Mercurial > repos > earlhaminst > ensembl_get_sequences
comparison get_sequences.xml @ 3:bce784076824 draft
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/Ensembl-REST commit f5c5f3d6ce676937f5c673ec7fc0631a9f490dc2
| author | earlhaminst |
|---|---|
| date | Fri, 24 Mar 2017 11:57:48 -0400 |
| parents | 4b7261f484bb |
| children | 3b686142e9c2 |
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| 2:4b7261f484bb | 3:bce784076824 |
|---|---|
| 2 <description>using REST API</description> | 2 <description>using REST API</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="2.12.4">requests</requirement> | 4 <requirement type="package" version="2.12.4">requests</requirement> |
| 5 <requirement type="package" version="1.10.0">six</requirement> | 5 <requirement type="package" version="1.10.0">six</requirement> |
| 6 </requirements> | 6 </requirements> |
| 7 <command> | 7 <command detect_errors="exit_code"> |
| 8 <![CDATA[ | 8 <![CDATA[ |
| 9 python $__tool_directory__/get_sequences.py | 9 python '$__tool_directory__/get_sequences.py' |
| 10 -s $species_selector | 10 -s $species_selector |
| 11 --expand_3prime $expand_3prime | 11 --expand_3prime $expand_3prime |
| 12 --expand_5prime $expand_5prime | 12 --expand_5prime $expand_5prime |
| 13 -t $type_selector | 13 -t $type_selector |
| 14 -i "$input" | 14 -i '$input' |
| 15 > "$output" | 15 > '$output' |
| 16 ]]> | 16 ]]> |
| 17 </command> | 17 </command> |
| 18 | 18 |
| 19 <inputs> | 19 <inputs> |
| 20 <param name="input" type="data" format="txt" label="List of Ensembl IDs" /> | 20 <param name="input" type="data" format="txt" label="List of Ensembl IDs" /> |