Mercurial > repos > devteam > unified_genotyper

view test-data/gatk/gatk_unified_genotyper/gatk_unified_genotyper_out_1.log.contains @ 0:66dd4d4c1743 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Imported from capsule None
author devteam
date Tue, 01 Apr 2014 10:49:12 -0400
parents
children
line wrap: on
line source

Program Args: -T UnifiedGenotyper
GenomeAnalysisEngine - Strictness is SILENT
TraversalEngine - [INITIALIZATION COMPLETE; TRAVERSAL STARTING]
TraversalEngine -        Location processed.sites  runtime per.1M.sites completed total.runtime remaining
UnifiedGenotyper - Visited bases                                5387
UnifiedGenotyper - Callable bases                               5344
UnifiedGenotyper - Confidently called bases                     5344
UnifiedGenotyper - % callable bases of all loci                 99.202
UnifiedGenotyper - % confidently called bases of all loci       99.202
UnifiedGenotyper - % confidently called bases of callable loci  100.000
UnifiedGenotyper - Actual calls made                            1
TraversalEngine - Total runtime