view vcfaddinfo.xml @ 0:4d4b16af67aa draft

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<tool id="vcfaddinfo" name="VCFaddinfo:" version="0.0.3">
  <description>Adds info fields from the second dataset which are not present in the first dataset</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements"></expand>
  <expand macro="stdio" />
  <command>vcfaddinfo "${input1}" "${input2}" > "${out_file1}"</command>
  <inputs>
    <param format="vcf" name="input1" type="data" label="Add INFO fields to" help="First VCF dataset"/>
    <param format="vcf" name="input2" type="data" label="using INFO fields from" help="Second VCF dataset"/>
  </inputs>
  <outputs>
    <data format="vcf" name="out_file1" />
  </outputs>
 <tests>
    <test>
      <param name="input1" value="vcfaddinfo-input1.vcf"/>
      <param name="input2" value="vcflib.vcf"/>
      <output name="out_file1" file="vcfaddinfo-test1.vcf" />
    </test>
    </tests>
<help>

Adds info fields from the second dataset which are not present in the first dataset.

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Vcfaddinfo @IS_PART_OF_VCFLIB@
</help>
  <expand macro="citations" />
</tool>