Mercurial > repos > devteam > trimmer

changeset 1:e632b6c79f7b

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Added quotes and brackets to appropriate command arguments
author greg <greg@bx.psu.edu>
date Mon, 01 Apr 2013 14:08:19 -0400
parents f862a6e4d096
children 3983fbf107b6
files trimmer.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/trimmer.xml	Tue Dec 04 11:10:05 2012 -0500
+++ b/trimmer.xml	Mon Apr 01 14:08:19 2013 -0400
@@ -1,7 +1,7 @@
 <tool id="trimmer" name="Trim" version="0.0.1">
     <description>leading or trailing characters</description>
     <command interpreter="python">
-    trimmer.py -a -f $input1 -c $col -s $start -e $end -i $ignore $fastq > $out_file1
+    trimmer.py -a -f "${input1}" -c "${col}" -s "${start}" -e "${end}" -i "${ignore}" "${fastq}" > "${out_file1}"
     </command>
     <inputs>
         <param format="tabular,txt" name="input1" type="data" label="this dataset"/>