Mercurial > repos > earlhaminst > gafa
view test-data/align4.fasta @ 7:b9f1bcf5ee59 draft default tip
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/GAFA/ commit fa875eea77a9471acada2b7b8882a0467994c960
| author | earlhaminst |
|---|---|
| date | Wed, 25 Apr 2018 10:59:55 -0400 |
| parents | fc8ca4ade638 |
| children |
line wrap: on
line source
>ENSPTRT00000019089_pantroglodytes_1 IGTGGRRGAAAAPLLVAVAALLLGAAGHLYPGEVCPGMDIRNNLTRLHEL ENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLK DLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNN ELCYLATIDWSRILDSVEDNYIVLNKDDNEECGDICPGTAKGKTNCPATV INGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPT KCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQG CHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDS VTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRS YALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQ GKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELL KFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDA CGSNSWTVVDIDPPLRSNDPKSQNHP--GWLMRGLKPWTQYAIFVKTLVT FSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDP NGNITHYLVFWERQAEDSELFELDYCLKWCVWCVCVVVCLWSVCEYEDSA GECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRKTSSGTGAEDPR PSRKRRSLGDVGNVTVAVPTVAAFPNTSSTSVPTSPEEHRPFEKVVNKES LVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGP VTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCVSRKHFA LERGCRLRGLSPGNYSVRVRATSLAGNGSWTEPTYFYVTDYLDVPSNIAK IIIGPLIFVFLFSVVIGSIYLFLRKRQPDGPLGPLYASSNPEYLSASDVF PCSVYVPDEWEVPREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAV KTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELM AHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFV HRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPE SLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLD QPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPSFPEVSFFHS EENKAPESEELEMEFEDMENVPLDRSSHCQREEAGGRDGGSSLGFKRSYE EHIPYTHMNGGKKNGRILTLPRSNPS---------- >ENST00000341500_homosapiens_1 MATGGRRGAAAAPLLVAVAALLLGAAGHLYPGEVCPGMDIRNNLTRLHEL ENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLK DLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNN ELCYLATIDWSRILDSVEDNYIVLNKDDNEECGDICPGTAKGKTNCPATV INGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPT KCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQG CHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDS VTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRS YALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQ GKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELL KFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDA CGSNSWTVVDIDPPLRSNDPKSQNHP--GWLMRGLKPWTQYAIFVKTLVT FSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDP NGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHN QSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRK RRSLGDVGNVTVAVPTVAAFPNTSSTSVPTSPEEHRPFEKVVNKESLVIS GLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHE IFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCVSRKHFALERG CRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSNIAKIIIG PLIFVFLFSVVIGSIYLFLRKRQPDGPLGPLYASSNPEYLSASDVFPCSV YVPDEWEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVN ESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGD LKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDL AARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKD GVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPDN CPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPSFPEVSFFHSEENK APESEELEMEFEDMENVPLDRSSHCQREEAGGRDGGSSLGFKRSYEEHIP YTHMNGGKKNGRILTLPRSNPS-------------- >ENST00000302850_homosapiens_1 MATGGRRGAAAAPLLVAVAALLLGAAGHLYPGEVCPGMDIRNNLTRLHEL ENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLK DLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNN ELCYLATIDWSRILDSVEDNYIVLNKDDNEECGDICPGTAKGKTNCPATV INGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPT KCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQG CHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDS VTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRS YALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQ GKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELL KFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDA CGSNSWTVVDIDPPLRSNDPKSQNHP--GWLMRGLKPWTQYAIFVKTLVT FSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDP NGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHN QSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRKTSS GTGAEDPRPSRKRRSLGDVGNVTVAVPTVAAFPNTSSTSVPTSPEEHRPF EKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEA KADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHL CVSRKHFALERGCRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTDYL DVPSNIAKIIIGPLIFVFLFSVVIGSIYLFLRKRQPDGPLGPLYASSNPE YLSASDVFPCSVYVPDEWEVSREKITLLRELGQGSFGMVYEGNARDIIKG EAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQP TLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMA YLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLL PVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKF VMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPSF PEVSFFHSEENKAPESEELEMEFEDMENVPLDRSSHCQREEAGGRDGGSS LGFKRSYEEHIPYTHMNGGKKNGRILTLPRSNPS-- >ENST00000600492_homosapiens_1 YKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGL KPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSN SSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGRVQSSA PL------------------------------------------------ -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ------------------------------------ >ENSMUST00000208839_musmusculus_1 XTDYYRKGGKGLLPVRWMSPESLKDGVFTASSDMWSFGVVLWEITSLAEQ PYQGLSNEQVLKFVMDGGYLDPPDNCPERLRYEIKTHWPP---------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ------------------------------------ >ENSMUST00000091291_musmusculus_1 MGFGRGCETTAVPLLVAVAALLVGTAGHLYPGEVCPGMDIRNNLTRLHEL ENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLK DLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNN ELCYLATIDWSRILDSVEDNYIVLNKDDNEECGDVCPGTAKGKTNCPATV INGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHKECLGNCSEPDDPT KCVACRNFYLDGQCVETCPPPYYHFQDWRCVNFSFCQDLHFKCRNSRKPG CHQYVIHNNKCIPECPSGYTMNSSNLMCTPCLGPCPKVCQILEGEKTIDS VTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGFLKIRRS YALVSLSFFRKLHLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQ GKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELL KFSFIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDA CGSNSWTVVDIDPPQRSNDPKSQTPSHPGWLMRGLKPWTQYAIFVKTLVT FSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDP NGNITHYLVYWERQAEDSELFELDYCLKGLKLPSRTWSPPFESDDSQKHN QSEYDDSASECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPR---- --------PSRKRRSLEEVGNVTATTLTLPDFPNVSSTIVPTSQEEHRPF EKVVNKESLVISGLRHFTGYRIELQACNQDSPDERCSVAAYVSARTMPEA KADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHL CVSRKHFALERGCRLRGLSPGNYSVRVRATSLAGNGSWTEPTYFYVTDYL DVPSNIAKIIIGPLIFVFLFSVVIGSIYLFLRKRQPDGPMGPLYASSNPE YLSASDVFPSSVYVPDEWEVPREKITLLRELGQGSFGMVYEGNAKDIIKG EAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQP TLVVMELMAHGDLKSHLRSLRPDAENNPGRPPPTLQEMIQMTAEIADGMA YLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLL PVRWMSPESLKDGVFTASSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKF VMDGGYLDPPDNCPERLTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPSF PEVSFFYSEENKAPESEELEMEFEDMENVPLDRSSHCQREEAGGREGGSS LSIKRTYDEHIPYTHMNGGKKNGRVLTLPRSNPS-- >ENSMUST00000207100_musmusculus_1 RSNDPKSQTPSHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDII YVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVYWERQA EDSELFELDYCLKGLKLPSRTWSPPFESDDSQKHNQSEYDDSASECCSCP KTDSQILKELEESSFRKTFEDYLHNVVFVPRKTSSGNGAEDSRPSRKRRS LEEVGNVTATTLTLPDFPNVSSTI-------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ------------------------------------ >ENSRNOT00000041155_rattusnorvegicus_1 MGSGRGCETTAVPLLMAVAALLVGTAGHLYPGEVCPGMDIRNNLTRLHEL ENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLK DLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNN ELCYLATIDWSRILDSVEDNYIVLNKDDNEECGDVCPGTAKGKTNCPATV INGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHKECLGNCSEPDDPT KCVACRNFYLDGQCVETCPPPYYHFQDWRCVNFSFCQDLHYKCRNSRKPG CHQYVIHNNKCIPECPSGYTMNSSNLMCTPCLGPCPKVCQILEGEKTIDS VTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGFLKIRRS YALVSLSFFRKLHLIRGETLEIGNYSFYALDNQNLRQLWDWNKHNLTITQ GKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELL KFSFIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDA CGSNSWTVVDIDPPQRSNDPKSQTPS--HPGWLMRGLKPWTQYAIFVKTL VTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPS DPNGNITHYLVYWERQAEDSELFELDYCLKGLKLPSRTWSPPFESDDSQK HNQSEYDDSASECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRKT SSGNGAEDTRPSRKRRSLEEVGNVTATTPTLPDFPNISSTIAPTSHEEHR PFEKVVNKESLVISGLRHFTGYRIELQACNQDSPEERCSVAAYVSARTMP EAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEEL HLCVSRKHFALERGCRLRGLSPGNYSVRVRATSLAGNGSWTEPTYFYVTD YLDVPSNIAKIIIGPLIFVFLFSVVIGSIYLFLRKRQPDGPMGPLYASSN PEYLSASDVFPSSVYVPDEWEVPREKITLLRELGQGSFGMVYEGNAKDII KGEVETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKG QPTLVVMELMAHGDLKSHLRSLRPDAENNPGRPPPTLQEMIQMTAEIADG MAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKG LLPVRWMSPESLKDGVFTASSDMWSFGVVLWEITSLAEQPYQGLSNEQVL KFVMDGGYLDPPDNCPERLTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHP SFPEVSFFYSEENKAPESEELEMEFEDMENVPLDRSSHCQREEAGCREGG SSLSIKRTYDEHIPYTHMNGGKKNGRVLTLPRSNPS >ENSRNOT00000067448_rattusnorvegicus_1 MGSGRGCETTAVPLLMAVAVAGGTAGHLYPGEVCPGMDIRNNLTRLHELE NCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKD LFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNE LCYLATIDWSRILDSVEDNYIVLNKDDNEECGDVCPGTAKGKTNCPATVI NGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHKECLGNCSEPDDPTK CVACRNFYLDGQCVETCPPPYYHFQDWRCVNFSFCQDLHYKCRNSRKPGC HQYVIHNNKCIPECPSGYTMNSSNLMCTPCLGPCPKVCQILEGEKTIDSV TSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGFLKIRRSY ALVSLSFFRKLHLIRGETLEIGNYSFYALDNQNLRQLWDWNKHNLTITQG KLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLK FSFIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDAC GSNSWTVVDIDPPQRSNDPKSQTPSH--PGWLMRGLKPWTQYAIFVKTLV TFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSD PNGNITHYLVYWERQAEDSELFELDYCLKGLKLPSRTWSPPFESDDSQKH NQSEYDDSASECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRKTS SGNGAEDTRPSRKRRSLEEVGNVTATTPTLPDFPNISSTIAPTSHEEHRP FEKVVNKESLVISGLRHFTGYRIELQACNQDSPEERCSVAAYVSARTMPE AKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELH LCVSRKHFALERGCRLRGLSPGNYSVRVRATSLAGNGSWTEPTYFYVTDY LDVPSNIAKIIIGPLIFVFLFSVVIGSIYLFLRKRQPDGPMGPLYASSNP EYLSASDVFPSSVYVPDEWEVPREKITLLRELGQGSFGMVYEGNAKDIIK GEVETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQ PTLVVMELMAHGDLKSHLRSLRPDAENNPGRPPPTLQEMIQMTAEIADGM AYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGL LPVRWMSPESLKDGVFTASSDMWSFGVVLWEITSLAEQPYQGLSNEQVLK FVMDGGYLDPPDNCPERLTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPS FPEVSFFYSEENKAPESEELEMEFEDMENVPLDRSSHCQREEAGCREGGS SLSIKRTYDEHIPYTHMNGGKKNGRVLTLPRSNPS- >ENSSSCT00000014817_susscrofa_1 VCPGMDIRNNLTRLHELANCSVIEGHLQILLMFKTRPEDFRDLSFPKLIM ITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGL YNLMNITRGAVRIEKNNELCYLATIDWSRILDSVEDNYIVLNKDDNEECG DICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGL CCHSECLGNCSEPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNF SFCQDLHNKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLMCTPCLG PCPKVCHLLEGEKTIDSVTSAQELRGCTIINGSLIINIRGGNNLAAELEA NLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQ NLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERND IALKTNGDQASCENELLKFSYIRTSYDKILLKWEPYWPPDFRDLLGFMLF YKEAPYQNVTEFDGQDACGSNSWTVVDIDPPTRSNDPKSQNHPGWLMRGL KPWTQYAIFVKTLVTFSDERRTYGAK--SDIIYVQTDATSKHV------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ------------------------------------