "51"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11795764	11795842	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "52"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11797902	11798065	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "53"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11798849	11798989	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "54"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11800049	11800139	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "55"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11800289	11800509	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "56"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11802184	11802353	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "57"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11804402	11804522	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "58"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11806784	11806889	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "59"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11809208	11809394	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "60"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11810637	11810772	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "61"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11814018	11814121	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "62"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11814998	11815130	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "63"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11816530	11816644	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "64"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11819124	11819397	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "65"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11822610	11822753	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "66"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11823913	11824018	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "67"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11827738	11827938	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "68"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11829989	11830787	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "69"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11834121	11834347	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "70"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11837445	11837531	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "71"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11837864	11838026	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "72"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11839755	11839915	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "73"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11841703	11841817	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "74"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11842956	11843308	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "75"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11844463	11844671	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "76"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11851938	11852112	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "77"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11853494	11853702	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "78"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11862119	11862266	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "79"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11864687	11864846	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "80"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11871452	11871535	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "81"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11877305	11877408	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "82"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11882526	11882630	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "83"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11884936	11885152	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "84"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11886809	11887001	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "85"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11891949	11892190	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "86"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11893405	11893538	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "87"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11894074	11894192	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "88"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11903150	11903245	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "89"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11916541	11916676	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "90"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11919801	11919984	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "91"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11921824	11921945	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "92"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11926191	11926355	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "93"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11943325	11943481	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "94"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11945383	11945457	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "95"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11960384	11960480	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "96"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11961384	11961483	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "97"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11971742	11971854	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "98"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11975312	11975390	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "99"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11977731	11977805	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "100"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11983101	11983115	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "101"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	11995485	11995505	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "102"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	12010578	12010682	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "103"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	12038150	12038269	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "104"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	exon	12198666	12199212	1000	-	.	gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "105"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13	Cufflinks	transcript	12279086	12350267	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12279086	12279358	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "1"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12280308	12280420	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "2"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12281614	12281806	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "3"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12282471	12282671	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "4"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12285881	12286077	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "5"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12287505	12287660	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "6"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12290180	12290255	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "7"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12291313	12291411	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "8"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12292464	12292545	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "9"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12297010	12297130	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "10"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12297557	12297624	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "11"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12304655	12304755	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "12"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12304938	12305045	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "13"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12307680	12307832	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "14"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12309077	12309166	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "15"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12313689	12313829	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "16"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12314422	12314538	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "17"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12317729	12317908	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "18"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12319951	12320136	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "19"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12323212	12323352	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "20"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12325169	12325281	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "21"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12327724	12327803	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "22"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12330248	12330315	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "23"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12331916	12331977	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "24"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12333832	12333932	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "25"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12336202	12336296	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "26"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12336822	12336884	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "27"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12339586	12339692	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "28"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12340160	12340252	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "29"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12342112	12342181	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "30"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12342869	12342958	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "31"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12346031	12346245	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "32"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	exon	12350129	12350267	1000	-	.	gene_id "Mtr"; transcript_id "Mtr"; exon_number "33"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13	Cufflinks	transcript	12361694	12432999	1000	-	.	gene_id "Actn2"; transcript_id "Actn2"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255";
+chr13	Cufflinks	exon	12361694	12361919	1000	-	.	gene_id "Actn2"; transcript_id "Actn2"; exon_number "1"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255";
+chr13	Cufflinks	exon	12363045	12363203	1000	-	.	gene_id "Actn2"; transcript_id "Actn2"; exon_number "2"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255";
+chr13	Cufflinks	exon	12364966	12365031	1000	-	.	gene_id "Actn2"; transcript_id "Actn2"; exon_number "3"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255";
+chr13	Cufflinks	exon	12367345	12367491	1000	-	.	gene_id "Actn2"; transcript_id "Actn2"; exon_number "4"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255";
+chr13	Cufflinks	exon	12368630	12368809	1000	-	.	gene_id "Actn2"; transcript_id "Actn2"; exon_number "5"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255";
+chr13	Cufflinks	exon	12369666	12369800	1000	-	.	gene_id "Actn2"; transcript_id "Actn2"; exon_number "6"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255";
+chr13	Cufflinks	exon	12371061	12371243	1000	-	.	gene_id "Actn2"; transcript_id "Actn2"; exon_number "7"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255";
+chr13	Cufflinks	exon	12372696	12372836	1000	-	.	gene_id "Actn2"; transcript_id "Actn2"; exon_number "8"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255";
+chr13	Cufflinks	exon	12374782	12374890	1000	-	.	gene_id "Actn2"; transcript_id "Actn2"; exon_number "9"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255";
+chr13	Cufflinks	exon	12380774	12380924	1000	-	.	gene_id "Actn2"; transcript_id "Actn2"; exon_number "10"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255";
+chr13	Cufflinks	exon	12382941	12383088	1000	-	.	gene_id "Actn2"; transcript_id "Actn2"; exon_number "11"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255";
+chr13	Cufflinks	exon	12383927	12384157	1000	-	.	gene_id "Actn2"; transcript_id "Actn2"; exon_number "12"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255";
+chr13	Cufflinks	exon	12386577	12386669	1000	-	.	gene_id "Actn2"; transcript_id "Actn2"; exon_number "13"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255";
+chr13	Cufflinks	exon	12388742	12388827	1000	-	.	gene_id "Actn2"; transcript_id "Actn2"; exon_number "14"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255";
+chr13	Cufflinks	exon	12393202	12393283	1000	-	.	gene_id "Actn2"; transcript_id "Actn2"; exon_number "15"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255";
+chr13	Cufflinks	exon	12396581	12396659	1000	-	.	gene_id "Actn2"; transcript_id "Actn2"; exon_number "16"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255";
+chr13	Cufflinks	exon	12398541	12398628	1000	-	.	gene_id "Actn2"; transcript_id "Actn2"; exon_number "17"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255";
+chr13	Cufflinks	exon	12401167	12401253	1000	-	.	gene_id "Actn2"; transcript_id "Actn2"; exon_number "18"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255";
+chr13	Cufflinks	exon	12401862	12401981	1000	-	.	gene_id "Actn2"; transcript_id "Actn2"; exon_number "19"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255";
+chr13	Cufflinks	exon	12403114	12403228	1000	-	.	gene_id "Actn2"; transcript_id "Actn2"; exon_number "20"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255";
+chr13	Cufflinks	exon	12432642	12432999	1000	-	.	gene_id "Actn2"; transcript_id "Actn2"; exon_number "21"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255";
+chr13	Cufflinks	transcript	12487642	12531160	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12487642	12487737	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "1"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12488007	12488180	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "2"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12488689	12488905	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "3"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12491170	12491311	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "4"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12493317	12493418	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "5"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12493717	12493857	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "6"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12494981	12495192	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "7"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12495412	12495545	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "8"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12497155	12497257	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "9"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12498290	12498400	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "10"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12498792	12498909	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "11"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12499784	12499891	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "12"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12500921	12501016	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "13"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12501476	12501564	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "14"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12502663	12502874	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "15"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12503487	12503608	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "16"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12504312	12504503	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "17"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12505492	12505675	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "18"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12505779	12505915	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "19"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12506640	12506832	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "20"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12507684	12507853	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "21"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12508218	12508376	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "22"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12509727	12509969	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "23"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12510365	12510496	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "24"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12513309	12513412	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "25"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12513545	12513688	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "26"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12514308	12514426	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "27"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12514508	12514629	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "28"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12515901	12516029	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "29"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12516887	12517117	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "30"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12518421	12518547	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "31"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12519029	12519189	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "32"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12522034	12522080	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "33"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12522408	12522531	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "34"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12523178	12523318	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "35"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12523947	12524239	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "36"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12524896	12525046	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "37"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12525879	12526037	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "38"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12526184	12526318	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "39"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12526454	12526558	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "40"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12526641	12526809	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "41"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12527314	12527468	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "42"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12527937	12528095	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "43"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12530101	12530209	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "44"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	exon	12530856	12531160	1000	+	.	gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "45"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632";
+chr13	Cufflinks	transcript	12531686	12553757	1000	-	.	gene_id "Lgals8"; transcript_id "Lgals8"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514";
+chr13	Cufflinks	exon	12531686	12533261	1000	-	.	gene_id "Lgals8"; transcript_id "Lgals8"; exon_number "1"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514";
+chr13	Cufflinks	exon	12539414	12539579	1000	-	.	gene_id "Lgals8"; transcript_id "Lgals8"; exon_number "2"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514";
+chr13	Cufflinks	exon	12540686	12540774	1000	-	.	gene_id "Lgals8"; transcript_id "Lgals8"; exon_number "3"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514";
+chr13	Cufflinks	exon	12543668	12543694	1000	-	.	gene_id "Lgals8"; transcript_id "Lgals8"; exon_number "4"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514";
+chr13	Cufflinks	exon	12544989	12545045	1000	-	.	gene_id "Lgals8"; transcript_id "Lgals8"; exon_number "5"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514";
+chr13	Cufflinks	exon	12545552	12545671	1000	-	.	gene_id "Lgals8"; transcript_id "Lgals8"; exon_number "6"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514";
+chr13	Cufflinks	exon	12547002	12547212	1000	-	.	gene_id "Lgals8"; transcript_id "Lgals8"; exon_number "7"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514";
+chr13	Cufflinks	exon	12548611	12548699	1000	-	.	gene_id "Lgals8"; transcript_id "Lgals8"; exon_number "8"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514";
+chr13	Cufflinks	exon	12551441	12551583	1000	-	.	gene_id "Lgals8"; transcript_id "Lgals8"; exon_number "9"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514";
+chr13	Cufflinks	exon	12553694	12553757	1000	-	.	gene_id "Lgals8"; transcript_id "Lgals8"; exon_number "10"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514";
+chr13	Cufflinks	transcript	12569175	12612715	1000	-	.	gene_id "Edaradd"; transcript_id "Edaradd"; FPKM "1.7587955787"; frac "1.000000"; conf_lo "0.646436"; conf_hi "2.871156"; cov "0.112406";
+chr13	Cufflinks	exon	12569175	12570841	1000	-	.	gene_id "Edaradd"; transcript_id "Edaradd"; exon_number "1"; FPKM "1.7587955787"; frac "1.000000"; conf_lo "0.646436"; conf_hi "2.871156"; cov "0.112406";
+chr13	Cufflinks	exon	12575867	12575912	1000	-	.	gene_id "Edaradd"; transcript_id "Edaradd"; exon_number "2"; FPKM "1.7587955787"; frac "1.000000"; conf_lo "0.646436"; conf_hi "2.871156"; cov "0.112406";
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/gops_subtract_out1.gff	Tue Apr 01 10:52:51 2014 -0400
@@ -0,0 +1,64 @@
+chr13	Cufflinks	transcript	3405463	3405542	1000	+	.	gene_id "CUFF.50189"; transcript_id "CUFF.50189.1"; FPKM "6.3668918357"; frac "1.000000"; conf_lo "0.000000"; conf_hi "17.963819"; cov "0.406914";
+chr13	Cufflinks	exon	3405463	3405542	1000	+	.	gene_id "CUFF.50189"; transcript_id "CUFF.50189.1"; exon_number "1"; FPKM "6.3668918357"; frac "1.000000"; conf_lo "0.000000"; conf_hi "17.963819"; cov "0.406914";
+chr13	Cufflinks	transcript	3473337	3473372	1000	+	.	gene_id "CUFF.50191"; transcript_id "CUFF.50191.1"; FPKM "11.7350749444"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.205225"; cov "0.750000";
+chr13	Cufflinks	exon	3473337	3473372	1000	+	.	gene_id "CUFF.50191"; transcript_id "CUFF.50191.1"; exon_number "1"; FPKM "11.7350749444"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.205225"; cov "0.750000";
+chr13	Cufflinks	transcript	3490319	3490350	1000	+	.	gene_id "CUFF.50193"; transcript_id "CUFF.50193.1"; FPKM "39.6058779373"; frac "1.000000"; conf_lo "0.000000"; conf_hi "85.338807"; cov "2.531250";
+chr13	Cufflinks	exon	3490319	3490350	1000	+	.	gene_id "CUFF.50193"; transcript_id "CUFF.50193.1"; exon_number "1"; FPKM "39.6058779373"; frac "1.000000"; conf_lo "0.000000"; conf_hi "85.338807"; cov "2.531250";
+chr13	Cufflinks	transcript	3612524	3612550	1000	+	.	gene_id "CUFF.50213"; transcript_id "CUFF.50213.1"; FPKM "117.3321730764"; frac "1.000000"; conf_lo "31.638086"; conf_hi "203.026260"; cov "7.498813";
+chr13	Cufflinks	exon	3612524	3612550	1000	+	.	gene_id "CUFF.50213"; transcript_id "CUFF.50213.1"; exon_number "1"; FPKM "117.3321730764"; frac "1.000000"; conf_lo "31.638086"; conf_hi "203.026260"; cov "7.498813";
+chr13	Cufflinks	transcript	3652248	3652287	1000	+	.	gene_id "CUFF.50225"; transcript_id "CUFF.50225.1"; FPKM "21.1231348999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "50.995759"; cov "1.350000";
+chr13	Cufflinks	exon	3652248	3652287	1000	+	.	gene_id "CUFF.50225"; transcript_id "CUFF.50225.1"; exon_number "1"; FPKM "21.1231348999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "50.995759"; cov "1.350000";
+chr13	Cufflinks	transcript	3652708	3652757	1000	+	.	gene_id "CUFF.50227"; transcript_id "CUFF.50227.1"; FPKM "16.8985079199"; frac "1.000000"; conf_lo "0.000000"; conf_hi "40.796607"; cov "1.080000";
+chr13	Cufflinks	exon	3652708	3652757	1000	+	.	gene_id "CUFF.50227"; transcript_id "CUFF.50227.1"; exon_number "1"; FPKM "16.8985079199"; frac "1.000000"; conf_lo "0.000000"; conf_hi "40.796607"; cov "1.080000";
+chr13	Cufflinks	transcript	3652858	3652892	1000	+	.	gene_id "CUFF.50229"; transcript_id "CUFF.50229.1"; FPKM "24.1407255999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "58.280867"; cov "1.542857";
+chr13	Cufflinks	exon	3652858	3652892	1000	+	.	gene_id "CUFF.50229"; transcript_id "CUFF.50229.1"; exon_number "1"; FPKM "24.1407255999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "58.280867"; cov "1.542857";
+chr13	Cufflinks	transcript	3881504	3881530	1000	+	.	gene_id "CUFF.50233"; transcript_id "CUFF.50233.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	3881504	3881530	1000	+	.	gene_id "CUFF.50233"; transcript_id "CUFF.50233.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	3940646	3940672	1000	+	.	gene_id "CUFF.50239"; transcript_id "CUFF.50239.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	3940646	3940672	1000	+	.	gene_id "CUFF.50239"; transcript_id "CUFF.50239.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	4253585	4253611	1000	+	.	gene_id "CUFF.50251"; transcript_id "CUFF.50251.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	4253585	4253611	1000	+	.	gene_id "CUFF.50251"; transcript_id "CUFF.50251.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	4356816	4356842	1000	+	.	gene_id "CUFF.50253"; transcript_id "CUFF.50253.1"; FPKM "31.2563804501"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.485841"; cov "1.997626";
+chr13	Cufflinks	exon	4356816	4356842	1000	+	.	gene_id "CUFF.50253"; transcript_id "CUFF.50253.1"; exon_number "1"; FPKM "31.2563804501"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.485841"; cov "1.997626";
+chr13	Cufflinks	transcript	6205097	6205155	1000	+	.	gene_id "CUFF.50321"; transcript_id "CUFF.50321.1"; FPKM "14.3207694237"; frac "1.000000"; conf_lo "0.000000"; conf_hi "34.573396"; cov "0.915254";
+chr13	Cufflinks	exon	6205097	6205155	1000	+	.	gene_id "CUFF.50321"; transcript_id "CUFF.50321.1"; exon_number "1"; FPKM "14.3207694237"; frac "1.000000"; conf_lo "0.000000"; conf_hi "34.573396"; cov "0.915254";
+chr13	Cufflinks	transcript	6227260	6227293	1000	+	.	gene_id "CUFF.50323"; transcript_id "CUFF.50323.1"; FPKM "18.6233083846"; frac "1.000000"; conf_lo "0.000000"; conf_hi "49.047086"; cov "1.190234";
+chr13	Cufflinks	exon	6227260	6227293	1000	+	.	gene_id "CUFF.50323"; transcript_id "CUFF.50323.1"; exon_number "1"; FPKM "18.6233083846"; frac "1.000000"; conf_lo "0.000000"; conf_hi "49.047086"; cov "1.190234";
+chr13	Cufflinks	transcript	6795860	6795886	1000	+	.	gene_id "CUFF.50399"; transcript_id "CUFF.50399.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	6795860	6795886	1000	+	.	gene_id "CUFF.50399"; transcript_id "CUFF.50399.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	7155940	7155966	1000	+	.	gene_id "CUFF.50401"; transcript_id "CUFF.50401.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	7155940	7155966	1000	+	.	gene_id "CUFF.50401"; transcript_id "CUFF.50401.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	7676033	7676123	1000	+	.	gene_id "CUFF.50403"; transcript_id "CUFF.50403.1"; FPKM "9.2848944615"; frac "1.000000"; conf_lo "0.000000"; conf_hi "22.415718"; cov "0.593407";
+chr13	Cufflinks	exon	7676033	7676123	1000	+	.	gene_id "CUFF.50403"; transcript_id "CUFF.50403.1"; exon_number "1"; FPKM "9.2848944615"; frac "1.000000"; conf_lo "0.000000"; conf_hi "22.415718"; cov "0.593407";
+chr13	Cufflinks	transcript	8766868	8767005	1000	+	.	gene_id "CUFF.50461"; transcript_id "CUFF.50461.1"; FPKM "12.2452955941"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.490591"; cov "0.782609";
+chr13	Cufflinks	exon	8766868	8767005	1000	+	.	gene_id "CUFF.50461"; transcript_id "CUFF.50461.1"; exon_number "1"; FPKM "12.2452955941"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.490591"; cov "0.782609";
+chr13	Cufflinks	transcript	8767194	8767393	1000	+	.	gene_id "CUFF.50463"; transcript_id "CUFF.50463.1"; FPKM "12.6738809399"; frac "1.000000"; conf_lo "2.325700"; conf_hi "23.022061"; cov "0.810000";
+chr13	Cufflinks	exon	8767194	8767393	1000	+	.	gene_id "CUFF.50463"; transcript_id "CUFF.50463.1"; exon_number "1"; FPKM "12.6738809399"; frac "1.000000"; conf_lo "2.325700"; conf_hi "23.022061"; cov "0.810000";
+chr13	Cufflinks	transcript	8767461	8767531	1000	+	.	gene_id "CUFF.50465"; transcript_id "CUFF.50465.1"; FPKM "17.8505365351"; frac "1.000000"; conf_lo "0.000000"; conf_hi "38.462561"; cov "1.140845";
+chr13	Cufflinks	exon	8767461	8767531	1000	+	.	gene_id "CUFF.50465"; transcript_id "CUFF.50465.1"; exon_number "1"; FPKM "17.8505365351"; frac "1.000000"; conf_lo "0.000000"; conf_hi "38.462561"; cov "1.140845";
+chr13	Cufflinks	transcript	8767695	8767885	1000	+	.	gene_id "CUFF.50467"; transcript_id "CUFF.50467.1"; FPKM "17.6947726910"; frac "1.000000"; conf_lo "5.182679"; conf_hi "30.206866"; cov "1.130890";
+chr13	Cufflinks	exon	8767695	8767885	1000	+	.	gene_id "CUFF.50467"; transcript_id "CUFF.50467.1"; exon_number "1"; FPKM "17.6947726910"; frac "1.000000"; conf_lo "5.182679"; conf_hi "30.206866"; cov "1.130890";
+chr13	Cufflinks	transcript	8767947	8767992	1000	+	.	gene_id "CUFF.50469"; transcript_id "CUFF.50469.1"; FPKM "27.5519150868"; frac "1.000000"; conf_lo "0.000000"; conf_hi "59.366126"; cov "1.760870";
+chr13	Cufflinks	exon	8767947	8767992	1000	+	.	gene_id "CUFF.50469"; transcript_id "CUFF.50469.1"; exon_number "1"; FPKM "27.5519150868"; frac "1.000000"; conf_lo "0.000000"; conf_hi "59.366126"; cov "1.760870";
+chr13	Cufflinks	transcript	8784118	8784193	1000	+	.	gene_id "CUFF.50471"; transcript_id "CUFF.50471.1"; FPKM "16.6761591315"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.932129"; cov "1.065789";
+chr13	Cufflinks	exon	8784118	8784193	1000	+	.	gene_id "CUFF.50471"; transcript_id "CUFF.50471.1"; exon_number "1"; FPKM "16.6761591315"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.932129"; cov "1.065789";
+chr13	Cufflinks	transcript	8965678	8965704	1000	+	.	gene_id "CUFF.50499"; transcript_id "CUFF.50499.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	8965678	8965704	1000	+	.	gene_id "CUFF.50499"; transcript_id "CUFF.50499.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	9272120	9272153	1000	+	.	gene_id "CUFF.50507"; transcript_id "CUFF.50507.1"; FPKM "24.8212432986"; frac "1.000000"; conf_lo "0.000000"; conf_hi "59.944638"; cov "1.586350";
+chr13	Cufflinks	exon	9272120	9272153	1000	+	.	gene_id "CUFF.50507"; transcript_id "CUFF.50507.1"; exon_number "1"; FPKM "24.8212432986"; frac "1.000000"; conf_lo "0.000000"; conf_hi "59.944638"; cov "1.586350";
+chr13	Cufflinks	transcript	9172647	9173652	1000	+	.	gene_id "CUFF.50513"; transcript_id "CUFF.50513.1"; FPKM "111.9143215254"; frac "1.000000"; conf_lo "98.203357"; conf_hi "125.625287"; cov "7.152553";
+chr13	Cufflinks	exon	9172647	9173652	1000	+	.	gene_id "CUFF.50513"; transcript_id "CUFF.50513.1"; exon_number "1"; FPKM "111.9143215254"; frac "1.000000"; conf_lo "98.203357"; conf_hi "125.625287"; cov "7.152553";
+chr13	Cufflinks	transcript	9678669	9678695	1000	+	.	gene_id "CUFF.50569"; transcript_id "CUFF.50569.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	9678669	9678695	1000	+	.	gene_id "CUFF.50569"; transcript_id "CUFF.50569.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	9868979	9869072	1000	+	.	gene_id "CUFF.50603"; transcript_id "CUFF.50603.1"; FPKM "13.4828520638"; frac "1.000000"; conf_lo "0.000000"; conf_hi "29.051509"; cov "0.861702";
+chr13	Cufflinks	exon	9868979	9869072	1000	+	.	gene_id "CUFF.50603"; transcript_id "CUFF.50603.1"; exon_number "1"; FPKM "13.4828520638"; frac "1.000000"; conf_lo "0.000000"; conf_hi "29.051509"; cov "0.861702";
+chr13	Cufflinks	transcript	9872853	9872934	1000	+	.	gene_id "CUFF.50605"; transcript_id "CUFF.50605.1"; FPKM "15.4559523658"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.302949"; cov "0.987805";
+chr13	Cufflinks	exon	9872853	9872934	1000	+	.	gene_id "CUFF.50605"; transcript_id "CUFF.50605.1"; exon_number "1"; FPKM "15.4559523658"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.302949"; cov "0.987805";
+chr13	Cufflinks	transcript	9874731	9874997	1000	+	.	gene_id "CUFF.50607"; transcript_id "CUFF.50607.1"; FPKM "12.6580583670"; frac "1.000000"; conf_lo "3.707459"; conf_hi "21.608657"; cov "0.808989";
+chr13	Cufflinks	exon	9874731	9874997	1000	+	.	gene_id "CUFF.50607"; transcript_id "CUFF.50607.1"; exon_number "1"; FPKM "12.6580583670"; frac "1.000000"; conf_lo "3.707459"; conf_hi "21.608657"; cov "0.808989";
+chr13	Cufflinks	transcript	9875128	9875201	1000	+	.	gene_id "CUFF.50609"; transcript_id "CUFF.50609.1"; FPKM "22.8358215134"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.671643"; cov "1.459459";
+chr13	Cufflinks	exon	9875128	9875201	1000	+	.	gene_id "CUFF.50609"; transcript_id "CUFF.50609.1"; exon_number "1"; FPKM "22.8358215134"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.671643"; cov "1.459459";
+chr13	Cufflinks	transcript	9875323	9875349	1000	+	.	gene_id "CUFF.50611"; transcript_id "CUFF.50611.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	exon	9875323	9875349	1000	+	.	gene_id "CUFF.50611"; transcript_id "CUFF.50611.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000";
+chr13	Cufflinks	transcript	9875425	9875480	1000	+	.	gene_id "CUFF.50613"; transcript_id "CUFF.50613.1"; FPKM "15.0879534999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "36.425542"; cov "0.964286";
+chr13	Cufflinks	exon	9875425	9875480	1000	+	.	gene_id "CUFF.50613"; transcript_id "CUFF.50613.1"; exon_number "1"; FPKM "15.0879534999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "36.425542"; cov "0.964286";
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Apr 01 10:52:51 2014 -0400
@@ -0,0 +1,9 @@
+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="bx-python" version="0.7.1">
+      <repository changeset_revision="41eb9d9f667d" name="package_bx_python_0_7" owner="devteam" prior_installation_required="False" toolshed="http://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="galaxy-ops" version="1.0.0">
+      <repository changeset_revision="4e39032e4ec6" name="package_galaxy_ops_1_0_0" owner="devteam" prior_installation_required="False" toolshed="http://toolshed.g2.bx.psu.edu" />
+    </package>
+</tool_dependency>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/utils/gff_util.py	Tue Apr 01 10:52:51 2014 -0400
@@ -0,0 +1,430 @@
+"""
+Provides utilities for working with GFF files.
+"""
+
+import copy
+from bx.intervals.io import *
+from bx.tabular.io import Header, Comment
+from utils.odict import odict
+
+class GFFInterval( GenomicInterval ):
+    """
+    A GFF interval, including attributes. If file is strictly a GFF file,
+    only attribute is 'group.'
+    """
+    def __init__( self, reader, fields, chrom_col=0, feature_col=2, start_col=3, end_col=4, \
+                  strand_col=6, score_col=5, default_strand='.', fix_strand=False ):
+        # HACK: GFF format allows '.' for strand but GenomicInterval does not. To get around this,
+        # temporarily set strand and then unset after initing GenomicInterval.
+        unknown_strand = False
+        if not fix_strand and fields[ strand_col ] == '.':
+            unknown_strand = True
+            fields[ strand_col ] = '+'
+        GenomicInterval.__init__( self, reader, fields, chrom_col, start_col, end_col, strand_col, \
+                                  default_strand, fix_strand=fix_strand )
+        if unknown_strand:
+            self.strand = '.'
+            self.fields[ strand_col ] = '.'
+
+        # Handle feature, score column.
+        self.feature_col = feature_col
+        if self.feature_col >= self.nfields:
+            raise MissingFieldError( "No field for feature_col (%d)" % feature_col )
+        self.feature = self.fields[ self.feature_col ]
+        self.score_col = score_col
+        if self.score_col >= self.nfields:
+            raise MissingFieldError( "No field for score_col (%d)" % score_col )
+        self.score = self.fields[ self.score_col ]
+
+        # GFF attributes.
+        self.attributes = parse_gff_attributes( fields[8] )
+
+    def copy( self ):
+        return GFFInterval(self.reader, list( self.fields ), self.chrom_col, self.feature_col, self.start_col,
+                           self.end_col, self.strand_col, self.score_col, self.strand)
+
+class GFFFeature( GFFInterval ):
+    """
+    A GFF feature, which can include multiple intervals.
+    """
+    def __init__( self, reader, chrom_col=0, feature_col=2, start_col=3, end_col=4, \
+                  strand_col=6, score_col=5, default_strand='.', fix_strand=False, intervals=[], \
+                  raw_size=0 ):
+        # Use copy so that first interval and feature do not share fields.
+        GFFInterval.__init__( self, reader, copy.deepcopy( intervals[0].fields ), chrom_col, feature_col, \
+                              start_col, end_col, strand_col, score_col, default_strand, \
+                              fix_strand=fix_strand )
+        self.intervals = intervals
+        self.raw_size = raw_size
+        # Use intervals to set feature attributes.
+        for interval in self.intervals:
+            # Error checking. NOTE: intervals need not share the same strand.
+            if interval.chrom != self.chrom:
+                raise ValueError( "interval chrom does not match self chrom: %s != %s" % \
+                                  ( interval.chrom, self.chrom ) )
+            # Set start, end of interval.
+            if interval.start < self.start:
+                self.start = interval.start
+            if interval.end > self.end:
+                self.end = interval.end
+
+    def name( self ):
+        """ Returns feature's name. """
+        name = None
+        # Preference for name: GTF, GFF3, GFF.
+        for attr_name in [
+                           # GTF:
+                           'gene_id', 'transcript_id',
+                           # GFF3:
+                           'ID', 'id',
+                           # GFF (TODO):
+                           'group' ]:
+            name = self.attributes.get( attr_name, None )
+            if name is not None:
+                break
+        return name
+
+    def copy( self ):
+        intervals_copy = []
+        for interval in self.intervals:
+            intervals_copy.append( interval.copy() )
+        return GFFFeature(self.reader, self.chrom_col, self.feature_col, self.start_col, self.end_col, self.strand_col,
+                          self.score_col, self.strand, intervals=intervals_copy )
+
+    def lines( self ):
+        lines = []
+        for interval in self.intervals:
+            lines.append( '\t'.join( interval.fields ) )
+        return lines
+
+
+class GFFIntervalToBEDReaderWrapper( NiceReaderWrapper ):
+    """
+    Reader wrapper that reads GFF intervals/lines and automatically converts
+    them to BED format.
+    """
+
+    def parse_row( self, line ):
+        # HACK: this should return a GFF interval, but bx-python operations
+        # require GenomicInterval objects and subclasses will not work.
+        interval = GenomicInterval( self, line.split( "\t" ), self.chrom_col, self.start_col, \
+                                    self.end_col, self.strand_col, self.default_strand, \
+                                    fix_strand=self.fix_strand )
+        interval = convert_gff_coords_to_bed( interval )
+        return interval
+
+class GFFReaderWrapper( NiceReaderWrapper ):
+    """
+    Reader wrapper for GFF files.
+
+    Wrapper has two major functions:
+
+    1. group entries for GFF file (via group column), GFF3 (via id attribute),
+       or GTF (via gene_id/transcript id);
+    2. convert coordinates from GFF format--starting and ending coordinates
+       are 1-based, closed--to the 'traditional'/BED interval format--0 based,
+       half-open. This is useful when using GFF files as inputs to tools that
+       expect traditional interval format.
+    """
+
+    def __init__( self, reader, chrom_col=0, feature_col=2, start_col=3, \
+                  end_col=4, strand_col=6, score_col=5, fix_strand=False, convert_to_bed_coord=False, **kwargs ):
+        NiceReaderWrapper.__init__( self, reader, chrom_col=chrom_col, start_col=start_col, end_col=end_col, \
+                                    strand_col=strand_col, fix_strand=fix_strand, **kwargs )
+        self.feature_col = feature_col
+        self.score_col = score_col
+        self.convert_to_bed_coord = convert_to_bed_coord
+        self.last_line = None
+        self.cur_offset = 0
+        self.seed_interval = None
+        self.seed_interval_line_len = 0
+
+    def parse_row( self, line ):
+        interval = GFFInterval( self, line.split( "\t" ), self.chrom_col, self.feature_col, \
+                                self.start_col, self.end_col, self.strand_col, self.score_col, \
+                                self.default_strand, fix_strand=self.fix_strand )
+        return interval
+
+    def next( self ):
+        """ Returns next GFFFeature. """
+
+        #
+        # Helper function.
+        #
+
+        def handle_parse_error( parse_error ):
+            """ Actions to take when ParseError found. """
+            if self.outstream:
+               if self.print_delegate and hasattr(self.print_delegate,"__call__"):
+                   self.print_delegate( self.outstream, e, self )
+            self.skipped += 1
+            # no reason to stuff an entire bad file into memmory
+            if self.skipped < 10:
+               self.skipped_lines.append( ( self.linenum, self.current_line, str( e ) ) )
+
+            # For debugging, uncomment this to propogate parsing exceptions up.
+            # I.e. the underlying reason for an unexpected StopIteration exception
+            # can be found by uncommenting this.
+            # raise e
+
+        #
+        # Get next GFFFeature
+        #
+        raw_size = self.seed_interval_line_len
+
+        # If there is no seed interval, set one. Also, if there are no more
+        # intervals to read, this is where iterator dies.
+        if not self.seed_interval:
+            while not self.seed_interval:
+                try:
+                    self.seed_interval = GenomicIntervalReader.next( self )
+                except ParseError, e:
+                    handle_parse_error( e )
+                # TODO: When no longer supporting python 2.4 use finally:
+                #finally:
+                raw_size += len( self.current_line )
+
+        # If header or comment, clear seed interval and return it with its size.
+        if isinstance( self.seed_interval, ( Header, Comment ) ):
+            return_val = self.seed_interval
+            return_val.raw_size = len( self.current_line )
+            self.seed_interval = None
+            self.seed_interval_line_len = 0
+            return return_val
+
+        # Initialize feature identifier from seed.
+        feature_group = self.seed_interval.attributes.get( 'group', None ) # For GFF
+        # For GFF3
+        feature_id = self.seed_interval.attributes.get( 'ID', None )
+        feature_parent_id = self.seed_interval.attributes.get( 'Parent', None )
+        # For GTF.
+        feature_gene_id = self.seed_interval.attributes.get( 'gene_id', None )
+        feature_transcript_id = self.seed_interval.attributes.get( 'transcript_id', None )
+
+        # Read all intervals associated with seed.
+        feature_intervals = []
+        feature_intervals.append( self.seed_interval )
+        while True:
+            try:
+                interval = GenomicIntervalReader.next( self )
+                raw_size += len( self.current_line )
+            except StopIteration, e:
+                # No more intervals to read, but last feature needs to be
+                # returned.
+                interval = None
+                raw_size += len( self.current_line )
+                break
+            except ParseError, e:
+                handle_parse_error( e )
+                raw_size += len( self.current_line )
+                continue
+            # TODO: When no longer supporting python 2.4 use finally:
+            #finally:
+            #raw_size += len( self.current_line )
+
+            # Ignore comments.
+            if isinstance( interval, Comment ):
+                continue
+
+            # Determine if interval is part of feature.
+            part_of = False
+            group = interval.attributes.get( 'group', None )
+            # GFF test:
+            if group and feature_group == group:
+                part_of = True
+            # GFF3 test:
+            parent_id = interval.attributes.get( 'Parent', None )
+            cur_id = interval.attributes.get( 'ID', None )
+            if ( cur_id and cur_id == feature_id ) or ( parent_id and parent_id == feature_id ):
+                part_of = True
+            # GTF test:
+            transcript_id = interval.attributes.get( 'transcript_id', None )
+            if transcript_id and transcript_id == feature_transcript_id:
+                part_of = True
+
+            # If interval is not part of feature, clean up and break.
+            if not part_of:
+                # Adjust raw size because current line is not part of feature.
+                raw_size -= len( self.current_line )
+                break
+
+            # Interval associated with feature.
+            feature_intervals.append( interval )
+
+        # Last interval read is the seed for the next interval.
+        self.seed_interval = interval
+        self.seed_interval_line_len = len( self.current_line )
+
+        # Return feature.
+        feature = GFFFeature( self, self.chrom_col, self.feature_col, self.start_col, \
+                              self.end_col, self.strand_col, self.score_col, \
+                              self.default_strand, fix_strand=self.fix_strand, \
+                              intervals=feature_intervals, raw_size=raw_size )
+
+        # Convert to BED coords?
+        if self.convert_to_bed_coord:
+            convert_gff_coords_to_bed( feature )
+
+        return feature
+
+def convert_bed_coords_to_gff( interval ):
+    """
+    Converts an interval object's coordinates from BED format to GFF format.
+    Accepted object types include GenomicInterval and list (where the first
+    element in the list is the interval's start, and the second element is
+    the interval's end).
+    """
+    if isinstance( interval, GenomicInterval ):
+        interval.start += 1
+        if isinstance( interval, GFFFeature ):
+            for subinterval in interval.intervals:
+                convert_bed_coords_to_gff( subinterval )
+    elif type ( interval ) is list:
+        interval[ 0 ] += 1
+    return interval
+
+def convert_gff_coords_to_bed( interval ):
+    """
+    Converts an interval object's coordinates from GFF format to BED format.
+    Accepted object types include GFFFeature, GenomicInterval, and list (where
+    the first element in the list is the interval's start, and the second
+    element is the interval's end).
+    """
+    if isinstance( interval, GenomicInterval ):
+        interval.start -= 1
+        if isinstance( interval, GFFFeature ):
+            for subinterval in interval.intervals:
+                convert_gff_coords_to_bed( subinterval )
+    elif type ( interval ) is list:
+        interval[ 0 ] -= 1
+    return interval
+
+def parse_gff_attributes( attr_str ):
+    """
+    Parses a GFF/GTF attribute string and returns a dictionary of name-value
+    pairs. The general format for a GFF3 attributes string is
+
+        name1=value1;name2=value2
+
+    The general format for a GTF attribute string is
+
+        name1 "value1" ; name2 "value2"
+
+    The general format for a GFF attribute string is a single string that
+    denotes the interval's group; in this case, method returns a dictionary
+    with a single key-value pair, and key name is 'group'
+    """
+    attributes_list = attr_str.split(";")
+    attributes = {}
+    for name_value_pair in attributes_list:
+        # Try splitting by '=' (GFF3) first because spaces are allowed in GFF3
+        # attribute; next, try double quotes for GTF.
+        pair = name_value_pair.strip().split("=")
+        if len( pair ) == 1:
+            pair = name_value_pair.strip().split("\"")
+        if len( pair ) == 1:
+            # Could not split for some reason -- raise exception?
+            continue
+        if pair == '':
+            continue
+        name = pair[0].strip()
+        if name == '':
+            continue
+        # Need to strip double quote from values
+        value = pair[1].strip(" \"")
+        attributes[ name ] = value
+
+    if len( attributes ) == 0:
+        # Could not split attributes string, so entire string must be
+        # 'group' attribute. This is the case for strictly GFF files.
+        attributes['group'] = attr_str
+    return attributes
+
+def gff_attributes_to_str( attrs, gff_format ):
+    """
+    Convert GFF attributes to string. Supported formats are GFF3, GTF.
+    """
+    if gff_format == 'GTF':
+        format_string = '%s "%s"'
+        # Convert group (GFF) and ID, parent (GFF3) attributes to transcript_id, gene_id
+        id_attr = None
+        if 'group' in attrs:
+            id_attr = 'group'
+        elif 'ID' in attrs:
+            id_attr = 'ID'
+        elif 'Parent' in attrs:
+            id_attr = 'Parent'
+        if id_attr:
+            attrs['transcript_id'] = attrs['gene_id'] = attrs[id_attr]
+    elif gff_format == 'GFF3':
+        format_string = '%s=%s'
+    attrs_strs = []
+    for name, value in attrs.items():
+        attrs_strs.append( format_string % ( name, value ) )
+    return " ; ".join( attrs_strs )
+
+def read_unordered_gtf( iterator, strict=False ):
+    """
+    Returns GTF features found in an iterator. GTF lines need not be ordered
+    or clustered for reader to work. Reader returns GFFFeature objects sorted
+    by transcript_id, chrom, and start position.
+    """
+
+    # -- Get function that generates line/feature key. --
+
+    get_transcript_id = lambda fields: parse_gff_attributes( fields[8] )[ 'transcript_id' ]
+    if strict:
+        # Strict GTF parsing uses transcript_id only to group lines into feature.
+        key_fn = get_transcript_id
+    else:
+        # Use lenient parsing where chromosome + transcript_id is the key. This allows
+        # transcripts with same ID on different chromosomes; this occurs in some popular
+        # datasources, such as RefGenes in UCSC.
+        key_fn = lambda fields: fields[0] + '_' + get_transcript_id( fields )
+
+
+    # Aggregate intervals by transcript_id and collect comments.
+    feature_intervals = odict()
+    comments = []
+    for count, line in enumerate( iterator ):
+        if line.startswith( '#' ):
+            comments.append( Comment( line ) )
+            continue
+
+        line_key = key_fn( line.split('\t') )
+        if line_key in feature_intervals:
+            feature = feature_intervals[ line_key ]
+        else:
+            feature = []
+            feature_intervals[ line_key ] = feature
+        feature.append( GFFInterval( None, line.split( '\t' ) ) )
+
+    # Create features.
+    chroms_features = {}
+    for count, intervals in enumerate( feature_intervals.values() ):
+        # Sort intervals by start position.
+        intervals.sort( lambda a,b: cmp( a.start, b.start ) )
+        feature = GFFFeature( None, intervals=intervals )
+        if feature.chrom not in chroms_features:
+            chroms_features[ feature.chrom ] = []
+        chroms_features[ feature.chrom ].append( feature )
+
+    # Sort features by chrom, start position.
+    chroms_features_sorted = []
+    for chrom_features in chroms_features.values():
+        chroms_features_sorted.append( chrom_features )
+    chroms_features_sorted.sort( lambda a,b: cmp( a[0].chrom, b[0].chrom ) )
+    for features in chroms_features_sorted:
+        features.sort( lambda a,b: cmp( a.start, b.start ) )
+
+    # Yield comments first, then features.
+    # FIXME: comments can appear anywhere in file, not just the beginning.
+    # Ideally, then comments would be associated with features and output
+    # just before feature/line.
+    for comment in comments:
+        yield comment
+
+    for chrom_features in chroms_features_sorted:
+        for feature in chrom_features:
+            yield feature
+
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/utils/odict.py	Tue Apr 01 10:52:51 2014 -0400
@@ -0,0 +1,85 @@
+"""
+Ordered dictionary implementation.
+"""
+
+from UserDict import UserDict
+
+class odict(UserDict):
+    """
+    http://aspn.activestate.com/ASPN/Cookbook/Python/Recipe/107747
+
+    This dictionary class extends UserDict to record the order in which items are
+    added. Calling keys(), values(), items(), etc. will return results in this
+    order.
+    """
+    def __init__( self, dict = None ):
+        self._keys = []
+        UserDict.__init__( self, dict )
+
+    def __delitem__( self, key ):
+        UserDict.__delitem__( self, key )
+        self._keys.remove( key )
+
+    def __setitem__( self, key, item ):
+        UserDict.__setitem__( self, key, item )
+        if key not in self._keys:
+            self._keys.append( key )
+
+    def clear( self ):
+        UserDict.clear( self )
+        self._keys = []
+
+    def copy(self):
+        new = odict()
+        new.update( self )
+        return new
+
+    def items( self ):
+        return zip( self._keys, self.values() )
+
+    def keys( self ):
+        return self._keys[:]
+
+    def popitem( self ):
+        try:
+            key = self._keys[-1]
+        except IndexError:
+            raise KeyError( 'dictionary is empty' )
+        val = self[ key ]
+        del self[ key ]
+        return ( key, val )
+
+    def setdefault( self, key, failobj=None ):
+        if key not in self._keys:
+            self._keys.append( key )
+        return UserDict.setdefault( self, key, failobj )
+
+    def update( self, dict ):
+        for ( key, val ) in dict.items():
+            self.__setitem__( key, val )
+
+    def values( self ):
+        return map( self.get, self._keys )
+
+    def iterkeys( self ):
+        return iter( self._keys )
+
+    def itervalues( self ):
+        for key in self._keys:
+            yield self.get( key )
+
+    def iteritems( self ):
+        for key in self._keys:
+            yield key, self.get( key )
+
+    def __iter__( self ):
+        for key in self._keys:
+            yield key
+
+    def reverse( self ):
+        self._keys.reverse()
+
+    def insert( self, index, key, item ):
+        if key not in self._keys:
+            self._keys.insert( index, key )
+            UserDict.__setitem__( self, key, item )