Mercurial > repos > drosofff > msp_oases

changeset 3:f08d9c814ffb draft

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planemo upload for repository https://bitbucket.org/drosofff/gedtools/ commit b633128427cd321afbe66aa14098a72038068e73
author drosofff
date Tue, 29 Sep 2015 06:29:42 -0400
parents b5df930313cc
children dc684e37f668
files oases_optimiser.xml
diffstat 1 files changed, 11 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/oases_optimiser.xml	Mon Jun 22 10:39:20 2015 -0400
+++ b/oases_optimiser.xml	Tue Sep 29 06:29:42 2015 -0400
@@ -1,4 +1,4 @@
-<tool id="oasesoptimiserv" name="Oases_optimiser" version="1.1.3">
+<tool id="oasesoptimiserv" name="Oases_optimiser" version="1.1.4">
 	<description>Auto optimise de novo RNA-seq Oases/Velvet assembly</description>
         <requirements>
                 <requirement type="package" version="0.2.08_7a32460a60929b510037952ae815bb6e29b68123">oases</requirement>
@@ -8,7 +8,7 @@
 	'#for $i in $inputs
 		${i.input}
            #end for
-    '
+        '
 	'$transcripts'
 	</command>
 
@@ -22,15 +22,22 @@
                         <option value="21">21</option>
                         <option value="23">23</option>
                         <option value="25">25</option>
-
+                        <option value="35">35</option>
+                        <option value="45">45</option>
+                        <option value="55">55</option>
+                        <option value="65">65</option>
           </param>
-          <param label="End Hash Length" name="end_hash_length" type="select" help="k-mer length in base pairs of the words being hashed.">
+          <param label="End Hash Length" name="end_hash_length" type="select" help="k-mer length in base pairs of the words being hashed. Value has to be higher than the Start Hash Length value">
                         <option value="25">25</option>
                         <option value="27">27</option>
                         <option value="29">29</option>
                         <option value="31">31</option>
                         <option value="33">33</option>
                         <option value="35">35</option>
+                        <option value="45">45</option>
+                        <option value="55">55</option>
+                        <option value="63">63</option>
+                        <option value="69">69</option>
           </param>