Mercurial > repos > earlhaminst > gafa
view test-data/align4.fasta @ 1:fc8ca4ade638 draft
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/GAFA/ commit 81a1e79dda127d1afc16c7e456bbec16093a3c3f-dirty
| author | earlhaminst |
|---|---|
| date | Mon, 20 Feb 2017 06:25:33 -0500 |
| parents | |
| children |
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>ENSPTRT00000019089_pantroglodytes_1 IGTGGRRGAAAAPLLVAVAALLLGAAGHLYPGEVCPGMDIRNNLTRLHEL ENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLK DLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNN ELCYLATIDWSRILDSVEDNYIVLNKDDNEECGDICPGTAKGKTNCPATV INGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPT KCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQG CHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDS VTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRS YALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQ GKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELL KFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDA CGSNSWTVVDIDPPLRSNDPKSQNHP--GWLMRGLKPWTQYAIFVKTLVT FSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDP NGNITHYLVFWERQAEDSELFELDYCLKWCVWCVCVVVCLWSVCEYEDSA GECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRKTSSGTGAEDPR PSRKRRSLGDVGNVTVAVPTVAAFPNTSSTSVPTSPEEHRPFEKVVNKES LVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGP VTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCVSRKHFA LERGCRLRGLSPGNYSVRVRATSLAGNGSWTEPTYFYVTDYLDVPSNIAK IIIGPLIFVFLFSVVIGSIYLFLRKRQPDGPLGPLYASSNPEYLSASDVF PCSVYVPDEWEVPREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAV KTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELM AHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFV HRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPE SLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLD QPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPSFPEVSFFHS EENKAPESEELEMEFEDMENVPLDRSSHCQREEAGGRDGGSSLGFKRSYE EHIPYTHMNGGKKNGRILTLPRSNPS---------- >ENST00000341500_homosapiens_1 MATGGRRGAAAAPLLVAVAALLLGAAGHLYPGEVCPGMDIRNNLTRLHEL ENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLK DLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNN ELCYLATIDWSRILDSVEDNYIVLNKDDNEECGDICPGTAKGKTNCPATV INGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPT KCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQG CHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDS VTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRS YALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQ GKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELL KFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDA CGSNSWTVVDIDPPLRSNDPKSQNHP--GWLMRGLKPWTQYAIFVKTLVT FSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDP NGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHN QSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRK RRSLGDVGNVTVAVPTVAAFPNTSSTSVPTSPEEHRPFEKVVNKESLVIS GLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHE IFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCVSRKHFALERG CRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSNIAKIIIG PLIFVFLFSVVIGSIYLFLRKRQPDGPLGPLYASSNPEYLSASDVFPCSV YVPDEWEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVN ESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGD LKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDL AARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKD GVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPDN CPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPSFPEVSFFHSEENK APESEELEMEFEDMENVPLDRSSHCQREEAGGRDGGSSLGFKRSYEEHIP YTHMNGGKKNGRILTLPRSNPS-------------- >ENST00000302850_homosapiens_1 MATGGRRGAAAAPLLVAVAALLLGAAGHLYPGEVCPGMDIRNNLTRLHEL ENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLK DLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNN ELCYLATIDWSRILDSVEDNYIVLNKDDNEECGDICPGTAKGKTNCPATV INGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPT KCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQG CHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDS VTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRS YALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQ GKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELL KFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDA CGSNSWTVVDIDPPLRSNDPKSQNHP--GWLMRGLKPWTQYAIFVKTLVT FSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDP NGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHN QSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRKTSS GTGAEDPRPSRKRRSLGDVGNVTVAVPTVAAFPNTSSTSVPTSPEEHRPF EKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEA KADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHL CVSRKHFALERGCRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTDYL DVPSNIAKIIIGPLIFVFLFSVVIGSIYLFLRKRQPDGPLGPLYASSNPE YLSASDVFPCSVYVPDEWEVSREKITLLRELGQGSFGMVYEGNARDIIKG EAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQP TLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMA YLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLL PVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKF VMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPSF PEVSFFHSEENKAPESEELEMEFEDMENVPLDRSSHCQREEAGGRDGGSS LGFKRSYEEHIPYTHMNGGKKNGRILTLPRSNPS-- >ENST00000600492_homosapiens_1 YKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGL KPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSN SSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGRVQSSA PL------------------------------------------------ -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ------------------------------------ >ENSMUST00000208839_musmusculus_1 XTDYYRKGGKGLLPVRWMSPESLKDGVFTASSDMWSFGVVLWEITSLAEQ PYQGLSNEQVLKFVMDGGYLDPPDNCPERLRYEIKTHWPP---------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ------------------------------------ >ENSMUST00000091291_musmusculus_1 MGFGRGCETTAVPLLVAVAALLVGTAGHLYPGEVCPGMDIRNNLTRLHEL ENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLK DLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNN ELCYLATIDWSRILDSVEDNYIVLNKDDNEECGDVCPGTAKGKTNCPATV INGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHKECLGNCSEPDDPT KCVACRNFYLDGQCVETCPPPYYHFQDWRCVNFSFCQDLHFKCRNSRKPG CHQYVIHNNKCIPECPSGYTMNSSNLMCTPCLGPCPKVCQILEGEKTIDS VTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGFLKIRRS YALVSLSFFRKLHLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQ GKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELL KFSFIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDA CGSNSWTVVDIDPPQRSNDPKSQTPSHPGWLMRGLKPWTQYAIFVKTLVT FSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDP NGNITHYLVYWERQAEDSELFELDYCLKGLKLPSRTWSPPFESDDSQKHN QSEYDDSASECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPR---- --------PSRKRRSLEEVGNVTATTLTLPDFPNVSSTIVPTSQEEHRPF EKVVNKESLVISGLRHFTGYRIELQACNQDSPDERCSVAAYVSARTMPEA KADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHL CVSRKHFALERGCRLRGLSPGNYSVRVRATSLAGNGSWTEPTYFYVTDYL DVPSNIAKIIIGPLIFVFLFSVVIGSIYLFLRKRQPDGPMGPLYASSNPE YLSASDVFPSSVYVPDEWEVPREKITLLRELGQGSFGMVYEGNAKDIIKG EAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQP TLVVMELMAHGDLKSHLRSLRPDAENNPGRPPPTLQEMIQMTAEIADGMA YLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLL PVRWMSPESLKDGVFTASSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKF VMDGGYLDPPDNCPERLTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPSF PEVSFFYSEENKAPESEELEMEFEDMENVPLDRSSHCQREEAGGREGGSS LSIKRTYDEHIPYTHMNGGKKNGRVLTLPRSNPS-- >ENSMUST00000207100_musmusculus_1 RSNDPKSQTPSHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDII YVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVYWERQA EDSELFELDYCLKGLKLPSRTWSPPFESDDSQKHNQSEYDDSASECCSCP KTDSQILKELEESSFRKTFEDYLHNVVFVPRKTSSGNGAEDSRPSRKRRS LEEVGNVTATTLTLPDFPNVSSTI-------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ------------------------------------ >ENSRNOT00000041155_rattusnorvegicus_1 MGSGRGCETTAVPLLMAVAALLVGTAGHLYPGEVCPGMDIRNNLTRLHEL ENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLK DLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNN ELCYLATIDWSRILDSVEDNYIVLNKDDNEECGDVCPGTAKGKTNCPATV INGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHKECLGNCSEPDDPT KCVACRNFYLDGQCVETCPPPYYHFQDWRCVNFSFCQDLHYKCRNSRKPG CHQYVIHNNKCIPECPSGYTMNSSNLMCTPCLGPCPKVCQILEGEKTIDS VTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGFLKIRRS YALVSLSFFRKLHLIRGETLEIGNYSFYALDNQNLRQLWDWNKHNLTITQ GKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELL KFSFIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDA CGSNSWTVVDIDPPQRSNDPKSQTPS--HPGWLMRGLKPWTQYAIFVKTL VTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPS DPNGNITHYLVYWERQAEDSELFELDYCLKGLKLPSRTWSPPFESDDSQK HNQSEYDDSASECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRKT SSGNGAEDTRPSRKRRSLEEVGNVTATTPTLPDFPNISSTIAPTSHEEHR PFEKVVNKESLVISGLRHFTGYRIELQACNQDSPEERCSVAAYVSARTMP EAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEEL HLCVSRKHFALERGCRLRGLSPGNYSVRVRATSLAGNGSWTEPTYFYVTD YLDVPSNIAKIIIGPLIFVFLFSVVIGSIYLFLRKRQPDGPMGPLYASSN PEYLSASDVFPSSVYVPDEWEVPREKITLLRELGQGSFGMVYEGNAKDII KGEVETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKG QPTLVVMELMAHGDLKSHLRSLRPDAENNPGRPPPTLQEMIQMTAEIADG MAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKG LLPVRWMSPESLKDGVFTASSDMWSFGVVLWEITSLAEQPYQGLSNEQVL KFVMDGGYLDPPDNCPERLTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHP SFPEVSFFYSEENKAPESEELEMEFEDMENVPLDRSSHCQREEAGCREGG SSLSIKRTYDEHIPYTHMNGGKKNGRVLTLPRSNPS >ENSRNOT00000067448_rattusnorvegicus_1 MGSGRGCETTAVPLLMAVAVAGGTAGHLYPGEVCPGMDIRNNLTRLHELE NCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKD LFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNE LCYLATIDWSRILDSVEDNYIVLNKDDNEECGDVCPGTAKGKTNCPATVI NGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHKECLGNCSEPDDPTK CVACRNFYLDGQCVETCPPPYYHFQDWRCVNFSFCQDLHYKCRNSRKPGC HQYVIHNNKCIPECPSGYTMNSSNLMCTPCLGPCPKVCQILEGEKTIDSV TSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGFLKIRRSY ALVSLSFFRKLHLIRGETLEIGNYSFYALDNQNLRQLWDWNKHNLTITQG KLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLK FSFIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDAC GSNSWTVVDIDPPQRSNDPKSQTPSH--PGWLMRGLKPWTQYAIFVKTLV TFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSD PNGNITHYLVYWERQAEDSELFELDYCLKGLKLPSRTWSPPFESDDSQKH NQSEYDDSASECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRKTS SGNGAEDTRPSRKRRSLEEVGNVTATTPTLPDFPNISSTIAPTSHEEHRP FEKVVNKESLVISGLRHFTGYRIELQACNQDSPEERCSVAAYVSARTMPE AKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELH LCVSRKHFALERGCRLRGLSPGNYSVRVRATSLAGNGSWTEPTYFYVTDY LDVPSNIAKIIIGPLIFVFLFSVVIGSIYLFLRKRQPDGPMGPLYASSNP EYLSASDVFPSSVYVPDEWEVPREKITLLRELGQGSFGMVYEGNAKDIIK GEVETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQ PTLVVMELMAHGDLKSHLRSLRPDAENNPGRPPPTLQEMIQMTAEIADGM AYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGL LPVRWMSPESLKDGVFTASSDMWSFGVVLWEITSLAEQPYQGLSNEQVLK FVMDGGYLDPPDNCPERLTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPS FPEVSFFYSEENKAPESEELEMEFEDMENVPLDRSSHCQREEAGCREGGS SLSIKRTYDEHIPYTHMNGGKKNGRVLTLPRSNPS- >ENSSSCT00000014817_susscrofa_1 VCPGMDIRNNLTRLHELANCSVIEGHLQILLMFKTRPEDFRDLSFPKLIM ITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGL YNLMNITRGAVRIEKNNELCYLATIDWSRILDSVEDNYIVLNKDDNEECG DICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGL CCHSECLGNCSEPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNF SFCQDLHNKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLMCTPCLG PCPKVCHLLEGEKTIDSVTSAQELRGCTIINGSLIINIRGGNNLAAELEA NLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQ NLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERND IALKTNGDQASCENELLKFSYIRTSYDKILLKWEPYWPPDFRDLLGFMLF YKEAPYQNVTEFDGQDACGSNSWTVVDIDPPTRSNDPKSQNHPGWLMRGL KPWTQYAIFVKTLVTFSDERRTYGAK--SDIIYVQTDATSKHV------- -------------------------------------------------- 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