Mercurial > repos > drosofff > package_ged_oases
changeset 0:853ebf512cc7 draft
planemo upload for repository https://bitbucket.org/drosofff/gedtools/
| author | drosofff |
|---|---|
| date | Sun, 21 Jun 2015 14:34:59 -0400 |
| parents | |
| children | 76e8c94ea259 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 33 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Sun Jun 21 14:34:59 2015 -0400 @@ -0,0 +1,33 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="velvet" version="1.2.10_9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3"> + <repository changeset_revision="b3e2c0f12e11" name="package_ged_velvet" owner="drosofff" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="oases" version="0.2.08_7a32460a60929b510037952ae815bb6e29b68123"> + <install version="1.0"> + <actions> + <action type="shell_command">git clone git://github.com/dzerbino/oases.git</action> + <action type="shell_command">git reset --hard 7a32460a60929b510037952ae815bb6e29b68123</action> + <action type="shell_command">sed -i -e "32s/cleanobj//" Makefile</action> + <action type="shell_command">sed -i -e "32s/doc//" Makefile</action> + <action type="set_environment_for_install"> + <repository changeset_revision="b3e2c0f12e11" name="package_ged_velvet" owner="drosofff" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="velvet" version="1.2.10_9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3" /> + </repository> + </action> + <action type="shell_command">VELVETPATH=`echo $PATH | awk -F: '{print $1}'`; make VELVET_DIR=$VELVETPATH MAXKMERLENGTH=70</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> +<!-- <action type="move_file"> + <source>oases</source> + <destination>$INSTALL_DIR</destination> + </action> --> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + </package> +</tool_dependency>