Mercurial > repos > drosofff > msp_sr_readmap_and_size_histograms
changeset 15:ee1e4c892e9d draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 170951554bb5674a7b2b7a13a03a3422a91af38d
| author | drosofff |
|---|---|
| date | Wed, 20 Dec 2017 18:41:56 -0500 |
| parents | acc5e710dc19 |
| children | 1b8108a02da3 |
| files | readmap.xml |
| diffstat | 1 files changed, 6 insertions(+), 7 deletions(-) [+] |
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--- a/readmap.xml Wed Dec 20 11:58:16 2017 -0500 +++ b/readmap.xml Wed Dec 20 18:41:56 2017 -0500 @@ -1,15 +1,14 @@ -<tool id="Readmap" name="Generate readmap and histograms from alignment files" version="1.2.5"> +<tool id="Readmap" name="Generate readmap and histograms from alignment files" version="1.2.6"> <description>from sRbowtie aligment</description> - <requirements> - <requirement type="package" version="1.2.0=py27_0">bowtie</requirement> + <requirements> + <requirement type="package" version="1.11.2=py27_0">numpy</requirement> <requirement type="package" version="0.11.2.1=py27_0">pysam</requirement> - <requirement type="package" version="1.11.2=py27_0">numpy</requirement> <requirement type="package" version="1.3.2=r3.3.2_0">r-optparse</requirement> <requirement type="package" version="0.6_28=r3.3.2_0">r-latticeextra</requirement> <requirement type="package" version="2.2.1=r3.3.2_0">r-gridextra</requirement> - - </requirements> - <command><![CDATA[ + <requirement type="package" version="1.4.2=r3.3.2_0">r-reshape2</requirement> + </requirements> + <command><![CDATA[ python2 $__tool_directory__/readmap.py #if $refGenomeSource.genomeSource == "history": --reference_fasta