Mercurial > repos > dfornika > data_manager_build_kraken2_database
diff data_manager_conf.xml @ 17:4c9f9d6098eb draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit db9eb9472b9f6caea6a0755697ee8d3a93e85b5b-dirty
| author | dfornika |
|---|---|
| date | Mon, 06 May 2019 19:42:14 -0400 |
| parents | 039a65ff445d |
| children | f005b6efd096 |
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--- a/data_manager_conf.xml Tue Mar 05 16:45:43 2019 -0500 +++ b/data_manager_conf.xml Mon May 06 19:42:14 2019 -0400 @@ -1,5 +1,5 @@ <data_managers> - <data_manager tool_file="data_manager/kraken2_build_standard.xml" id="kraken2_build_standard" version="1.0"> + <data_manager tool_file="data_manager/kraken2_build_database.xml" id="kraken2_build_database" version="1.0"> <data_table name="kraken2_databases"> <output> <column name="value"/> @@ -15,52 +15,4 @@ </output> </data_table> </data_manager> - <data_manager tool_file="data_manager/kraken2_build_custom.xml" id="kraken2_build_custom" version="1.0"> - <data_table name="kraken2_databases"> - <output> - <column name="value"/> - <column name="name"/> - <column name="path" output_ref="out_file"> - <move type="directory"> - <source>${path}</source> - <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target> - </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation> - <value_translation type="function">abspath</value_translation> - </column> - </output> - </data_table> - </data_manager> - <data_manager tool_file="data_manager/kraken2_build_special.xml" id="kraken2_build_special" version="1.0"> - <data_table name="kraken2_databases"> - <output> - <column name="value"/> - <column name="name"/> - <column name="path" output_ref="out_file"> - <move type="directory"> - <source>${path}</source> - <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target> - </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation> - <value_translation type="function">abspath</value_translation> - </column> - </output> - </data_table> - </data_manager> - <data_manager tool_file="data_manager/kraken2_build_minikraken.xml" id="kraken2_build_minikraken" version="1.0"> - <data_table name="kraken2_databases"> - <output> - <column name="value"/> - <column name="name"/> - <column name="path" output_ref="out_file"> - <move type="directory"> - <source>${path}</source> - <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target> - </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation> - <value_translation type="function">abspath</value_translation> - </column> - </output> - </data_table> - </data_manager> </data_managers>