Mercurial > repos > dfornika > data_manager_build_kraken2_database
comparison data_manager_conf.xml @ 17:4c9f9d6098eb draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit db9eb9472b9f6caea6a0755697ee8d3a93e85b5b-dirty
author | dfornika |
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date | Mon, 06 May 2019 19:42:14 -0400 |
parents | 039a65ff445d |
children | f005b6efd096 |
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16:d9f190088154 | 17:4c9f9d6098eb |
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1 <data_managers> | 1 <data_managers> |
2 <data_manager tool_file="data_manager/kraken2_build_standard.xml" id="kraken2_build_standard" version="1.0"> | 2 <data_manager tool_file="data_manager/kraken2_build_database.xml" id="kraken2_build_database" version="1.0"> |
3 <data_table name="kraken2_databases"> | 3 <data_table name="kraken2_databases"> |
4 <output> | 4 <output> |
5 <column name="value"/> | 5 <column name="value"/> |
6 <column name="name"/> | 6 <column name="name"/> |
7 <column name="path" output_ref="out_file"> | 7 <column name="path" output_ref="out_file"> |
13 <value_translation type="function">abspath</value_translation> | 13 <value_translation type="function">abspath</value_translation> |
14 </column> | 14 </column> |
15 </output> | 15 </output> |
16 </data_table> | 16 </data_table> |
17 </data_manager> | 17 </data_manager> |
18 <data_manager tool_file="data_manager/kraken2_build_custom.xml" id="kraken2_build_custom" version="1.0"> | |
19 <data_table name="kraken2_databases"> | |
20 <output> | |
21 <column name="value"/> | |
22 <column name="name"/> | |
23 <column name="path" output_ref="out_file"> | |
24 <move type="directory"> | |
25 <source>${path}</source> | |
26 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target> | |
27 </move> | |
28 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation> | |
29 <value_translation type="function">abspath</value_translation> | |
30 </column> | |
31 </output> | |
32 </data_table> | |
33 </data_manager> | |
34 <data_manager tool_file="data_manager/kraken2_build_special.xml" id="kraken2_build_special" version="1.0"> | |
35 <data_table name="kraken2_databases"> | |
36 <output> | |
37 <column name="value"/> | |
38 <column name="name"/> | |
39 <column name="path" output_ref="out_file"> | |
40 <move type="directory"> | |
41 <source>${path}</source> | |
42 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target> | |
43 </move> | |
44 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation> | |
45 <value_translation type="function">abspath</value_translation> | |
46 </column> | |
47 </output> | |
48 </data_table> | |
49 </data_manager> | |
50 <data_manager tool_file="data_manager/kraken2_build_minikraken.xml" id="kraken2_build_minikraken" version="1.0"> | |
51 <data_table name="kraken2_databases"> | |
52 <output> | |
53 <column name="value"/> | |
54 <column name="name"/> | |
55 <column name="path" output_ref="out_file"> | |
56 <move type="directory"> | |
57 <source>${path}</source> | |
58 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target> | |
59 </move> | |
60 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation> | |
61 <value_translation type="function">abspath</value_translation> | |
62 </column> | |
63 </output> | |
64 </data_table> | |
65 </data_manager> | |
66 </data_managers> | 18 </data_managers> |