changeset 1:227aa321a671 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gatk/variant_select commit a1517c9d22029095120643bbe2c8fa53754dd2b7

--- a/tool_dependencies.xml	Tue Apr 01 10:49:48 2014 -0400
+++ b/tool_dependencies.xml	Wed Nov 11 12:46:41 2015 -0500
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
   <package name="gatk" version="1.4">
-      <repository changeset_revision="ec95ec570854" name="package_gatk_1_4" owner="devteam" prior_installation_required="False" toolshed="http://toolshed.g2.bx.psu.edu" />
+      <repository changeset_revision="ec95ec570854" name="package_gatk_1_4" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>

--- a/variant_select.xml	Tue Apr 01 10:49:48 2014 -0400
+++ b/variant_select.xml	Wed Nov 11 12:46:41 2015 -0500
@@ -1,4 +1,4 @@
-<tool id="gatk_variant_select" name="Select Variants" version="0.0.2">
+<tool id="gatk_variant_select" name="Select Variants" version="0.0.3">
   <description>from VCF files</description>
   <requirements>
       <requirement type="package" version="1.4">gatk</requirement>
@@ -154,7 +154,7 @@
             <param name="sample_file" type="data" format="txt" label="File containing a list of samples (one per line) to include" />
         </repeat>
         
-        <param name="input_keep_ids" type="data" format="text" label="Only emit sites whose ID is found in this file" optional="True" help="-IDs,--keepIDs &amp;lt;keepIDs&amp;gt;"/>
+        <param name="input_keep_ids" type="data" format="txt" label="Only emit sites whose ID is found in this file" optional="True" help="-IDs,--keepIDs &amp;lt;keepIDs&amp;gt;"/>
         
         <param name="keep_original_AC" type="boolean" truevalue="--keepOriginalAC" falsevalue="" label="Don't update the AC, AF, or AN values in the INFO field after selecting" help="-keepOriginalAC,--keepOriginalAC" />