Mercurial > repos > earlhaminst > gafa
comparison test-data/align3.fasta @ 1:fc8ca4ade638 draft
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/GAFA/ commit 81a1e79dda127d1afc16c7e456bbec16093a3c3f-dirty
| author | earlhaminst |
|---|---|
| date | Mon, 20 Feb 2017 06:25:33 -0500 |
| parents | |
| children |
comparison
equal
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| 0:af9f72ddf7f9 | 1:fc8ca4ade638 |
|---|---|
| 1 >ENSPTRT00000034846_pantroglodytes_1 | |
| 2 MDPECAQLLPALCAVLVDPRQPVADDTCLEKLLDWFKTVTEGESSVVLLQ | |
| 3 EHPCLVELLSHVLKVQDLSSGVLSFSLRLAGTFAAQENCFQYLQQGELLP | |
| 4 GLFGEAGPLGRAAWAVPTVRSGWIQGLRSLAQHPSALRFLADHGAVDTIF | |
| 5 SLQGDSSLFVASAASQLLVHVLALSMQGGAEGQPCLPGGDWPACAQRIMD | |
| 6 HVEESLCSAATPKVTQALNVLTTTFGRCQSPWTEALWVRLSPRVACLLER | |
| 7 DPIPAAHSFVDLLLCVARSPVFSSSDGSLWETVARALSCLGPTHMGPLAL | |
| 8 GILKLEHCPQALRTQAFQVLLQPLACVLKATVQAPGPPGLLDGTADDATT | |
| 9 VDTLLASKSSCAGLLCRTLAHLEELQPLPQRPSPWPQASLLGATVTVLRL | |
| 10 CDGSAAPASSVGGHLCGTLAGCVRVQRAALDFLGTLSQGTGPQELVTQAL | |
| 11 AVLLECLESPGSSPTVLKKAFQATLRWLLSSPKTPGCSDLGPLIPQFLRE | |
| 12 LFPVLQKRLCHPCWEVRDSALEFLTQLSRHWGGQADFRCALLASEVPELA | |
| 13 LQLLQDPESYVRASAVTAMGQLSSQGLHAPTSPEHAEARQSLFPELLHIL | |
| 14 SVDSEGFPRRAVMQVFTEWLRDGHADAARDTEQFVATVLQVASRDLDWEV | |
| 15 RAQGLELALVFLGQTLGPPRTHCPYAVALPEVAPAQPLTEALRALCHVGL | |
| 16 FDFAFCALFDCDRPVAQKSCDLLLFLRDKIASYSSLREARGGPNTASAEA | |
| 17 TLPRWRAGEQAQPPGDQEPEAVLAMLRSLDLEGLRSTLAESSDHVEKSPQ | |
| 18 SLLQDMLATGGFLQGD---------------------------------- | |
| 19 ---------EADCY--- | |
| 20 >ENST00000340611_homosapiens_1 | |
| 21 MDPECAQLLPALCAVLVDPRQPVADDTCLEKLLDWFKTVTEGESSVVLLQ | |
| 22 EHPCLVELLSHVLKVQDLSSGVLSFSLRLAGTFAAQENCFQYLQQGELLP | |
| 23 GLFGEPGPLGRATWAVPTVRSGWIQGLRSLAQHPSALRFLADHGAVDTIF | |
| 24 SLQGDSSLFVASAASQLLVHVLALSMRGGAEGQPCLPGGDWPACAQKIMD | |
| 25 HVEESLCSAATPKVTQALNVLTTTFGRCQSPWTEALWVRLSPRVACLLER | |
| 26 DPIPAAHSFVDLLLCVARSPVFSSSDGSLWETVARALSCLGPTHMGPLAL | |
| 27 GILKLEHCPQALRTQAFQVLLQPLACVLKATVQAPGPPGLLDGTADDATT | |
| 28 VDTLLASKSSCAGLLCRTLAHLEELQPLPQRPSPWPQASLLGATVTVLRL | |
| 29 CDGSAAPASSVGGHLCGTLAGCVRVQRAALDFLGTLSQGTGPQELVTQAL | |
| 30 AVLLECLESPGSSPTVLKKAFQATLRWLLSSPKTPGCSDLGPLIPQFLRE | |
| 31 LFPVLQKRLCHPCWEVRDSALEFLTQLSRHWGGQADFRCALLASEVPQLA | |
| 32 LQLLQDPESYVRASAVTAMGQLSSQGLHAPTSPEHAEARQSLFLELLHIL | |
| 33 SVDSEGFPRRAVMQVFTEWLRDGHADAAQDTEQFVATVLQAASRDLDWEV | |
| 34 RAQGLELALVFLGQTLGPPRTHCPYAVALPEVAPAQPLTEALRALCHVGL | |
| 35 FDFAFCALFDCDRPVAQKSCDLLLFLRDKIASYSSLREARGSPNTASAEA | |
| 36 TLPRWRAGEQAQPPGDQEPEAVLAMLRSLDLEGLRSTLAESSDHVEKSPQ | |
| 37 SLLQDMLATGGFLQGD---------------------------------- | |
| 38 ---------EADCY--- | |
| 39 >ENSRNOT00000064726_rattusnorvegicus_1 | |
| 40 MDAECSRLLPALCAVLADPRQLVADDTCLEKLLDWFKTVTEAEPSLQLLQ | |
| 41 DHPCLMELLSHVLKPQDVSPRVLSFALRLVGVFAAQEDCFQYLQQGELLL | |
| 42 GLFGETGALSWAAWSIPSVRSGWIQGLCSLAHHPSALHFLADSGAVDTIF | |
| 43 SLQGDPSLFVASAASQLLVHILALSMQGGAPGSPVPEAVAWPVCAQKIMN | |
| 44 HVEESLHSKATPQVTQALNVLTTTFGRCHNPWTGVLWERLSPPVARLFER | |
| 45 DPIPATHSLMDLLLSVARSPVLNFAACGLWEMLAQTLSRLSPTQAGPLAL | |
| 46 GTLKLQHCPQELRTQAFRVLLQPLACILKATTQAPGPPGLLDGTAGSLLT | |
| 47 VDALLSSKSACVGLLCQTLAHLEELQMLPQCPSPWPQVPLLQAAVTILRL | |
| 48 SDGSADPSSSAGGRLCGALGGCVRVQRAALDFLGTLSLGTSPLELVLEVF | |
| 49 AVLLKTLESPESSPMVLKKAFQATLRWLQSPHKTPSGSDLSPDALLFLGE | |
| 50 LFPILQKRLCSPCWEVRDSALEFLTHLIRDWGGQADFREALHSSEVPTLA | |
| 51 RQLLQDPESYVRASAVGAAGQLSSQGLQATPANQQGLLMDLMHILSTDSE | |
| 52 GFPRRAVLRVFTEWLRDGHADVVRDTEWFVATVLQAVSRDLDWEVRVQGL | |
| 53 ELAQVFLIQAMGQPRLHCPYTVGLPGATSSRPHLEFLQTLCRLPLFEFAF | |
| 54 CALLDCDRPVAQKACDLLLFLRDKTVSCSNPQEAGDSPNSASVEAALQRW | |
| 55 REGEQAQPLGDLEPEAMLAILRSLDLEGLQGRLAKSSDHVEKSPQSLLQD | |
| 56 MLATVGVLEENEADCY---------------------------------- | |
| 57 ----------------- | |
| 58 >ENSMUST00000041588_musmusculus_1 | |
| 59 MDPECSRLLPALCAVLADPRQLVADDTCLEKLLDWFKTVTEAESSLQLLQ | |
| 60 DHPCLMELLSHVLKPQDVSPRVLSFALRLVGVFAAQEDCFEYLQQGELLL | |
| 61 GLFGESGAPGWAAWSIPSVRSGWIQGLCYLAHHPSALHFLADSGAVDTLF | |
| 62 SLQGDPSLFVASAASQLLVHILALSMQGGAPGSPVPEAAAWPMCAQKIVN | |
| 63 HVDESLHAKATPQVTQALNVLTTTFGRCHNPWTGVLWERLSPPVARLFER | |
| 64 DPIPAVHALMDLLLSVARSPVLNFAACGLWEMLAQTLSRLSPIQAGPLAL | |
| 65 GTLKLQHCPQELRTQAFGVLLQPLACILKATTQAPGPPGLLDGTVGSLLT | |
| 66 VDILLASKSACVGLLCQTLAHLEELQMLPQCPSPWPQVHLLQAALTILHL | |
| 67 CDGSADPSSSAGGRLCGTLGGCVRVQRAALDFLGTLSQGTSPLELVLEVF | |
| 68 AVLLKTLESPESSPMVLKKAFQATLRWLQNPHKTPSSSDLSSDALLFLGE | |
| 69 LFPILQKRLCSPCWEVRDSALEFLTHLIRHWGGQADFREALRSSEVPTLA | |
| 70 LQLLQDPESYVRASAVGAAGQLSSQGLQAAPASPENSQAQQGLLMDLMHI | |
| 71 LSTDSEGFPRRAVLRVFTDWLRDGHADVVRDTEWFVATVLQAVSRDLDWE | |
| 72 VRVQGLELARVFLTQALGQPSLHCPYTVGLPRASSPRPHPEFLQTLCRLP | |
| 73 LFEFAFCALLDCDRPVAQKACDLLLFLRDKTVPCSSPREAGDSPNSASVE | |
| 74 AALQRWREGEQAQPLGDLDPEAMLAILRALDLEGLQGRLAKSSDHVEKSP | |
| 75 QSLLQDMLATVGVLEENEADCY---------------------------- | |
| 76 ----------------- | |
| 77 >ENSMUST00000153440_musmusculus_1 | |
| 78 MDPECSRLLPALCAVLADPRQLVADDTCLEKLLDWFKTVTEAESSLQLLQ | |
| 79 DHPCLMELLSHVLKPQDVSPRVLSFALRLVGVFAAQEDCFEYLQQGELLL | |
| 80 GLFGESGAPGWAAWSIPSVRSGWIQGLCYLAHHPSALHFLADSGAVDTLF | |
| 81 SLQGDPSLFVASAASQLLVHILALSMQGGAPGSPVPEAAAWPMCAQKIVN | |
| 82 HVDESLHAKATPQVTQALNVLTTTFGRCHNPWTGVLWERLSPPVARLFER | |
| 83 DPIPAVHALMDLLLSVARSPVLNFAACGLWEMLAQTLSRLSPIQAGPLAL | |
| 84 GTLKLQHWLAGWDCG----------------------------------- | |
| 85 -------------------------------------------------- | |
| 86 -------------------------------------------------- | |
| 87 -------------------------------------------------- | |
| 88 -------------------------------------------------- | |
| 89 -------------------------------------------------- | |
| 90 -------------------------------------------------- | |
| 91 -------------------------------------------------- | |
| 92 -------------------------------------------------- | |
| 93 -------------------------------------------------- | |
| 94 -------------------------------------------------- | |
| 95 ----------------- | |
| 96 >ENSMUST00000110806_musmusculus_1 | |
| 97 MDPECSRLLPALCAVLADPRQLVADDTCLEKLLDWFKTVTEAESSLQLLQ | |
| 98 DHPCLMELLSHVLKPQDVSPRVLSFALRLVGVFAAQEDCFEYLQQGELLL | |
| 99 GLFGESGAPGWAAWSIPSVRSGWIQGLCYLAHHPSALHFLADSGAVDTLF | |
| 100 SLQGDPSLFVASAASQLLVHILALSMQGGAPGSPVPEAAAWPMCAQKIVN | |
| 101 HVDESLHAKATPQVTQALNVLTTTFGRCHNPWTGVLWERLSPPVARLFER | |
| 102 DPIPAVHALMDLLLSVARSPVLNFAACGLWEMLAQTLSRLSPIQAGPLAL | |
| 103 GTLKLQHCPQELRTQAFGVLLQPLACILKATTQAPGPPGLLDGTVGSLLT | |
| 104 VDILLASKSACVGLLCQTLAHLEELQMLPQCPSPWPQVHLLQAALTILHL | |
| 105 CDGSADPSSSAGGRLCGTLGGCVRVQRAALDFLGTLSQGTSPLELVLEVF | |
| 106 AVLLKTLESPESSPMVLKKAFQATLRWLQNPHKTPSSSDLSSDALLFLGE | |
| 107 LFPILQKRLCSPCWEVRDSALEFLTHLIRHWGGQADFREALRSSEVPTLA | |
| 108 LQLLQDPESYVRASAVGAAGQLSSQGLQAAPASPENSQAQQVDTGSW--- | |
| 109 -------------------------------------------------- | |
| 110 -------------------------------------------------- | |
| 111 -------------------------------------------------- | |
| 112 -------------------------------------------------- | |
| 113 -------------------------------------------------- | |
| 114 ----------------- | |
| 115 >ENSMUST00000100505_musmusculus_1 | |
| 116 MVHFALSGLIPVAEGCGGGIRTPRLTRSRRERTSYPDLGGTACLIMDPEC | |
| 117 SRLLPALCAVLADPRQLVADDTCLEKLLDWFKTVTEAESSLQLLQDHPCL | |
| 118 MELLSHVLKPQDVSPRVLSFALRLVGVFAAQEDCFEYLQQGELLLGLFGE | |
| 119 SGAPGWAAWSIPSVRSGWIQGLCYLAHHPSALHFLADSGAVDTLFSLQGD | |
| 120 PSLFVASAASQLLVHILALSMQGGAPGSPVPEAAAWPMCAQKIVNHVDES | |
| 121 LHAKATPQVTQALNVLTTTFGRCHNPWTGVLWERLSPPVARLFERDPIPA | |
| 122 VHALMDLLLSVARSPVLNFAACGLWEMLAQTLSRLSPIQAGPLALGTLKL | |
| 123 QHCPQELRTQAFGVLLQPLACILKATTQAPGPPGLLDGTVGSLLTVDILL | |
| 124 ASKSACVGLLCQTLAHLEELQMLPQCPSPWPQVHLLQAALTILHLCDGSA | |
| 125 DPSSSAGGRLCGTLGGCVRVQRAALDFLGTLSQGTSPLELVLEVFAVLLK | |
| 126 TLESPESSPMVLKKAFQATLRWLQNPHKTPSSSDLSSDALLFLGELFPIL | |
| 127 QKRLCSPCWEVRDSALEFLTHLIRHWGGQADFREALRSSEVPTLALQLLQ | |
| 128 DPESYVRASAVGAAGQLSSQGLQAAPASPENSQAQQGLLMDLMHILSTDS | |
| 129 EGFPRRAVLRVFTDWLRDGHADVVRDTEWFVATVLQAVSRDLDWEVRVQG | |
| 130 LELARVFLTQALGQPSLHCPYTVGLPRASSPRPHPEFLQTLCRLPLFEFA | |
| 131 FCALLDCDRPVAQKACDLLLFLRDKTVPCSSPREAGDSPNSASVEAALQR | |
| 132 WREGEQAQPLGDLDPEAMLAILRALDLEGLQGRLAKSSDHVEKSPQSLLQ | |
| 133 DMLATVGVLEENEADCY | |
| 134 >ENSCAFT00000025950_canisfamiliaris_1 | |
| 135 MDPECSQLLPALCAVLADPRQPVADDTCLEKLLDWFKTITKAGSSLLLLQ | |
| 136 ENPCLVELLCHVLKPQDLSSRVLSFSLRLAGVFAAQEDCFQYLQQGELLP | |
| 137 RLFGEPGPLGGAAWTAPSVRSGWIQGLRSLAQHPSALHFLADCGAVDTIF | |
| 138 SLQGDSSLFVASAAGQLLVHILGLSMQGLAEGHPSLQAGDWPVCAQKIVG | |
| 139 HIEESLHSTAVPQITQALNVLTTTFGHCHDPWTQVLWVRLSPLVGSLLEK | |
| 140 DPVPAAHSLVDLLLSVARSPGLSSSSCGLWETLAQTLNHLSPTQAGPLAL | |
| 141 GILKLQDCPQVLRAQAFVILLQPLACVLKATGQDPGPSGVLDSATGDSLT | |
| 142 VDVLLSSKAACVGLLCRTLAHLELLQPLPQRPCPWPQEPLLGAAVTLLQL | |
| 143 CRGSASPASDVGRHLCALLLGCVRVQRAALDFLGTLSQGTGPQELVTEVF | |
| 144 AVLLEYLRSPDSSPTVLKKAFQATFRWLLSSPKTPGCCDLEPHALLVLRE | |
| 145 LLPVLQKRLCSPCWEVRDSGLEFLTQMTRHWGGQAGFRHALLASEVPKLT | |
| 146 EQLLRDPESYVRASAVTVMGQLSSQGLHVTPVSPEHPGGQQKSLLVELLH | |
| 147 ILSTDSEGFPRRAVMQVFTQWLRDHHADVAGDTEQFMARVLQVASQDLDW | |
| 148 EVRAQGLELALVFLEQTLGQFHSHCPYAVTPPVAAPAGSLAQALQPLCRV | |
| 149 RLFEFAFRALFDCDRPVAQKSCDLLLFLRAKTASSSGSLEESRSGPDVAS | |
| 150 VEAALQRWQAGDQGQPLGDLEPEVVLAVLRSVDLEGLRGALAEGSDHMEK | |
| 151 SPQSLLQDMLATVGVL---------------------------------- | |
| 152 ---------GENEADCY | |
| 153 >ENSSSCT00000008295_susscrofa_1 | |
| 154 MDPECSRLLPALCAVLADPRQPVADDTCLEKLLDWFKTITEAGSSLLVLQ | |
| 155 ENPCLVELLFDVLKPQDLSPRVLSFSLRLAGMFAAQEDCFQYLQQGELLP | |
| 156 RLFGEAGPLGGAAWTAPTVRSGWIQGLRSLAQHPRALPFLADCGAVDTIF | |
| 157 SLQGDSSLFVASAAGQLLVHILDLAMRAPPRGHPGPQACDGPACAQKIVC | |
| 158 HLEDSLRAAAAPQLTQALNVLTTTFGHCHGLWTPGLWGRLSPLVGHLLEK | |
| 159 DPVPASHALVDLLLSVARSPVLSSESGPWETLALTLSRLSPMQAGPLALG | |
| 160 ILKLQDCPQALRTQASGVLLQPLACVLKAAVQGPGRPGRLLGKGGRCRMA | |
| 161 GPWGPERILGAGAGCHPRCDCCSCCHPGXSALGLAQEARLRLCDNAAIPR | |
| 162 SDLGGQFCGHLVACVRVQRAALDFLGTLSQRAGPQELVTQVSAVLLEYLS | |
| 163 GPDSSPTVLKKAFQASLGWLLSSPKTPGCCDLDPHAQQFLRELLPVLQKR | |
| 164 LCSPCWEVRDSGLEFLTQMARHWGGQAAFRQVLLASEVPRLTRQLLQDPE | |
| 165 SYVRASAVTATGQLSSWGLHAAPAGPEHPGVQQKSLLSELLHVLATDSEG | |
| 166 FPRRAVMQVFTEWLRGGHADVAEDPEQFVAGVLQAASRDLDWEVRAQGLE | |
| 167 LALVFLEQLLGPPGVRCPYAVALPKAAPPGTLAQALQALCRVQLFEFAFR | |
| 168 ALFDCDRPVAQKSCDLLLFLKAKATSCGTPQEERDSPDVSSVEATLQKWQ | |
| 169 AGEHGHPLGDLEPAAVVAVLRSMDLEGLQDTLAESSDHVERSPQSLLQDM | |
| 170 LATVGVLGENEADCY----------------------------------- | |
| 171 ----------------- |