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comparison test-data/gatk/gatk_unified_genotyper/gatk_unified_genotyper_out_1.log.contains @ 0:66dd4d4c1743 draft default tip

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Imported from capsule None
author devteam
date Tue, 01 Apr 2014 10:49:12 -0400
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-1:000000000000 0:66dd4d4c1743
1 Program Args: -T UnifiedGenotyper
2 GenomeAnalysisEngine - Strictness is SILENT
3 TraversalEngine - [INITIALIZATION COMPLETE; TRAVERSAL STARTING]
4 TraversalEngine - Location processed.sites runtime per.1M.sites completed total.runtime remaining
5 UnifiedGenotyper - Visited bases 5387
6 UnifiedGenotyper - Callable bases 5344
7 UnifiedGenotyper - Confidently called bases 5344
8 UnifiedGenotyper - % callable bases of all loci 99.202
9 UnifiedGenotyper - % confidently called bases of all loci 99.202
10 UnifiedGenotyper - % confidently called bases of callable loci 100.000
11 UnifiedGenotyper - Actual calls made 1
12 TraversalEngine - Total runtime