diff 01_mismatch_removal/mismatchRemovalSam.xml @ 0:90de2c9de6eb draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/01_mismatch_removal/mismatchRemovalSam.xml	Tue Aug 15 16:32:09 2017 -0400
@@ -0,0 +1,35 @@
+<tool id="mismatchRemovalSam" name="Remove Mismatches (SNPs) from SAM" version="0.1.0">
+    <requirements>
+    </requirements>
+    <command detect_errors="exit_code"><![CDATA[
+        mismatchRemovalSam "$input1" 3 > "$output1"
+    ]]></command>
+    <inputs>
+        <param type="data" name="input1" format="sam" />
+    </inputs>
+    <outputs>
+        <data name="output1" format="sam" />
+    </outputs>
+    <tests>
+        <test>
+            <param name="input1" value="input.sam"/>
+            <output name="output1" file="output.sam"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+        This program will remove mismatches from sam file.
+Usage: mismatchRemovalSam test.sam 3
+
+    ]]></help>
+    <citations>
+        <citation type="bibtex">
+@misc{github01_mismatch_removal,
+  author = {LastTODO, FirstTODO},
+  year = {TODO},
+  title = {01_mismatch_removal},
+  publisher = {GitHub},
+  journal = {GitHub repository},
+  url = {https://github.com/dktanwar/Galaxy_Tools/tree/master/01_mismatch_removal},
+}</citation>
+    </citations>
+</tool>