Mercurial > repos > diego > rtg_investigator
view tools/rtg/coverage.xml @ 1:8593828f91e7 default tip
Full galaxy wrapper
author | diego |
---|---|
date | Sat, 21 Apr 2012 21:36:15 -0400 |
parents | |
children |
line wrap: on
line source
<tool id="rtg_coverage" name="Coverage"> <description>coverage</description> <command interpreter="bash">galaxy-rtg-singleoutput-wrapper.sh $output $output.id $__new_file_path__ coverage.bed coverage -t ${template.extra_files_path} $input1 #for $i in $inputs ${i.input} #end for -Z </command> <inputs> <param name="template" type="data" format="rtg_sdf" label="Reference SDF"/> <param name="input1" label="First SAM file" type="data" format="sam,samix" /> <repeat name="inputs" title="Input SAM Files"> <param name="input" label="Add file" type="data" format="sam,samix" /> </repeat> </inputs> <outputs> <data name="output" format="bed"/> </outputs> <help> This tool calculates coverage using rtg coverage </help> </tool>