annotate tool-data/gatk_annotations.txt.sample @ 0:ae9d0a543e9b draft default tip

Imported from capsule None
author devteam
date Tue, 01 Apr 2014 10:48:59 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
ae9d0a543e9b Imported from capsule None
devteam
parents:
diff changeset
1 #unique_id name gatk_value tools_valid_for
ae9d0a543e9b Imported from capsule None
devteam
parents:
diff changeset
2 AlleleBalance AlleleBalance AlleleBalance UnifiedGenotyper,VariantAnnotator,VariantRecalibrator
ae9d0a543e9b Imported from capsule None
devteam
parents:
diff changeset
3 AlleleBalanceBySample AlleleBalanceBySample AlleleBalanceBySample UnifiedGenotyper,VariantAnnotator,VariantRecalibrator
ae9d0a543e9b Imported from capsule None
devteam
parents:
diff changeset
4 BaseCounts BaseCounts BaseCounts UnifiedGenotyper,VariantAnnotator,VariantRecalibrator
ae9d0a543e9b Imported from capsule None
devteam
parents:
diff changeset
5 BaseQualityRankSumTest BaseQualityRankSumTest BaseQualityRankSumTest UnifiedGenotyper,VariantAnnotator,VariantRecalibrator
ae9d0a543e9b Imported from capsule None
devteam
parents:
diff changeset
6 ChromosomeCounts ChromosomeCounts ChromosomeCounts UnifiedGenotyper,VariantAnnotator,VariantRecalibrator
ae9d0a543e9b Imported from capsule None
devteam
parents:
diff changeset
7 DepthOfCoverage DepthOfCoverage DepthOfCoverage UnifiedGenotyper,VariantAnnotator,VariantRecalibrator
ae9d0a543e9b Imported from capsule None
devteam
parents:
diff changeset
8 DepthPerAlleleBySample DepthPerAlleleBySample DepthPerAlleleBySample UnifiedGenotyper,VariantAnnotator,VariantRecalibrator
ae9d0a543e9b Imported from capsule None
devteam
parents:
diff changeset
9 FisherStrand FisherStrand FisherStrand UnifiedGenotyper,VariantAnnotator,VariantRecalibrator
ae9d0a543e9b Imported from capsule None
devteam
parents:
diff changeset
10 GCContent GCContent GCContent UnifiedGenotyper,VariantAnnotator,VariantRecalibrator
ae9d0a543e9b Imported from capsule None
devteam
parents:
diff changeset
11 HaplotypeScore HaplotypeScore HaplotypeScore UnifiedGenotyper,VariantAnnotator,VariantRecalibrator
ae9d0a543e9b Imported from capsule None
devteam
parents:
diff changeset
12 HardyWeinberg HardyWeinberg HardyWeinberg UnifiedGenotyper,VariantAnnotator,VariantRecalibrator
ae9d0a543e9b Imported from capsule None
devteam
parents:
diff changeset
13 HomopolymerRun HomopolymerRun HomopolymerRun UnifiedGenotyper,VariantAnnotator,VariantRecalibrator
ae9d0a543e9b Imported from capsule None
devteam
parents:
diff changeset
14 InbreedingCoeff InbreedingCoeff InbreedingCoeff UnifiedGenotyper,VariantAnnotator,VariantRecalibrator
ae9d0a543e9b Imported from capsule None
devteam
parents:
diff changeset
15 IndelType IndelType IndelType UnifiedGenotyper,VariantAnnotator,VariantRecalibrator
ae9d0a543e9b Imported from capsule None
devteam
parents:
diff changeset
16 LowMQ LowMQ LowMQ UnifiedGenotyper,VariantAnnotator,VariantRecalibrator
ae9d0a543e9b Imported from capsule None
devteam
parents:
diff changeset
17 MVLikelihoodRatio MVLikelihoodRatio MVLikelihoodRatio UnifiedGenotyper,VariantAnnotator,VariantRecalibrator
ae9d0a543e9b Imported from capsule None
devteam
parents:
diff changeset
18 MappingQualityRankSumTest MappingQualityRankSumTest MappingQualityRankSumTest UnifiedGenotyper,VariantAnnotator,VariantRecalibrator
ae9d0a543e9b Imported from capsule None
devteam
parents:
diff changeset
19 MappingQualityZero MappingQualityZero MappingQualityZero UnifiedGenotyper,VariantAnnotator,VariantRecalibrator
ae9d0a543e9b Imported from capsule None
devteam
parents:
diff changeset
20 MappingQualityZeroBySample MappingQualityZeroBySample MappingQualityZeroBySample UnifiedGenotyper,VariantAnnotator,VariantRecalibrator
ae9d0a543e9b Imported from capsule None
devteam
parents:
diff changeset
21 MappingQualityZeroFraction MappingQualityZeroFraction MappingQualityZeroFraction UnifiedGenotyper,VariantAnnotator,VariantRecalibrator
ae9d0a543e9b Imported from capsule None
devteam
parents:
diff changeset
22 NBaseCount NBaseCount NBaseCount UnifiedGenotyper,VariantAnnotator,VariantRecalibrator
ae9d0a543e9b Imported from capsule None
devteam
parents:
diff changeset
23 QualByDepth QualByDepth QualByDepth UnifiedGenotyper,VariantAnnotator,VariantRecalibrator
ae9d0a543e9b Imported from capsule None
devteam
parents:
diff changeset
24 RMSMappingQuality RMSMappingQuality RMSMappingQuality UnifiedGenotyper,VariantAnnotator,VariantRecalibrator
ae9d0a543e9b Imported from capsule None
devteam
parents:
diff changeset
25 ReadDepthAndAllelicFractionBySample ReadDepthAndAllelicFractionBySample ReadDepthAndAllelicFractionBySample UnifiedGenotyper,VariantAnnotator,VariantRecalibrator
ae9d0a543e9b Imported from capsule None
devteam
parents:
diff changeset
26 ReadPosRankSumTest ReadPosRankSumTest ReadPosRankSumTest UnifiedGenotyper,VariantAnnotator,VariantRecalibrator
ae9d0a543e9b Imported from capsule None
devteam
parents:
diff changeset
27 SampleList SampleList SampleList UnifiedGenotyper,VariantAnnotator,VariantRecalibrator
ae9d0a543e9b Imported from capsule None
devteam
parents:
diff changeset
28 SnpEff SnpEff SnpEff VariantAnnotator,VariantRecalibrator
ae9d0a543e9b Imported from capsule None
devteam
parents:
diff changeset
29 SpanningDeletions SpanningDeletions SpanningDeletions UnifiedGenotyper,VariantAnnotator,VariantRecalibrator
ae9d0a543e9b Imported from capsule None
devteam
parents:
diff changeset
30 TechnologyComposition TechnologyComposition TechnologyComposition UnifiedGenotyper,VariantAnnotator,VariantRecalibrator