Mercurial > repos > devteam > vcfvcfintersect

changeset 4:6f6bf10618d7 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfvcfintersect commit c2af291b241e37e0a55adbc1fc72a9fa37d93582
author iuc
date Mon, 26 Mar 2018 12:29:13 -0400
parents 1bc1b2b8b341
children 166c4f50525f
files vcfvcfintersect.xml
diffstat 1 files changed, 13 insertions(+), 12 deletions(-) [+]
line wrap: on
line diff
--- a/vcfvcfintersect.xml	Thu Sep 15 16:07:36 2016 -0400
+++ b/vcfvcfintersect.xml	Mon Mar 26 12:29:13 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="vcfvcfintersect" name="VCF-VCFintersect:" version="@WRAPPER_VERSION@.0">
+<tool id="vcfvcfintersect" name="VCF-VCFintersect:" version="@WRAPPER_VERSION@+galaxy0">
     <description>Intersect two VCF datasets</description>
     <macros>
         <import>macros.xml</import>
@@ -60,15 +60,16 @@
             <when value="use_adv_controls">
                 <param name="adv_options_input" type="text" value="-t &quot;vcfvcf-intersect-result&quot;"
                     label="Enter additional command line options described in the help section below"
-                    help="such as -m, -t, -V, -M, and -T" />
-                <sanitizer>
-                    <valid initial="string.printable">
-                        <remove value="&apos;"/>
-                    </valid>
-                    <mapping initial="none">
-                        <add source="&apos;" target="__sq__"/>
-                    </mapping>
-                </sanitizer>
+                    help="such as -m, -t, -V, -M, and -T">
+                    <sanitizer>
+                        <valid initial="string.printable">
+                            <remove value="&apos;"/>
+                        </valid>
+                        <mapping initial="none">
+                            <add source="&apos;" target="__sq__"/>
+                        </mapping>
+                    </sanitizer>
+                </param>
             </when>
         </conditional>
     </inputs>
@@ -84,7 +85,7 @@
             <param name="isect_union" value="-i" />
             <param name="invert" value="False" />
             <param name="loci" value="False" />
-            <patam name="adv_options_selector" value="no" />
+            <param name="adv_options_selector" value="no" />
             <param name="window_size" value="30" />
             <output name="out_file1" file="vcfvcfintersect-test1.vcf"/>
         </test>
@@ -95,7 +96,7 @@
             <param name="isect_union" value="-u" />
             <param name="invert" value="False" />
             <param name="loci" value="False" />
-            <patam name="adv_options_selector" value="no" />
+            <param name="adv_options_selector" value="no" />
             <param name="window_size" value="30" />
             <param name="ref_file" value="vcflib-test-genome-phix.fa" />
             <output name="out_file1" file="vcfvcfintersect-test2.vcf"/>