Mercurial > repos > drosofff > msp_blastparser_and_hits
changeset 16:0e51eef139ab draft default tip
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_blastparser_and_hits commit c81a2a37d69ad570068741411bae12dd8289d60c-dirty
| author | drosofff |
|---|---|
| date | Wed, 11 Oct 2017 12:43:04 -0400 |
| parents | 1991c830504a |
| children | |
| files | BlastParser_and_hits.xml |
| diffstat | 1 files changed, 4 insertions(+), 2 deletions(-) [+] |
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--- a/BlastParser_and_hits.xml Wed Nov 09 11:32:32 2016 -0500 +++ b/BlastParser_and_hits.xml Wed Oct 11 12:43:04 2017 -0400 @@ -1,4 +1,4 @@ -<tool id="BlastParser_and_hits" name="Parse blast output and compile hits" version="2.4.3"> +<tool id="BlastParser_and_hits" name="Parse blast output and compile hits" version="2.4.4"> <description>for virus discovery</description> <requirements></requirements> <command><![CDATA[ @@ -24,7 +24,9 @@ ]]></command> <inputs> <param name="sequences" type="data" format="fasta" label="fasta sequences that have been blasted" /> - <param name="blast" type="data" format="tabular" label="The blast output you wish to parse" /> + <param name="blast" type="data" format="tabular" label="The blast output you wish to parse"> + <validator type="expression" message="Blast file must have 13 columns">value.metadata.columns == 13</validator> + </param> <param name="flanking" type="integer" value= "5" label="Number of flanking nucleotides to add to hits for CAP3 assembly"/> <param name="mode" type="select" label="Extensive or compact reporting mode" help="display (extensive) or not (compact) the oases contigs"> <option value="verbose" selected="true">extensive</option>