diff vcfaddinfo.xml @ 0:4d4b16af67aa draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/vcfaddinfo.xml	Thu Mar 19 12:21:38 2015 -0400
@@ -0,0 +1,32 @@
+<tool id="vcfaddinfo" name="VCFaddinfo:" version="0.0.3">
+  <description>Adds info fields from the second dataset which are not present in the first dataset</description>
+  <macros>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="requirements"></expand>
+  <expand macro="stdio" />
+  <command>vcfaddinfo "${input1}" "${input2}" > "${out_file1}"</command>
+  <inputs>
+    <param format="vcf" name="input1" type="data" label="Add INFO fields to" help="First VCF dataset"/>
+    <param format="vcf" name="input2" type="data" label="using INFO fields from" help="Second VCF dataset"/>
+  </inputs>
+  <outputs>
+    <data format="vcf" name="out_file1" />
+  </outputs>
+ <tests>
+    <test>
+      <param name="input1" value="vcfaddinfo-input1.vcf"/>
+      <param name="input2" value="vcflib.vcf"/>
+      <output name="out_file1" file="vcfaddinfo-test1.vcf" />
+    </test>
+    </tests>
+<help>
+
+Adds info fields from the second dataset which are not present in the first dataset.
+
+-----
+
+Vcfaddinfo @IS_PART_OF_VCFLIB@
+</help>
+  <expand macro="citations" />
+</tool>