|
0
|
1 ##fileformat=VCFv4.1
|
|
|
2 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT panc1_ng
|
|
|
3 chr1 2985885 . C G . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:70:64:48:16:25%:9.8E-1:34:20:0:48:0:16
|
|
|
4 chr1 3301721 . C T . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:687:619:205:414:66.77%:9.8E-1:35:24:130:75:279:135
|
|
|
5 chr1 3328358 . T C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:314:278:0:278:100%:9.8E-1:0:25:0:0:131:147
|
|
|
6 chr1 3328659 . C T . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:417:362:294:68:18.78%:9.8E-1:35:19:110:184:35:33
|
|
|
7 chr1 3329384 . C T . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:161:147:119:28:19.05%:9.8E-1:33:26:32:87:6:22
|
|
|
8 chr1 3350409 . G A . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:567:471:157:314:66.67%:9.8E-1:33:25:75:82:180:134
|
|
|
9 chr1 3352161 . T TA . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:511:467:362:105:22.29%:9.8E-1:34:33:167:195:59:46
|
|
|
10 chr1 3352227 . T C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:645:447:1:446:99.78%:9.8E-1:26:32:0:1:256:190
|
|
|
11 chr1 3352347 . T C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:517:427:0:427:100%:9.8E-1:0:34:0:0:126:301
|
|
|
12 chr1 3352503 . G C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:449:304:0:303:100%:9.8E-1:0:19:0:0:170:133
|
|
|
13 chr1 3352541 . T C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:466:401:0:401:100%:9.8E-1:0:25:0:0:189:212
|
|
|
14 chr1 3352579 . T C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:533:482:0:482:100%:9.8E-1:0:24:0:0:231:251
|
|
|
15 chr1 3352763 . CT C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:437:369:248:112:29.32%:9.8E-1:33:31:143:105:62:50
|
|
|
16 chr1 3352784 . A G . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:443:357:253:104:29.05%:9.8E-1:30:25:160:93:54:50
|
|
|
17 chr1 3352872 . A C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:590:471:333:138:29.3%:9.8E-1:33:22:247:86:104:34
|
|
|
18 chr1 3353890 . A G . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:478:430:0:429:99.77%:9.8E-1:0:34:0:0:242:187
|
|
|
19 chr1 3353949 . A G . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:690:621:0:620:99.84%:9.8E-1:0:22:0:0:421:199
|
|
|
20 chr1 3354595 . T C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:519:461:3:458:99.35%:9.8E-1:30:19:0:3:197:261
|
|
|
21 chr1 3354615 . T C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:495:459:0:459:100%:9.8E-1:0:19:0:0:220:239
|
|
|
22 chr1 18960722 . G C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:701:648:489:159:24.54%:9.8E-1:34:22:346:143:121:38
|
|
|
23 chr1 19071752 . T C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:770:715:219:495:69.23%:9.8E-1:35:21:86:133:184:311
|
|
|
24 chr1 19071865 . T C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:517:479:174:305:63.54%:9.8E-1:35:34:42:132:91:214
|
|
|
25 chr1 19072808 . G A . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:706:657:228:429:65.3%:9.8E-1:36:19:99:129:197:232
|
|
|
26 chr1 19072926 . A G . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:673:618:183:435:70.39%:9.8E-1:35:24:96:87:187:248
|
|
|
27 chr1 19074980 . C T . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:720:676:221:454:67.06%:9.8E-1:35:35:89:132:226:228
|
|
|
28 chr1 19075225 . A G . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:718:660:190:468:70.91%:9.8E-1:34:34:93:97:231:237
|
|
|
29 chr1 19075327 . C A . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:623:588:178:410:69.73%:9.8E-1:36:36:63:115:142:268
|
|
|
30 chr1 36752152 . C T . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:845:780:216:564:72.31%:9.8E-1:36:25:103:113:249:315
|
|
|
31 chr1 36759426 . A G . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:504:465:152:309:66.45%:9.8E-1:36:36:111:41:250:59
|
|
|
32 chr1 36762396 . C T . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:468:377:0:377:100%:9.8E-1:0:19:0:0:127:250
|
|
|
33 chr1 36770605 . CTT C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:390:310:229:76:23.6%:9.8E-1:29:29:128:101:41:35
|
|
|
34 chr1 40361783 . G C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:533:505:33:471:93.27%:9.8E-1:35:24:9:24:206:265
|
|
|
35 chr1 40363054 . G C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:677:646:468:178:27.55%:9.8E-1:36:35:193:275:82:96
|
|
|
36 chr1 43812075 . G A . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:692:639:16:621:97.18%:9.8E-1:33:20:10:6:343:278
|
|
|
37 chr1 43814864 . T C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:182:150:8:142:94.67%:9.8E-1:27:32:8:0:141:1
|
|
|
38 chr1 45796269 . G C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:571:534:0:534:100%:9.8E-1:0:24:0:0:111:423
|
|
|
39 chr1 45798555 . T C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:754:685:0:685:100%:9.8E-1:0:24:0:0:366:319
|
|
|
40 chr1 45805566 . G C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:327:276:0:276:100%:9.8E-1:0:20:0:0:127:149
|
|
|
41 chr1 47682017 . T G . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:555:470:10:460:97.87%:9.8E-1:35:34:7:3:286:174
|
|
|
42 chr1 47683201 . C T . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:708:660:195:465:70.45%:9.8E-1:35:24:83:112:218:247
|
|
|
43 chr1 47684677 . T G . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:691:636:27:609:95.75%:9.8E-1:36:20:17:10:319:290
|
|
|
44 chr1 47685455 . T C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:407:343:0:343:99.71%:9.8E-1:0:23:0:0:46:297
|
|
|
45 chr1 47691568 . GCAGA G . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:40:35:15:21:56.76%:9.8E-1:33:29:7:8:7:14
|
|
|
46 chr1 47717189 . A G . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:714:667:201:464:69.57%:9.8E-1:36:21:115:86:242:222
|
|
|
47 chr1 47726087 . T C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:625:603:468:135:22.39%:9.8E-1:36:35:264:204:65:70
|
|
|
48 chr1 47735280 . T C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:414:381:98:283:74.28%:9.8E-1:35:36:74:24:225:58
|
|
|
49 chr1 47767914 . G A . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:560:533:377:156:29.27%:9.8E-1:35:34:222:155:91:65
|
|
|
50 chr1 51433821 . G GC . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:454:407:44:394:89.34%:9.8E-1:33:32:12:32:88:306
|
|
|
51 chr1 51433863 . G GC . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:373:318:23:317:92.96%:9.8E-1:33:31:3:20:70:247
|
|
|
52 chr1 51433888 . A AG . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:343:284:34:287:87.77%:9.8E-1:33:29:3:31:85:202
|
|
|
53 chr1 51822188 . GA G . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:406:277:226:29:10.25%:9.8E-1:34:30:164:62:18:11
|
|
|
54 chr1 51873951 . G A . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:773:740:521:219:29.59%:9.8E-1:37:37:189:332:88:131
|
|
|
55 chr1 59248813 . G C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:463:412:0:412:100%:9.8E-1:0:33:0:0:80:332
|
|
|
56 chr1 59249031 . T G . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:284:249:0:249:100%:9.8E-1:0:22:0:0:103:146
|
|
|
57 chr1 59249347 . G C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:320:278:1:276:99.28%:9.8E-1:33:25:0:1:153:123
|
|
|
58 chr1 65299551 . G GAATT . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:579:557:435:122:21.75%:9.8E-1:36:36:183:252:47:75
|
|
|
59 chr1 65301238 . A G . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:408:386:130:256:66.32%:9.8E-1:37:35:23:107:41:215
|
|
|
60 chr1 65310489 . T C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:754:714:553:161:22.55%:9.8E-1:35:35:287:266:98:63
|
|
|
61 chr1 65311214 . G C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:788:738:275:463:62.74%:9.8E-1:35:24:129:146:236:227
|
|
|
62 chr1 65321250 . G A . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:808:739:283:456:61.71%:9.8E-1:34:20:140:143:236:220
|
|
|
63 chr1 65321388 . G A . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:542:506:30:476:94.07%:9.8E-1:36:20:4:26:142:334
|
|
|
64 chr1 65321419 . G A . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:471:426:131:294:69.01%:9.8E-1:35:19:27:104:51:243
|
|
|
65 chr1 65325970 . C T . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:491:457:40:417:91.25%:9.8E-1:35:36:8:32:82:335
|
|
|
66 chr1 65330682 . G A . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:482:448:141:307:68.53%:9.8E-1:35:21:21:120:41:266
|
|
|
67 chr1 65335095 . T C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:1022:957:364:593:61.96%:9.8E-1:35:21:147:217:251:342
|
|
|
68 chr1 85732065 . A G . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:319:295:6:289:97.97%:9.8E-1:37:36:5:1:206:83
|
|
|
69 chr1 85732133 . G A . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:434:405:124:281:69.21%:9.8E-1:36:24:82:42:200:81
|
|
|
70 chr1 85732941 . A C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:479:423:9:414:97.64%:9.8E-1:37:35:2:7:127:287
|
|
|
71 chr1 85741921 . G C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:239:218:10:208:95.41%:9.8E-1:34:25:8:2:172:36
|
|
|
72 chr1 85742012 . G C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:484:437:302:135:30.89%:9.8E-1:35:34:175:127:70:65
|
|
|
73 chr1 85742338 . G C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:260:216:6:210:97.22%:9.8E-1:30:23:1:5:52:158
|
|
|
74 chr1 110882444 . A G . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:247:223:76:147:65.92%:9.8E-1:32:25:39:37:80:67
|
|
|
75 chr1 110883569 . A T . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:635:585:186:399:68.21%:9.8E-1:34:34:100:86:196:203
|
|
|
76 chr1 114936079 . T A . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:375:318:257:61:19.18%:9.8E-1:36:17:108:149:38:23
|
