Mercurial > repos > earlhaminst > ensembl_get_genetree

changeset 3:181e12d6ac96 draft

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/Ensembl-REST commit f5c5f3d6ce676937f5c673ec7fc0631a9f490dc2
author earlhaminst
date Fri, 24 Mar 2017 11:57:35 -0400
parents 950d9d11b6fb
children 0602dcf02768
files get_genetree.xml
diffstat 1 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/get_genetree.xml	Wed Dec 21 15:16:35 2016 -0500
+++ b/get_genetree.xml	Fri Mar 24 11:57:35 2017 -0400
@@ -24,11 +24,11 @@
         <requirement type="package" version="2.12.4">requests</requirement>
         <requirement type="package" version="1.10.0">six</requirement>
     </requirements>
-    <command>
+    <command detect_errors="exit_code">
 <![CDATA[
-python $__tool_directory__/get_genetree.py
+python '$__tool_directory__/get_genetree.py'
 --id_type $input_type
--i "$input"
+-i '$input'
 -g $species_selector
 --format ${output_format.output_format_selector}
 #if $output_format.output_format_selector == 'json'
@@ -45,7 +45,7 @@
 #else
     --nh_format $output_format.nh_format
 #end if
-> "$output"
+> '$output'
 ]]>
     </command>