Mercurial > repos > dfornika > data_manager_build_kraken2_database
diff data_manager_conf.xml @ 5:1f6fe9dc5490 draft
planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 47bcc8467200adee842a5574b67bc6ef46c0be71-dirty
| author | dfornika |
|---|---|
| date | Mon, 04 Mar 2019 18:59:44 -0500 |
| parents | b03007bc0f05 |
| children | ae6180bdb1e9 |
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--- a/data_manager_conf.xml Fri Mar 01 14:01:57 2019 -0500 +++ b/data_manager_conf.xml Mon Mar 04 18:59:44 2019 -0500 @@ -1,34 +1,4 @@ <data_managers> - <data_manager tool_file="data_manager/kraken2_custom_database_builder.xml" id="kraken2_custom_database_builder" version="1.0"> - <data_table name="kraken2_databases"> - <output> - <column name="value"/> - <column name="name"/> - <column name="path" output_ref="out_file"> - <move type="directory" relativize_symlinks="True"> - <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_database/${value}</target> - </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_database/${value}</value_translation> - <value_translation type="function">abspath</value_translation> - </column> - </output> - </data_table> - </data_manager> - <data_manager tool_file="data_manager/kraken2_standard_database_builder.xml" id="kraken2_standard_database_builder" version="1.0"> - <data_table name="kraken2_databases"> - <output> - <column name="value"/> - <column name="name"/> - <column name="path" output_ref="out_file"> - <move type="directory" relativize_symlinks="True"> - <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_database/${value}</target> - </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_database/${value}</value_translation> - <value_translation type="function">abspath</value_translation> - </column> - </output> - </data_table> - </data_manager> <data_manager tool_file="data_manager/kraken2_build_standard.xml" id="kraken2_build_standard" version="1.0"> <data_table name="kraken2_databases"> <output> @@ -36,9 +6,9 @@ <column name="name"/> <column name="path" output_ref="out_file"> <move type="directory" relativize_symlinks="True"> - <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_database/${value}</target> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases</target> </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_database/${value}</value_translation> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> @@ -51,9 +21,9 @@ <column name="name"/> <column name="path" output_ref="out_file"> <move type="directory" relativize_symlinks="True"> - <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_database/${value}</target> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases</target> </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_database/${value}</value_translation> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases</value_translation> <value_translation type="function">abspath</value_translation> </column> </output>