Mercurial > repos > dktanwar > removesnps
view 01_RemoveSNPs/test.xml @ 5:67dc94f950fd draft default tip
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author | dktanwar |
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date | Mon, 16 Oct 2017 13:52:09 -0400 |
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<tool id="RemoveSNPs" name="Remove Mismatches (SNPs) from SAM Alignment file" version="0.1.0"> <requirements> </requirements> <command detect_errors="exit_code"><![CDATA[ bash $__tool_directory__/RemoveSNPs "$input1" 3 > "$output1" ]]></command> <inputs> <param type="data" name="input1" format="sam" /> <param type="integer" name="SNPs/ mismatches allowed" value="3" /> </inputs> <outputs> <data name="output1" format="sam" /> </outputs> <tests> <test> <param name="input1" value="input.sam"/> <output name="output1" file="output.sam"/> </test> </tests> <help><![CDATA[ This program will remove mismatches from sam file. Usage: RemoveSNPs test.sam 3 ]]></help> <citations> <citation type="bibtex"> @misc{RemoveSNPs, author = {Tanwar, Deepak}, year = {2017}, title = {RemoveSNPs}, publisher = {GitHub}, journal = {GitHub repository}, url = {https://github.com/dktanwar/NGS_Sperm_H3K4me3_Planemo_tools/tree/master/01_RemoveSNPs}, }</citation> </citations> </tool>