Mercurial > repos > earlhaminst > ensembl_get_sequences

changeset 3:bce784076824 draft

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/Ensembl-REST commit f5c5f3d6ce676937f5c673ec7fc0631a9f490dc2
author earlhaminst
date Fri, 24 Mar 2017 11:57:48 -0400
parents 4b7261f484bb
children 3b686142e9c2
files get_sequences.xml
diffstat 1 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/get_sequences.xml	Wed Dec 21 15:16:49 2016 -0500
+++ b/get_sequences.xml	Fri Mar 24 11:57:48 2017 -0400
@@ -4,15 +4,15 @@
         <requirement type="package" version="2.12.4">requests</requirement>
         <requirement type="package" version="1.10.0">six</requirement>
     </requirements>
-    <command>
+    <command detect_errors="exit_code">
 <![CDATA[
-python $__tool_directory__/get_sequences.py
+python '$__tool_directory__/get_sequences.py'
 -s $species_selector
 --expand_3prime $expand_3prime
 --expand_5prime $expand_5prime
 -t $type_selector
--i "$input"
-> "$output"
+-i '$input'
+> '$output'
 ]]>
     </command>