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1 {% set version = "1.12.0" %}
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2 {% set name = "csaw" %}
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3 {% set bioc = "3.6" %}
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4
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5 package:
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6 name: 'bioconductor-{{ name|lower }}'
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7 version: '{{ version }}'
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8 source:
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9 fn: '{{ name }}_{{ version }}.tar.gz'
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10 url:
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11 - 'http://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
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12 - 'https://depot.galaxyproject.org/software/{{ name }}/{{ name }}_{{ version }}_src_all.tar.gz'
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13 sha256: 894cf793f221c0cc2564f1f1c43ca899a7ca6f925e0ba7cd7365388e996d844b
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14 build:
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15 number: 0
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16 rpaths:
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17 - lib/R/lib/
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18 - lib/
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19 requirements:
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20 build:
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21 - bioconductor-annotationdbi
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22 - bioconductor-biocgenerics
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23 - bioconductor-biocparallel
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24 - bioconductor-edger
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25 - bioconductor-genomeinfodb
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26 - bioconductor-genomicfeatures
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27 - bioconductor-genomicranges
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28 - bioconductor-iranges
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29 - bioconductor-limma
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30 - bioconductor-rhtslib
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31 - bioconductor-rsamtools
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32 - bioconductor-s4vectors
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33 - 'bioconductor-summarizedexperiment >=1.2.0'
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34 - r-base
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35 - r-rcpp
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36 - gcc # [linux]
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37 - llvm # [osx]
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38 run:
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39 - bioconductor-annotationdbi
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40 - bioconductor-biocgenerics
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41 - bioconductor-biocparallel
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42 - bioconductor-edger
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43 - bioconductor-genomeinfodb
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44 - bioconductor-genomicfeatures
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45 - bioconductor-genomicranges
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46 - bioconductor-iranges
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47 - bioconductor-limma
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48 - bioconductor-rhtslib
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49 - bioconductor-rsamtools
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50 - bioconductor-s4vectors
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51 - 'bioconductor-summarizedexperiment >=1.2.0'
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52 - r-base
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53 - r-rcpp
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54 test:
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55 commands:
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56 - '$R -e "library(''{{ name }}'')"'
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57 about:
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58 home: 'http://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
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59 license: GPL-3
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60 summary: 'Detection of differentially bound regions in ChIP-seq data with sliding windows, with methods for normalization and proper FDR control.'
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